Wall clock time and date at job start Mon Mar 30 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00100 * 2 1 4 4 H 1.07994 * 119.99948 * 202.47413 * 3 2 1 5 5 C 1.38817 * 120.00068 * 22.46207 * 3 2 1 6 6 N 1.31622 * 119.99745 * 11.20618 * 5 3 2 7 7 Si 1.86793 * 120.00191 * 191.20485 * 5 3 2 8 8 H 1.48501 * 109.47116 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46985 * 119.99940 * 7 5 3 10 10 H 1.48504 * 109.47321 * 240.00335 * 7 5 3 11 11 C 1.46501 * 119.99985 * 180.26904 * 2 1 3 12 12 C 1.50702 * 109.47273 * 269.72684 * 11 2 1 13 13 C 1.38598 * 120.79454 * 259.71753 * 12 11 2 14 14 C 1.38315 * 119.23266 * 179.77623 * 13 12 11 15 15 Cl 1.73603 * 119.56417 * 180.25122 * 14 13 12 16 16 N 1.31990 * 120.86640 * 0.51564 * 14 13 12 17 17 C 1.31924 * 121.74688 * 359.73818 * 16 14 13 18 18 Cl 1.73597 * 119.66600 * 180.02562 * 17 16 14 19 19 C 1.38850 * 120.67092 * 359.97438 * 17 16 14 20 20 O 1.35961 * 120.46478 * 180.02562 * 19 17 16 21 21 H 1.09001 * 109.47077 * 274.17496 * 1 2 3 22 22 H 1.08993 * 109.47019 * 34.17737 * 1 2 3 23 23 H 1.08999 * 109.47266 * 154.17805 * 1 2 3 24 24 H 0.96998 * 119.99825 * 179.97438 * 6 5 3 25 25 H 1.09006 * 109.46872 * 29.72588 * 11 2 1 26 26 H 1.09000 * 109.46715 * 149.72639 * 11 2 1 27 27 H 1.07994 * 120.38393 * 0.02562 * 13 12 11 28 28 H 0.96698 * 114.00103 * 269.97931 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1681 1.2214 -0.3575 5 6 1.5346 2.3425 0.4593 6 7 0.3847 2.2682 1.0954 7 14 2.3389 4.0042 0.1747 8 1 3.6161 3.8168 -0.5593 9 1 1.4300 4.8634 -0.6258 10 1 2.6098 4.6536 1.4825 11 6 2.1975 -1.2687 -0.0060 12 6 2.4546 -1.7071 1.4128 13 6 3.6900 -1.5011 2.0063 14 6 3.8891 -1.9121 3.3119 15 17 5.4311 -1.6525 4.0659 16 7 2.9237 -2.5038 3.9902 17 6 1.7359 -2.7226 3.4596 18 17 0.5051 -3.5049 4.4013 19 6 1.4598 -2.3326 2.1559 20 8 0.2340 -2.5597 1.6134 21 1 -0.3633 0.0748 1.0249 22 1 -0.3633 0.8501 -0.5773 23 1 -0.3634 -0.9250 -0.4476 24 1 -0.0449 3.0763 1.4167 25 1 1.6062 -2.0272 -0.5191 26 1 3.1478 -1.1371 -0.5234 27 1 4.4867 -1.0216 1.4571 28 1 0.1551 -3.4116 1.1626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237524428.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:38 Heat of formation + Delta-G solvation = -14.846230 kcal Electronic energy + Delta-G solvation = -17212.993897 eV Core-core repulsion = 14123.227468 eV Total energy + Delta-G solvation = -3089.766429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66679 -38.58545 -37.90724 -37.49451 -37.28728 -34.35227 -32.58290 -30.93044 -28.25948 -27.80801 -24.62138 -24.30418 -22.38323 -19.56154 -18.93902 -18.35538 -18.08880 -16.91601 -16.60305 -15.94334 -15.47935 -15.28598 -15.06580 -14.87175 -14.18323 -13.45240 -13.40277 -13.06502 -12.86611 -12.73535 -12.57346 -12.42443 -12.28277 -12.17039 -12.00372 -11.95971 -11.84103 -10.84142 -10.67414 -10.60591 -9.72419 -8.85958 -7.84898 -5.32409 -0.34553 -0.07736 0.40104 0.92762 1.46529 1.48757 1.57799 2.27457 2.51669 2.95119 3.29195 3.46542 3.78023 3.84744 3.97036 4.07499 4.47510 4.64574 4.91669 4.98101 5.12165 5.22591 5.40083 5.66513 5.84502 6.28374 6.29856 6.72912 7.12473 7.82716 8.25487 9.17462 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.007213 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.017261 B = 3881.201928 C = 4868.708729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.083 0.917 5 C -0.051 4.051 6 N -0.935 5.935 7 Si 0.963 3.037 8 H -0.258 1.258 9 H -0.293 1.293 10 H -0.299 1.299 11 C 0.185 3.815 12 C -0.056 4.056 13 C -0.124 4.124 14 C 0.168 3.832 15 Cl -0.017 7.017 16 N -0.491 5.491 17 C 0.147 3.853 18 Cl -0.014 7.014 19 C 0.096 3.904 20 O -0.472 6.472 21 H -0.003 1.003 22 H 0.013 0.987 23 H 0.037 0.963 24 H 0.246 0.754 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.166 0.834 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -12.414 0.099 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.317 5.317 3 C -0.390 4.390 4 H 0.101 0.899 5 C -0.246 4.246 6 N -0.581 5.581 7 Si 0.792 3.208 8 H -0.182 1.182 9 H -0.220 1.220 10 H -0.227 1.227 11 C 0.059 3.941 12 C -0.069 4.069 13 C -0.146 4.146 14 C 0.004 3.996 15 Cl 0.012 6.988 16 N -0.207 5.207 17 C -0.018 4.018 18 Cl 0.014 6.986 19 C 0.046 3.954 20 O -0.284 6.284 21 H 0.015 0.985 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.184 0.816 28 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.935 -12.035 1.305 13.073 hybrid contribution -0.009 0.954 -0.189 0.972 sum 4.926 -11.082 1.116 12.178 Atomic orbital electron populations 1.20472 0.81979 0.95928 0.97274 1.44328 1.02415 1.01026 1.83909 1.19689 0.98770 0.85949 1.34576 0.89888 1.25830 0.98259 1.01997 0.98542 1.70278 1.19174 1.27370 1.41231 0.85255 0.78504 0.80250 0.76804 1.18182 1.22014 1.22664 1.20174 0.98203 0.87918 0.87843 1.22202 0.90632 0.91788 1.02284 1.21950 0.99158 1.00173 0.93327 1.21504 0.88810 0.98856 0.90431 1.98385 1.22991 1.94488 1.82980 1.66100 1.00069 1.16027 1.38519 1.22056 0.89560 0.99745 0.90451 1.98381 1.49134 1.77930 1.73153 1.18786 0.86953 0.99249 0.90458 1.84964 1.25859 1.43242 1.74312 0.98454 0.96783 0.94427 0.94472 0.89426 0.90074 0.81630 0.73132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 8.84 8.09 127.77 1.03 9.88 15 2 N -0.60 -27.11 2.91 -731.30 -2.13 -29.24 15 3 C -0.26 -13.14 9.67 84.03 0.81 -12.32 15 4 H 0.08 3.95 7.84 -2.91 -0.02 3.93 15 5 C -0.05 -2.74 5.13 84.86 0.44 -2.30 15 6 N -0.93 -54.67 10.58 21.65 0.23 -54.44 15 7 Si 0.96 43.71 29.57 68.60 2.03 45.74 15 8 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 9 H -0.29 -13.42 7.11 99.48 0.71 -12.71 15 10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 15 11 C 0.19 6.24 5.58 85.63 0.48 6.72 15 12 C -0.06 -1.90 5.51 -19.59 -0.11 -2.01 15 13 C -0.12 -3.98 9.54 22.37 0.21 -3.77 15 14 C 0.17 5.52 7.27 84.69 0.62 6.14 15 15 Cl -0.02 -0.48 29.10 -2.72 -0.08 -0.55 15 16 N -0.49 -17.32 10.31 -177.29 -1.83 -19.15 15 17 C 0.15 4.97 7.29 84.83 0.62 5.59 15 18 Cl -0.01 -0.43 28.66 -2.72 -0.08 -0.51 15 19 C 0.10 3.16 6.70 22.61 0.15 3.31 15 20 O -0.47 -13.84 11.35 -93.11 -1.06 -14.90 15 21 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 15 22 H 0.01 0.71 7.19 -2.39 -0.02 0.69 15 23 H 0.04 1.46 7.78 -2.39 -0.02 1.44 15 24 H 0.25 14.16 8.31 -92.71 -0.77 13.39 15 25 H 0.09 2.43 7.64 -2.38 -0.02 2.42 15 26 H 0.08 2.46 7.93 -2.39 -0.02 2.44 15 27 H 0.17 4.65 8.06 -2.91 -0.02 4.63 15 28 H 0.41 7.06 9.06 -74.06 -0.67 6.38 15 Total: -1.00 -64.60 279.83 1.88 -62.72 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: 0.54 Total: -0.90 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 4.25 Total: 11.24 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.73 Total: -102.83 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -1.06 Total: -14.90 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.16 Total: -1.06 kcal Total: -64.60 1.88 -62.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237524428.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.873 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds