Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86802 * 119.99878 * 2 1 4 4 H 1.48509 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47167 * 299.99364 * 3 2 1 6 6 H 1.48502 * 109.47353 * 59.99800 * 3 2 1 7 7 C 1.39999 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00187 * 197.95401 * 7 2 1 9 9 C 1.41013 * 119.99524 * 17.96549 * 7 2 1 10 10 C 1.40943 * 120.11027 * 204.67091 * 9 7 2 11 11 C 1.36241 * 119.87981 * 180.27528 * 10 9 7 12 12 C 1.39967 * 120.11656 * 359.49883 * 11 10 9 13 13 C 1.47933 * 119.88328 * 180.27913 * 12 11 10 14 14 C 1.39637 * 120.15218 * 129.94607 * 13 12 11 15 15 C 1.37894 * 119.90031 * 179.81093 * 14 13 12 16 16 C 1.38437 * 120.21485 * 0.44255 * 15 14 13 17 17 C 1.38394 * 120.30992 * 359.78708 * 16 15 14 18 18 Cl 1.73603 * 119.95014 * 179.97438 * 17 16 15 19 19 C 1.38342 * 120.09533 * 0.02562 * 17 16 15 20 20 F 1.35099 * 120.10370 * 179.97438 * 19 17 16 21 21 C 1.39966 * 120.22955 * 0.49878 * 12 11 10 22 22 C 1.36236 * 120.12369 * 359.75877 * 21 12 11 23 23 H 0.96998 * 119.99903 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.06442 * 359.97438 * 10 9 7 25 25 H 1.07992 * 119.94297 * 179.72549 * 11 10 9 26 26 H 1.08005 * 120.05310 * 0.02562 * 14 13 12 27 27 H 1.07997 * 119.88916 * 180.21077 * 15 14 13 28 28 H 1.07995 * 119.84399 * 179.76558 * 16 15 14 29 29 H 1.08006 * 119.93900 * 179.77331 * 21 12 11 30 30 H 1.07998 * 120.06151 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8833 2.3965 1.2125 7 6 2.0081 -1.2124 0.0005 8 1 3.0487 -1.2351 0.2889 9 6 1.3545 -2.4040 -0.3756 10 6 1.8270 -3.6472 0.0910 11 6 1.1953 -4.7959 -0.2799 12 6 0.0728 -4.7422 -1.1143 13 6 -0.6128 -5.9923 -1.5088 14 6 -1.9972 -6.1076 -1.3676 15 6 -2.6314 -7.2738 -1.7406 16 6 -1.8990 -8.3342 -2.2462 17 6 -0.5259 -8.2312 -2.3855 18 17 0.3835 -9.5670 -3.0199 19 6 0.1231 -7.0658 -2.0189 20 9 1.4635 -6.9652 -2.1543 21 6 -0.4005 -3.5102 -1.5804 22 6 0.2270 -2.3560 -1.2197 23 1 -0.4850 0.8400 -0.0004 24 1 2.6911 -3.6895 0.7375 25 1 1.5591 -5.7493 0.0735 26 1 -2.5708 -5.2834 -0.9700 27 1 -3.7026 -7.3616 -1.6345 28 1 -2.4014 -9.2462 -2.5330 29 1 -1.2648 -3.4745 -2.2270 30 1 -0.1388 -1.4059 -1.5803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238957534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = -30.113609 kcal Electronic energy + Delta-G solvation = -17736.041877 eV Core-core repulsion = 14628.126292 eV Total energy + Delta-G solvation = -3107.915584 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.85937 -40.27887 -39.07988 -37.52329 -35.74988 -33.14633 -31.58710 -31.22035 -30.41923 -27.10104 -24.06217 -23.80209 -22.55538 -21.86158 -19.33322 -18.72573 -17.60353 -17.41993 -17.05840 -16.72173 -15.91089 -15.62731 -15.37418 -15.22950 -14.45632 -14.23928 -14.00999 -13.93941 -13.74188 -13.31895 -13.12387 -12.82678 -12.52101 -12.45288 -12.40248 -12.21148 -11.91916 -11.51065 -11.36737 -11.12202 -10.02180 -9.67685 -9.52366 -9.06136 -8.72711 -6.38847 -0.02155 0.05039 0.89622 1.02262 1.14611 1.38286 1.49259 1.53617 2.17937 2.49265 2.71427 3.17507 3.66437 3.77244 4.02251 4.13377 4.29315 4.38780 4.41531 4.66810 4.92723 4.97363 5.03834 5.07953 5.22941 5.30137 5.32012 5.44805 5.64179 5.73461 5.97195 6.03159 6.11473 6.28352 6.60045 6.84064 6.94411 8.23210 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.039467 B = 0.004068 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.276219 B = 6880.667628 C = 7384.252767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.038 3.962 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.488 4.488 8 H 0.078 0.922 9 C 0.090 3.910 10 C -0.247 4.247 11 C -0.063 4.063 12 C -0.205 4.205 13 C -0.035 4.035 14 C -0.097 4.097 15 C -0.096 4.096 16 C -0.095 4.095 17 C -0.076 4.076 18 Cl -0.058 7.058 19 C 0.071 3.929 20 F -0.143 7.143 21 C -0.073 4.073 22 C -0.192 4.192 23 H 0.293 0.707 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.142 0.858 27 H 0.178 0.822 28 H 0.172 0.828 29 H 0.113 0.887 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 -10.802 -3.849 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.517 4.517 8 H 0.096 0.904 9 C 0.087 3.913 10 C -0.267 4.267 11 C -0.081 4.081 12 C -0.207 4.207 13 C -0.036 4.036 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.103 4.103 18 Cl -0.029 7.029 19 C 0.051 3.949 20 F -0.121 7.121 21 C -0.091 4.091 22 C -0.211 4.211 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.160 0.840 27 H 0.195 0.805 28 H 0.189 0.811 29 H 0.131 0.869 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.430 -10.768 -3.891 13.131 hybrid contribution 1.072 0.761 0.108 1.319 sum -5.358 -10.007 -3.783 11.965 Atomic orbital electron populations 1.69847 1.09054 1.31052 1.33558 1.26818 0.95533 1.04605 0.90964 0.85125 0.79369 0.75858 0.79203 1.18294 1.18598 1.18728 1.19931 0.98566 0.92554 1.40613 0.90387 1.18047 0.91657 0.92900 0.88668 1.20831 1.04769 0.93132 1.07952 1.20491 0.94388 0.96672 0.96548 1.18124 1.01485 0.91385 1.09664 1.19005 0.94446 0.91918 0.98271 1.21560 0.91781 0.99556 0.98647 1.21490 1.02063 0.91045 0.96821 1.21322 0.89480 1.01396 0.99154 1.21074 0.94264 0.88807 1.06173 1.98356 1.74868 1.44475 1.85227 1.17871 0.77573 0.95020 1.04475 1.91457 1.30352 1.96525 1.93793 1.20639 0.98428 0.91592 0.98449 1.20965 1.00465 0.97268 1.02438 0.89612 0.88416 0.88179 0.83990 0.80507 0.81088 0.86858 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.82 10.96 21.84 0.24 -40.58 16 2 C 0.04 1.85 5.13 85.27 0.44 2.29 16 3 Si 0.98 36.94 29.60 68.60 2.03 38.97 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.49 -26.11 9.03 23.38 0.21 -25.90 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 9 C 0.09 4.88 5.57 -21.28 -0.12 4.77 16 10 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 11 C -0.06 -2.94 8.79 22.22 0.20 -2.75 16 12 C -0.21 -9.10 5.35 -19.87 -0.11 -9.21 16 13 C -0.04 -1.28 5.47 -20.00 -0.11 -1.39 16 14 C -0.10 -2.74 9.51 22.53 0.21 -2.52 16 15 C -0.10 -1.94 10.03 22.24 0.22 -1.72 16 16 C -0.10 -1.99 9.82 22.35 0.22 -1.77 16 17 C -0.08 -2.12 6.32 22.33 0.14 -1.98 16 18 Cl -0.06 -1.50 28.61 -2.72 -0.08 -1.57 16 19 C 0.07 2.49 7.13 22.67 0.16 2.65 16 20 F -0.14 -5.66 15.44 44.97 0.69 -4.97 16 21 C -0.07 -3.35 9.44 22.22 0.21 -3.14 16 22 C -0.19 -10.01 8.63 22.46 0.19 -9.82 16 23 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 24 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 25 H 0.10 4.35 7.75 -2.91 -0.02 4.33 16 26 H 0.14 3.78 8.04 -2.91 -0.02 3.75 16 27 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 28 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.11 4.56 8.04 -2.91 -0.02 4.54 16 30 H 0.11 5.74 6.16 -2.91 -0.02 5.73 16 Total: -1.00 -59.67 286.24 6.15 -53.52 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.17 Total: 17.51 kcal Atomic # 6 Polarization: -64.97 SS G_CDS: 2.09 Total: -62.88 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.24 Total: -40.58 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.69 Total: -4.97 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.57 kcal Total: -59.67 6.15 -53.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238957534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.407 kcal (2) G-P(sol) polarization free energy of solvation -59.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds