Wall clock time and date at job start Mon Mar 30 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00100 * 2 1 4 4 H 1.07994 * 119.99948 * 202.47413 * 3 2 1 5 5 C 1.38817 * 120.00068 * 22.46207 * 3 2 1 6 6 N 1.31622 * 119.99745 * 11.20618 * 5 3 2 7 7 Si 1.86793 * 120.00191 * 191.20485 * 5 3 2 8 8 H 1.48501 * 109.47116 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46985 * 119.99940 * 7 5 3 10 10 H 1.48504 * 109.47321 * 240.00335 * 7 5 3 11 11 C 1.46501 * 119.99985 * 180.26904 * 2 1 3 12 12 C 1.50702 * 109.47273 * 269.72684 * 11 2 1 13 13 C 1.38598 * 120.79454 * 259.71753 * 12 11 2 14 14 C 1.38315 * 119.23266 * 179.77623 * 13 12 11 15 15 Cl 1.73603 * 119.56417 * 180.25122 * 14 13 12 16 16 N 1.31990 * 120.86640 * 0.51564 * 14 13 12 17 17 C 1.31924 * 121.74688 * 359.73818 * 16 14 13 18 18 Cl 1.73597 * 119.66600 * 180.02562 * 17 16 14 19 19 C 1.38850 * 120.67092 * 359.97438 * 17 16 14 20 20 O 1.35961 * 120.46478 * 180.02562 * 19 17 16 21 21 H 1.09001 * 109.47077 * 274.17496 * 1 2 3 22 22 H 1.08993 * 109.47019 * 34.17737 * 1 2 3 23 23 H 1.08999 * 109.47266 * 154.17805 * 1 2 3 24 24 H 0.96998 * 119.99825 * 179.97438 * 6 5 3 25 25 H 1.09006 * 109.46872 * 29.72588 * 11 2 1 26 26 H 1.09000 * 109.46715 * 149.72639 * 11 2 1 27 27 H 1.07994 * 120.38393 * 0.02562 * 13 12 11 28 28 H 0.96698 * 114.00103 * 269.97931 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1681 1.2214 -0.3575 5 6 1.5346 2.3425 0.4593 6 7 0.3847 2.2682 1.0954 7 14 2.3389 4.0042 0.1747 8 1 3.6161 3.8168 -0.5593 9 1 1.4300 4.8634 -0.6258 10 1 2.6098 4.6536 1.4825 11 6 2.1975 -1.2687 -0.0060 12 6 2.4546 -1.7071 1.4128 13 6 3.6900 -1.5011 2.0063 14 6 3.8891 -1.9121 3.3119 15 17 5.4311 -1.6525 4.0659 16 7 2.9237 -2.5038 3.9902 17 6 1.7359 -2.7226 3.4596 18 17 0.5051 -3.5049 4.4013 19 6 1.4598 -2.3326 2.1559 20 8 0.2340 -2.5597 1.6134 21 1 -0.3633 0.0748 1.0249 22 1 -0.3633 0.8501 -0.5773 23 1 -0.3634 -0.9250 -0.4476 24 1 -0.0449 3.0763 1.4167 25 1 1.6062 -2.0272 -0.5191 26 1 3.1478 -1.1371 -0.5234 27 1 4.4867 -1.0216 1.4571 28 1 0.1551 -3.4116 1.1626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237524428.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:39 Heat of formation + Delta-G solvation = 5.580582 kcal Electronic energy + Delta-G solvation = -17212.108124 eV Core-core repulsion = 14123.227468 eV Total energy + Delta-G solvation = -3088.880656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28640 -37.26334 -36.54519 -36.18377 -35.69287 -32.75162 -30.85097 -29.55109 -26.67367 -25.93913 -23.22007 -22.70810 -20.77120 -18.25437 -17.32348 -16.88204 -16.53068 -15.46091 -14.88360 -14.60496 -14.02724 -13.63876 -13.42280 -13.23286 -12.79624 -12.14005 -11.72027 -11.51609 -11.29632 -11.14632 -11.04244 -10.91126 -10.88877 -10.74637 -10.37868 -10.12651 -10.11067 -9.42548 -9.19482 -8.72358 -8.39717 -6.99097 -5.91733 -3.34469 1.00829 1.30910 1.71505 2.25355 3.28629 3.35650 3.37814 3.64968 4.23721 4.35841 4.80370 5.13951 5.24482 5.40965 5.41624 5.50801 5.82446 6.03162 6.31071 6.47095 6.60783 6.76111 7.31248 7.62320 7.63435 7.76559 7.81757 8.19014 9.02722 9.63262 10.11395 11.10802 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.007213 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.017261 B = 3881.201928 C = 4868.708729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.576 5.576 3 C -0.262 4.262 4 H 0.075 0.925 5 C 0.007 3.993 6 N -0.892 5.892 7 Si 0.908 3.092 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.288 1.288 11 C 0.185 3.815 12 C -0.047 4.047 13 C -0.128 4.128 14 C 0.181 3.819 15 Cl -0.037 7.037 16 N -0.482 5.482 17 C 0.163 3.837 18 Cl -0.030 7.030 19 C 0.087 3.913 20 O -0.463 6.463 21 H 0.034 0.966 22 H 0.045 0.955 23 H 0.004 0.996 24 H 0.256 0.744 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.149 0.851 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -11.046 0.538 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.294 5.294 3 C -0.391 4.391 4 H 0.092 0.908 5 C -0.193 4.193 6 N -0.534 5.534 7 Si 0.738 3.262 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.214 1.214 11 C 0.057 3.943 12 C -0.061 4.061 13 C -0.151 4.151 14 C 0.017 3.983 15 Cl -0.009 7.009 16 N -0.198 5.198 17 C -0.001 4.001 18 Cl -0.002 7.002 19 C 0.037 3.963 20 O -0.271 6.271 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.023 0.977 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.166 0.834 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.648 -10.597 1.754 11.344 hybrid contribution 0.305 0.820 -0.368 0.949 sum 3.954 -9.777 1.386 10.637 Atomic orbital electron populations 1.20855 0.81200 0.95784 0.99893 1.44357 1.02594 0.99921 1.82530 1.19371 0.98814 0.84801 1.36133 0.90750 1.25179 0.97509 0.99058 0.97583 1.70106 1.17288 1.27628 1.38364 0.86127 0.78831 0.83638 0.77642 1.19973 1.21315 1.21446 1.20046 0.97410 0.89305 0.87555 1.22194 0.89978 0.90930 1.03031 1.21689 0.98823 1.01271 0.93271 1.21290 0.88093 0.98918 0.90008 1.98380 1.24559 1.94632 1.83288 1.66029 0.99622 1.16162 1.38029 1.21837 0.89252 0.99171 0.89874 1.98380 1.49920 1.78341 1.73555 1.18705 0.86887 1.00280 0.90465 1.85030 1.26766 1.41182 1.74086 0.94723 0.93617 0.97713 0.93328 0.92312 0.91778 0.83369 0.76225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.93 8.09 59.85 0.48 4.42 15 2 N -0.58 -13.46 2.91 -182.50 -0.53 -13.99 15 3 C -0.26 -6.73 9.67 -15.06 -0.15 -6.88 15 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 15 5 C 0.01 0.19 5.13 -17.43 -0.09 0.11 15 6 N -0.89 -25.34 10.58 55.49 0.59 -24.75 15 7 Si 0.91 21.06 29.57 -169.99 -5.03 16.03 15 8 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 11 C 0.18 3.38 5.58 -5.19 -0.03 3.35 15 12 C -0.05 -0.86 5.51 -104.19 -0.57 -1.43 15 13 C -0.13 -2.21 9.54 -39.42 -0.38 -2.58 15 14 C 0.18 3.16 7.27 -17.46 -0.13 3.03 15 15 Cl -0.04 -0.56 29.10 -51.86 -1.51 -2.07 15 16 N -0.48 -8.93 10.31 -7.39 -0.08 -9.01 15 17 C 0.16 2.92 7.29 -17.29 -0.13 2.79 15 18 Cl -0.03 -0.48 28.66 -51.86 -1.49 -1.96 15 19 C 0.09 1.53 6.70 -39.06 -0.26 1.27 15 20 O -0.46 -7.34 11.35 -19.62 -0.22 -7.56 15 21 H 0.03 0.92 7.42 -51.93 -0.39 0.54 15 22 H 0.05 1.16 7.19 -51.93 -0.37 0.79 15 23 H 0.00 0.09 7.78 -51.93 -0.40 -0.32 15 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 25 H 0.06 0.93 7.64 -51.93 -0.40 0.53 15 26 H 0.06 1.09 7.93 -51.93 -0.41 0.67 15 27 H 0.15 2.30 8.06 -52.49 -0.42 1.88 15 28 H 0.38 3.91 9.06 45.56 0.41 4.33 15 LS Contribution 279.83 15.07 4.22 4.22 Total: -1.00 -30.03 279.83 -6.82 -36.84 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -1.53 Total: -1.83 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.24 Total: 4.07 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.02 Total: -47.75 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.22 Total: -7.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -3.00 Total: -4.03 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.03 -6.82 -36.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237524428.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.425 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds