Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47527 * 275.43875 * 3 2 1 5 5 H 1.48503 * 109.46671 * 35.43901 * 3 2 1 6 6 H 1.48503 * 109.47024 * 155.43270 * 3 2 1 7 7 C 1.39912 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00022 * 342.19174 * 7 2 1 9 9 C 1.41323 * 120.00556 * 162.19135 * 7 2 1 10 10 C 1.40535 * 120.20442 * 329.62470 * 9 7 2 11 11 C 1.38672 * 119.65413 * 179.97438 * 10 9 7 12 12 C 1.48391 * 119.96286 * 179.97438 * 11 10 9 13 13 C 1.39344 * 120.10762 * 359.70622 * 12 11 10 14 14 C 1.37996 * 119.89004 * 179.76960 * 13 12 11 15 15 C 1.38442 * 120.10633 * 0.52280 * 14 13 12 16 16 Cl 1.73604 * 119.89038 * 179.72644 * 15 14 13 17 17 C 1.38440 * 120.21840 * 359.70598 * 15 14 13 18 18 C 1.37993 * 120.10671 * 0.04134 * 17 15 14 19 19 C 1.39820 * 120.06969 * 359.97438 * 11 10 9 20 20 C 1.38224 * 120.42418 * 0.02562 * 19 11 10 21 21 C 1.38076 * 120.34688 * 0.25232 * 20 19 11 22 22 F 1.35099 * 120.03906 * 179.72749 * 21 20 19 23 23 H 0.96998 * 120.00499 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.17068 * 359.97438 * 10 9 7 25 25 H 1.08003 * 120.05772 * 359.97438 * 13 12 11 26 26 H 1.08004 * 119.94764 * 180.25555 * 14 13 12 27 27 H 1.07996 * 119.94547 * 180.02562 * 17 15 14 28 28 H 1.07998 * 120.05615 * 179.97438 * 18 17 15 29 29 H 1.07998 * 119.78508 * 180.02562 * 19 11 10 30 30 H 1.08000 * 119.82939 * 179.97438 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3751 2.1129 -1.3938 5 1 1.5020 2.6167 0.8118 6 1 3.5927 1.4098 0.5821 7 6 2.0082 -1.2116 -0.0005 8 1 1.5070 -2.1248 0.2851 9 6 3.3706 -1.2408 -0.3748 10 6 3.8678 -0.3137 -1.3067 11 6 5.2068 -0.3523 -1.6654 12 6 5.7390 0.6229 -2.6491 13 6 4.8940 1.5739 -3.2178 14 6 5.3947 2.4818 -4.1285 15 6 6.7317 2.4419 -4.4855 16 17 7.3540 3.5822 -5.6371 17 6 7.5741 1.4960 -3.9268 18 6 7.0840 0.5872 -3.0113 19 6 6.0559 -1.3092 -1.1012 20 6 5.5701 -2.2225 -0.1844 21 6 4.2387 -2.2034 0.1809 22 9 3.7693 -3.1025 1.0734 23 1 -0.4851 0.8400 0.0004 24 1 3.2105 0.4250 -1.7411 25 1 3.8497 1.6025 -2.9438 26 1 4.7415 3.2219 -4.5668 27 1 8.6164 1.4691 -4.2082 28 1 7.7418 -0.1507 -2.5763 29 1 7.0980 -1.3349 -1.3835 30 1 6.2344 -2.9578 0.2451 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236092383.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = -32.137396 kcal Electronic energy + Delta-G solvation = -17898.987282 eV Core-core repulsion = 14790.983940 eV Total energy + Delta-G solvation = -3108.003342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.34196 -40.69468 -39.02539 -37.38343 -35.71132 -33.24260 -32.70785 -31.90058 -29.30898 -27.25540 -24.57510 -24.03371 -22.71821 -21.55621 -19.47045 -18.77579 -17.85201 -17.31399 -16.89907 -16.40773 -16.12633 -15.85214 -15.35538 -15.15015 -14.68814 -14.60231 -14.52098 -13.87068 -13.83635 -13.41890 -13.33133 -12.85089 -12.73764 -12.53778 -12.34096 -12.04832 -11.92763 -11.81135 -11.46602 -11.08519 -10.20549 -10.04759 -9.71337 -8.99680 -8.78795 -6.61924 -0.34194 0.32124 0.64125 0.85673 1.13195 1.18003 1.33776 1.41765 2.02958 2.37862 2.78014 3.33003 3.69097 3.75904 3.82436 3.95001 4.15844 4.32808 4.35207 4.44153 4.60141 4.76062 4.85753 4.96026 5.06442 5.18979 5.21960 5.37958 5.48015 5.54075 5.64422 5.80321 5.87713 6.00469 6.23176 6.53929 6.65024 8.09306 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.005664 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.793951 B = 4942.361362 C = 6100.361615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.052 3.948 3 Si 0.953 3.047 4 H -0.241 1.241 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.483 4.483 8 H 0.053 0.947 9 C 0.046 3.954 10 C -0.209 4.209 11 C -0.030 4.030 12 C -0.042 4.042 13 C -0.124 4.124 14 C -0.110 4.110 15 C -0.045 4.045 16 Cl -0.067 7.067 17 C -0.102 4.102 18 C -0.096 4.096 19 C -0.179 4.179 20 C -0.106 4.106 21 C -0.036 4.036 22 F -0.167 7.167 23 H 0.297 0.703 24 H 0.111 0.889 25 H 0.120 0.880 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.920 6.955 -8.492 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.164 4.164 3 Si 0.775 3.225 4 H -0.166 1.166 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.512 4.512 8 H 0.071 0.929 9 C 0.043 3.957 10 C -0.228 4.228 11 C -0.031 4.031 12 C -0.043 4.043 13 C -0.142 4.142 14 C -0.128 4.128 15 C -0.072 4.072 16 Cl -0.038 7.038 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.198 4.198 20 C -0.125 4.125 21 C -0.056 4.056 22 F -0.146 7.146 23 H 0.108 0.892 24 H 0.129 0.871 25 H 0.137 0.863 26 H 0.164 0.836 27 H 0.180 0.820 28 H 0.178 0.822 29 H 0.175 0.825 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.654 7.106 -8.550 18.394 hybrid contribution -0.938 0.165 0.445 1.051 sum 13.715 7.271 -8.105 17.512 Atomic orbital electron populations 1.69708 1.09162 1.31791 1.35994 1.26788 0.95378 1.03962 0.90263 0.85696 0.79758 0.76515 0.80573 1.16573 1.19912 1.17623 1.19318 0.94140 0.95886 1.41878 0.92904 1.17796 0.92885 0.92736 0.92316 1.21053 0.95956 1.03659 1.02167 1.18712 0.92695 0.95574 0.96092 1.19105 0.94636 0.94775 0.95748 1.21394 1.00202 0.95357 0.97217 1.21093 0.94328 0.99579 0.97831 1.21091 0.94181 0.95286 0.96625 1.98358 1.87228 1.59702 1.58502 1.21266 1.00951 0.93556 0.96266 1.21467 0.93843 0.99173 0.96846 1.20859 1.00310 0.97358 1.01255 1.20958 0.92326 1.00438 0.98793 1.18331 0.93700 0.96165 0.97396 1.91282 1.89854 1.66530 1.66910 0.89206 0.87100 0.86251 0.83590 0.82004 0.82163 0.82529 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.00 13.93 21.82 0.30 -45.69 16 2 C 0.05 2.77 5.41 85.24 0.46 3.23 16 3 Si 0.95 41.43 24.52 68.60 1.68 43.11 16 4 H -0.24 -9.40 6.05 99.48 0.60 -8.80 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.25 -11.31 6.85 99.48 0.68 -10.62 16 7 C -0.48 -27.70 9.25 23.43 0.22 -27.48 16 8 H 0.05 3.34 7.98 -2.91 -0.02 3.32 16 9 C 0.05 2.35 5.10 -21.27 -0.11 2.24 16 10 C -0.21 -9.45 6.53 22.93 0.15 -9.30 16 11 C -0.03 -1.15 5.87 -20.09 -0.12 -1.27 16 12 C -0.04 -1.33 5.88 -20.04 -0.12 -1.45 16 13 C -0.12 -3.82 9.42 22.48 0.21 -3.61 16 14 C -0.11 -2.79 9.81 22.26 0.22 -2.57 16 15 C -0.05 -1.03 6.32 22.37 0.14 -0.89 16 16 Cl -0.07 -1.31 28.95 -2.72 -0.08 -1.39 16 17 C -0.10 -2.09 9.81 22.26 0.22 -1.88 16 18 C -0.10 -2.25 9.42 22.48 0.21 -2.04 16 19 C -0.18 -6.01 9.43 22.65 0.21 -5.80 16 20 C -0.11 -4.00 9.99 22.23 0.22 -3.78 16 21 C -0.04 -1.71 7.31 22.92 0.17 -1.54 16 22 F -0.17 -8.29 16.76 44.97 0.75 -7.53 16 23 H 0.30 14.45 8.30 -92.71 -0.77 13.68 16 24 H 0.11 4.96 2.96 -2.91 -0.01 4.95 16 25 H 0.12 4.00 5.52 -2.91 -0.02 3.99 16 26 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 27 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.16 2.91 6.19 -2.91 -0.02 2.89 16 29 H 0.16 3.77 6.18 -2.91 -0.02 3.76 16 30 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -60.94 275.01 5.82 -55.12 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.07 Total: 12.53 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 2.09 Total: -56.14 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.30 Total: -45.69 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.75 Total: -7.53 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.68 Total: 43.11 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -60.94 5.82 -55.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236092383.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.981 kcal (2) G-P(sol) polarization free energy of solvation -60.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds