Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47527 * 275.43875 * 3 2 1 5 5 H 1.48503 * 109.46671 * 35.43901 * 3 2 1 6 6 H 1.48503 * 109.47024 * 155.43270 * 3 2 1 7 7 C 1.39912 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00022 * 342.19174 * 7 2 1 9 9 C 1.41323 * 120.00556 * 162.19135 * 7 2 1 10 10 C 1.40535 * 120.20442 * 329.62470 * 9 7 2 11 11 C 1.38672 * 119.65413 * 179.97438 * 10 9 7 12 12 C 1.48391 * 119.96286 * 179.97438 * 11 10 9 13 13 C 1.39344 * 120.10762 * 359.70622 * 12 11 10 14 14 C 1.37996 * 119.89004 * 179.76960 * 13 12 11 15 15 C 1.38442 * 120.10633 * 0.52280 * 14 13 12 16 16 Cl 1.73604 * 119.89038 * 179.72644 * 15 14 13 17 17 C 1.38440 * 120.21840 * 359.70598 * 15 14 13 18 18 C 1.37993 * 120.10671 * 0.04134 * 17 15 14 19 19 C 1.39820 * 120.06969 * 359.97438 * 11 10 9 20 20 C 1.38224 * 120.42418 * 0.02562 * 19 11 10 21 21 C 1.38076 * 120.34688 * 0.25232 * 20 19 11 22 22 F 1.35099 * 120.03906 * 179.72749 * 21 20 19 23 23 H 0.96998 * 120.00499 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.17068 * 359.97438 * 10 9 7 25 25 H 1.08003 * 120.05772 * 359.97438 * 13 12 11 26 26 H 1.08004 * 119.94764 * 180.25555 * 14 13 12 27 27 H 1.07996 * 119.94547 * 180.02562 * 17 15 14 28 28 H 1.07998 * 120.05615 * 179.97438 * 18 17 15 29 29 H 1.07998 * 119.78508 * 180.02562 * 19 11 10 30 30 H 1.08000 * 119.82939 * 179.97438 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3751 2.1129 -1.3938 5 1 1.5020 2.6167 0.8118 6 1 3.5927 1.4098 0.5821 7 6 2.0082 -1.2116 -0.0005 8 1 1.5070 -2.1248 0.2851 9 6 3.3706 -1.2408 -0.3748 10 6 3.8678 -0.3137 -1.3067 11 6 5.2068 -0.3523 -1.6654 12 6 5.7390 0.6229 -2.6491 13 6 4.8940 1.5739 -3.2178 14 6 5.3947 2.4818 -4.1285 15 6 6.7317 2.4419 -4.4855 16 17 7.3540 3.5822 -5.6371 17 6 7.5741 1.4960 -3.9268 18 6 7.0840 0.5872 -3.0113 19 6 6.0559 -1.3092 -1.1012 20 6 5.5701 -2.2225 -0.1844 21 6 4.2387 -2.2034 0.1809 22 9 3.7693 -3.1025 1.0734 23 1 -0.4851 0.8400 0.0004 24 1 3.2105 0.4250 -1.7411 25 1 3.8497 1.6025 -2.9438 26 1 4.7415 3.2219 -4.5668 27 1 8.6164 1.4691 -4.2082 28 1 7.7418 -0.1507 -2.5763 29 1 7.0980 -1.3349 -1.3835 30 1 6.2344 -2.9578 0.2451 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236092383.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = -19.924412 kcal Electronic energy + Delta-G solvation = -17898.457687 eV Core-core repulsion = 14790.983940 eV Total energy + Delta-G solvation = -3107.473747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.51069 -39.41917 -37.52777 -36.32328 -33.91794 -31.80525 -31.29655 -30.48216 -27.86837 -25.48525 -23.14115 -22.73353 -21.25119 -20.02876 -17.77575 -17.28932 -16.35356 -15.73833 -15.41713 -14.87507 -14.46463 -14.29934 -14.01246 -13.68738 -13.48255 -13.26750 -12.90512 -12.32094 -12.14246 -11.95045 -11.87447 -11.40029 -11.36848 -10.99945 -10.96545 -10.75045 -10.50029 -10.07775 -9.82548 -9.35652 -8.95837 -8.85882 -7.97085 -7.28147 -7.13155 -4.67785 0.96019 1.41684 2.16408 2.34403 2.39824 2.92318 3.06890 3.17175 3.79000 3.80729 4.35849 4.86835 4.94252 5.04359 5.12463 5.40367 5.47463 5.57226 5.70939 5.74288 6.01286 6.12784 6.24605 6.30728 6.36735 6.42757 6.74018 6.87951 6.93447 7.12721 7.20498 7.36990 7.51009 7.78978 8.14983 8.35814 8.54200 9.88131 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.005664 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.793951 B = 4942.361362 C = 6100.361615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.085 3.915 3 Si 0.903 3.097 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.436 4.436 8 H 0.097 0.903 9 C 0.064 3.936 10 C -0.199 4.199 11 C -0.032 4.032 12 C -0.012 4.012 13 C -0.110 4.110 14 C -0.107 4.107 15 C -0.049 4.049 16 Cl -0.085 7.085 17 C -0.109 4.109 18 C -0.106 4.106 19 C -0.203 4.203 20 C -0.113 4.113 21 C -0.002 4.002 22 F -0.154 7.154 23 H 0.289 0.711 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.572 5.333 -6.597 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.463 4.463 8 H 0.115 0.885 9 C 0.061 3.939 10 C -0.218 4.218 11 C -0.033 4.033 12 C -0.012 4.012 13 C -0.128 4.128 14 C -0.125 4.125 15 C -0.075 4.075 16 Cl -0.056 7.056 17 C -0.128 4.128 18 C -0.124 4.124 19 C -0.222 4.222 20 C -0.132 4.132 21 C -0.022 4.022 22 F -0.133 7.133 23 H 0.100 0.900 24 H 0.130 0.870 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.127 0.873 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.301 5.489 -6.642 13.429 hybrid contribution 0.100 0.684 0.034 0.692 sum 10.400 6.173 -6.607 13.782 Atomic orbital electron populations 1.69678 1.08066 1.30640 1.33442 1.26149 0.94792 1.01634 0.90969 0.86445 0.81687 0.79781 0.79272 1.19104 1.21144 1.16368 1.19431 0.92497 0.96608 1.37812 0.88468 1.17620 0.93388 0.91320 0.91608 1.20951 0.94378 1.04025 1.02423 1.18339 0.93664 0.95056 0.96214 1.19169 0.92981 0.94285 0.94763 1.21418 1.00717 0.94451 0.96208 1.20950 0.93442 0.99773 0.98370 1.20887 0.94368 0.95239 0.97014 1.98341 1.87585 1.60392 1.59306 1.20920 0.99549 0.94790 0.97494 1.21238 0.95139 0.98779 0.97274 1.20236 0.98332 0.99777 1.03886 1.20536 0.93639 0.99796 0.99251 1.17874 0.92077 0.95836 0.96425 1.91322 1.89452 1.66176 1.66388 0.90041 0.86963 0.84693 0.85161 0.85209 0.84646 0.87338 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.38 13.93 55.55 0.77 -19.61 16 2 C 0.09 2.14 5.41 -17.34 -0.09 2.05 16 3 Si 0.90 19.59 24.52 -169.99 -4.17 15.42 16 4 H -0.26 -5.32 6.05 56.52 0.34 -4.98 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.24 -5.40 6.85 56.52 0.39 -5.01 16 7 C -0.44 -11.54 9.25 -37.78 -0.35 -11.89 16 8 H 0.10 2.75 7.98 -52.48 -0.42 2.34 16 9 C 0.06 1.59 5.10 -106.80 -0.54 1.04 16 10 C -0.20 -4.47 6.53 -38.56 -0.25 -4.72 16 11 C -0.03 -0.65 5.87 -104.96 -0.62 -1.27 16 12 C -0.01 -0.20 5.88 -104.89 -0.62 -0.82 16 13 C -0.11 -1.82 9.42 -39.26 -0.37 -2.19 16 14 C -0.11 -1.53 9.81 -39.59 -0.39 -1.91 16 15 C -0.05 -0.66 6.32 -39.43 -0.25 -0.91 16 16 Cl -0.08 -1.01 28.95 -51.86 -1.50 -2.51 16 17 C -0.11 -1.41 9.81 -39.60 -0.39 -1.80 16 18 C -0.11 -1.53 9.42 -39.26 -0.37 -1.90 16 19 C -0.20 -3.83 9.43 -39.00 -0.37 -4.20 16 20 C -0.11 -2.27 9.99 -39.65 -0.40 -2.67 16 21 C 0.00 -0.05 7.31 -38.58 -0.28 -0.33 16 22 F -0.15 -3.67 16.76 2.25 0.04 -3.64 16 23 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 24 H 0.11 2.47 2.96 -52.49 -0.16 2.32 16 25 H 0.14 2.32 5.52 -52.48 -0.29 2.03 16 26 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.14 1.70 6.19 -52.49 -0.32 1.38 16 29 H 0.11 1.69 6.18 -52.49 -0.32 1.36 16 30 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 275.01 15.07 4.14 4.14 Total: -1.00 -25.97 275.01 -7.99 -33.96 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -1.99 Total: 3.76 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -5.28 Total: -31.52 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.77 Total: -19.61 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.04 Total: -3.64 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.17 Total: 15.42 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -25.97 -7.99 -33.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236092383.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.034 kcal (2) G-P(sol) polarization free energy of solvation -25.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds