Wall clock time and date at job start Mon Mar 30 2020 01:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 N 1.46900 * 109.47256 * 177.27847 * 3 2 1 5 5 C 1.46898 * 111.00109 * 165.99846 * 4 3 2 6 6 C 1.50698 * 109.46911 * 290.88734 * 5 4 3 7 7 H 1.07998 * 120.00258 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99704 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00205 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99962 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47184 * 359.97438 * 10 8 6 12 12 H 1.48511 * 109.47237 * 119.99790 * 10 8 6 13 13 H 1.48500 * 109.47180 * 239.99460 * 10 8 6 14 14 C 1.46902 * 110.99998 * 289.95497 * 4 3 2 15 15 C 1.50703 * 109.47203 * 168.52464 * 14 4 3 16 16 C 1.38259 * 119.99637 * 278.50896 * 15 14 4 17 17 C 1.50696 * 120.00299 * 359.97438 * 16 15 14 18 18 C 1.38213 * 119.99788 * 179.80959 * 16 15 14 19 19 C 1.38252 * 119.99986 * 0.39285 * 18 16 15 20 20 C 1.38215 * 119.99976 * 359.85849 * 19 18 16 21 21 C 1.38209 * 119.99990 * 98.77661 * 15 14 4 22 22 C 1.50694 * 120.00165 * 359.97438 * 21 15 14 23 23 C 1.53002 * 109.47383 * 85.69744 * 22 21 15 24 24 H 1.08997 * 109.47384 * 64.78872 * 1 2 3 25 25 H 1.09003 * 109.46869 * 184.79159 * 1 2 3 26 26 H 1.08997 * 109.47434 * 304.78634 * 1 2 3 27 27 H 1.09000 * 109.47457 * 240.00144 * 2 1 3 28 28 H 1.09001 * 109.47273 * 120.00091 * 2 1 3 29 29 H 1.09006 * 109.47161 * 57.28225 * 3 2 1 30 30 H 1.08992 * 109.47212 * 297.27993 * 3 2 1 31 31 H 1.08999 * 109.47034 * 50.88678 * 5 4 3 32 32 H 1.09004 * 109.47020 * 170.88625 * 5 4 3 33 33 H 0.97001 * 119.99992 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47226 * 288.52191 * 14 4 3 35 35 H 1.08994 * 109.47270 * 48.52480 * 14 4 3 36 36 H 1.08999 * 109.47382 * 90.54783 * 17 16 15 37 37 H 1.09001 * 109.47725 * 210.55388 * 17 16 15 38 38 H 1.09005 * 109.47187 * 330.54692 * 17 16 15 39 39 H 1.07999 * 120.00159 * 180.22643 * 18 16 15 40 40 H 1.08000 * 120.00118 * 179.83415 * 19 18 16 41 41 H 1.08009 * 120.00119 * 179.97438 * 20 19 18 42 42 H 1.09005 * 109.46838 * 205.69694 * 22 21 15 43 43 H 1.08997 * 109.47176 * 325.69149 * 22 21 15 44 44 H 1.08997 * 109.46801 * 299.99662 * 23 22 21 45 45 H 1.08996 * 109.47046 * 59.99913 * 23 22 21 46 46 H 1.09000 * 109.46868 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5075 1.4431 0.0658 5 6 4.0487 2.7685 -0.2632 6 6 3.8209 3.0555 -1.7249 7 1 3.3241 2.3260 -2.3474 8 6 4.2475 4.2489 -2.2678 9 7 4.8529 5.1370 -1.5099 10 14 3.9658 4.6043 -4.0799 11 1 3.2695 3.4528 -4.7078 12 1 3.1315 5.8248 -4.2212 13 1 5.2730 4.8179 -4.7515 14 6 3.9755 0.9957 1.3844 15 6 5.4595 0.7389 1.3302 16 6 5.9361 -0.4570 0.8259 17 6 4.9717 -1.5038 0.3310 18 6 7.2972 -0.6909 0.7725 19 6 8.1819 0.2675 1.2308 20 6 7.7052 1.4609 1.7397 21 6 6.3438 1.6966 1.7896 22 6 5.8241 2.9978 2.3443 23 6 5.4936 2.8240 3.8280 24 1 -0.3634 0.4377 -0.9297 25 1 -0.3633 -1.0241 0.0858 26 1 -0.3634 0.5863 0.8440 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6373 1.9702 0.8647 30 1 1.7170 1.9420 -0.9133 31 1 3.5459 3.5258 0.3384 32 1 5.1178 2.7872 -0.0515 33 1 5.1527 5.9767 -1.8918 34 1 3.7673 1.7678 2.1251 35 1 3.4578 0.0775 1.6614 36 1 4.7830 -1.3508 -0.7316 37 1 5.3998 -2.4943 0.4851 38 1 4.0343 -1.4237 0.8816 39 1 7.6697 -1.6236 0.3752 40 1 9.2454 0.0836 1.1916 41 1 8.3963 2.2095 2.0982 42 1 6.5839 3.7709 2.2295 43 1 4.9241 3.2897 1.8033 44 1 4.7338 2.0509 3.9428 45 1 6.3937 2.5321 4.3690 46 1 5.1181 3.7653 4.2293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237326056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:36 Heat of formation + Delta-G solvation = -10.831598 kcal Electronic energy + Delta-G solvation = -22508.290793 eV Core-core repulsion = 19589.180426 eV Total energy + Delta-G solvation = -2919.110367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97138 -38.35986 -35.52251 -34.89695 -34.17900 -32.90620 -30.76078 -29.20346 -28.01213 -26.89190 -25.87204 -24.46339 -23.15967 -21.94587 -21.18403 -20.81480 -18.61013 -17.25984 -17.00824 -16.50013 -16.28758 -16.03775 -15.42789 -15.17465 -14.84514 -14.56619 -14.34974 -14.19949 -13.96180 -13.71811 -13.66353 -13.37517 -13.15131 -12.98150 -12.76882 -12.73233 -12.69341 -12.50359 -12.42671 -12.29832 -12.12653 -11.86657 -11.63709 -11.53584 -11.35477 -11.23119 -11.10790 -10.56425 -9.40742 -9.31682 -8.87991 -8.16402 -6.24699 0.57504 0.60678 1.37400 1.38609 1.51329 2.40237 2.87697 3.15594 3.49723 3.88524 3.93459 4.12442 4.15391 4.16775 4.28586 4.33837 4.40949 4.48635 4.49589 4.61098 4.63904 4.68067 4.77197 4.81667 4.91242 4.97200 4.98988 5.01189 5.02935 5.08654 5.18441 5.22566 5.23870 5.28025 5.35801 5.40593 5.48314 5.49914 5.53545 5.68080 5.69971 5.78955 5.95018 6.13937 6.28687 6.46307 6.71337 6.91854 7.43556 8.93535 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.007455 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.781578 B = 3755.032091 C = 4767.191163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.062 3.938 4 N -0.530 5.530 5 C 0.212 3.788 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.929 5.929 10 Si 0.960 3.040 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.091 3.909 15 C -0.086 4.086 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.139 4.139 19 C -0.121 4.121 20 C -0.144 4.144 21 C -0.079 4.079 22 C -0.096 4.096 23 C -0.132 4.132 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.014 0.986 30 H 0.056 0.944 31 H -0.047 1.047 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.026 0.974 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 -12.096 8.080 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.066 4.066 4 N -0.254 5.254 5 C 0.086 3.914 6 C -0.557 4.557 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.207 1.207 14 C -0.036 4.036 15 C -0.087 4.087 16 C -0.077 4.077 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.162 4.162 21 C -0.079 4.079 22 C -0.133 4.133 23 C -0.189 4.189 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.074 0.926 31 H -0.030 1.030 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.333 -12.258 7.727 14.494 hybrid contribution -0.183 1.682 -0.429 1.746 sum 0.149 -10.576 7.298 12.850 Atomic orbital electron populations 1.21705 0.94529 1.02392 1.01617 1.21485 0.96126 0.94852 1.02162 1.22071 0.87392 0.97676 0.99488 1.62073 1.08325 1.28501 1.26498 1.19426 0.94377 0.83304 0.94249 1.21517 1.37131 1.01437 0.95602 0.92511 1.25801 0.95162 0.96083 1.02373 1.70090 1.40987 1.08607 1.37311 0.85477 0.77846 0.78150 0.80021 1.18921 1.20441 1.20691 1.21110 0.92005 0.99955 0.90523 1.19604 0.95061 0.94239 0.99784 1.20011 0.95218 0.95242 0.97194 1.20733 0.97784 0.96186 1.01034 1.21252 0.92353 1.00595 1.01444 1.21333 1.00583 0.93452 0.98500 1.21152 0.94389 0.98484 1.02187 1.19895 0.94039 0.95363 0.98644 1.20700 1.01059 0.94138 0.97434 1.21663 1.01854 1.01850 0.93539 0.93234 0.90841 0.92842 0.91994 0.91457 0.96798 0.92581 1.02956 0.95984 0.92999 0.95628 0.88797 0.91996 0.90107 0.91303 0.83986 0.83877 0.85634 0.92230 0.92608 0.92748 0.91501 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.91 71.98 0.71 -2.71 16 2 C -0.11 -3.15 6.01 30.59 0.18 -2.96 16 3 C 0.06 2.39 4.81 86.30 0.42 2.80 16 4 N -0.53 -22.91 4.42 -905.37 -4.00 -26.91 16 5 C 0.21 11.41 3.26 85.56 0.28 11.69 16 6 C -0.52 -30.02 8.35 25.60 0.21 -29.81 16 7 H 0.06 3.27 7.44 -2.91 -0.02 3.25 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 10 Si 0.96 45.50 29.54 68.60 2.03 47.52 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 C 0.09 3.36 4.12 85.56 0.35 3.71 16 15 C -0.09 -3.19 4.71 -19.87 -0.09 -3.29 16 16 C -0.08 -2.49 5.88 -19.87 -0.12 -2.60 16 17 C -0.10 -2.74 9.61 71.23 0.68 -2.05 16 18 C -0.14 -4.04 9.70 22.27 0.22 -3.82 16 19 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 20 C -0.14 -4.77 9.68 22.27 0.22 -4.56 16 21 C -0.08 -2.94 4.24 -19.87 -0.08 -3.02 16 22 C -0.10 -3.59 4.85 29.85 0.14 -3.45 16 23 C -0.13 -3.83 9.70 71.98 0.70 -3.13 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.76 6.16 -2.39 -0.01 1.75 16 29 H 0.01 0.53 8.08 -2.38 -0.02 0.51 16 30 H 0.06 2.46 6.84 -2.39 -0.02 2.44 16 31 H -0.05 -2.79 7.54 -2.39 -0.02 -2.81 16 32 H 0.02 1.28 5.21 -2.38 -0.01 1.27 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.03 0.98 5.20 -2.39 -0.01 0.97 16 35 H 0.09 2.96 4.42 -2.39 -0.01 2.95 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 38 H 0.07 1.78 5.83 -2.38 -0.01 1.76 16 39 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.06 2.25 8.06 -2.38 -0.02 2.23 16 43 H 0.06 2.49 4.12 -2.39 -0.01 2.48 16 44 H 0.05 1.54 7.21 -2.39 -0.02 1.52 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.10 352.58 3.75 -62.35 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.94 Total: 19.22 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 4.51 Total: -45.81 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.72 Total: -83.28 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.10 3.75 -62.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237326056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.516 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds