Wall clock time and date at job start Mon Mar 30 2020 02:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86806 * 119.99853 * 2 1 4 4 H 1.48491 * 109.47251 * 275.39450 * 3 2 1 5 5 H 1.48504 * 109.46855 * 35.39387 * 3 2 1 6 6 H 1.48505 * 109.47091 * 155.38930 * 3 2 1 7 7 C 1.40061 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99964 * 341.90208 * 7 2 1 9 9 C 1.40864 * 120.00175 * 161.90535 * 7 2 1 10 10 C 1.40748 * 120.33350 * 329.84163 * 9 7 2 11 11 C 1.36429 * 119.99011 * 179.74174 * 10 9 7 12 12 C 1.38936 * 120.69155 * 0.25816 * 11 10 9 13 13 C 1.38071 * 120.67687 * 359.97438 * 12 11 10 14 14 C 1.39192 * 119.98044 * 0.02562 * 13 12 11 15 15 C 1.47819 * 120.33536 * 180.02562 * 14 13 12 16 16 C 1.39688 * 120.15598 * 64.72836 * 15 14 13 17 17 C 1.37879 * 119.89642 * 179.78714 * 16 15 14 18 18 C 1.38446 * 120.21725 * 0.48788 * 17 16 15 19 19 C 1.38395 * 120.32629 * 359.74370 * 18 17 16 20 20 Cl 1.73598 * 119.95358 * 180.02562 * 19 18 17 21 21 C 1.38336 * 120.09517 * 0.02562 * 19 18 17 22 22 F 1.35095 * 120.10658 * 179.97438 * 21 19 18 23 23 H 0.97003 * 120.00339 * 359.97438 * 1 2 3 24 24 H 1.08007 * 120.00358 * 0.02770 * 10 9 7 25 25 H 1.07999 * 119.65703 * 180.22949 * 11 10 9 26 26 H 1.07994 * 119.66310 * 179.97438 * 12 11 10 27 27 H 1.08000 * 120.00826 * 180.02562 * 13 12 11 28 28 H 1.08002 * 120.04852 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.89108 * 180.22847 * 17 16 15 30 30 H 1.08006 * 119.83806 * 179.76569 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3753 2.1123 -1.3938 5 1 1.5007 2.6171 0.8109 6 1 3.5917 1.4101 0.5831 7 6 2.0082 -1.2129 -0.0005 8 1 1.5083 -2.1253 0.2896 9 6 3.3645 -1.2429 -0.3794 10 6 3.8623 -0.3150 -1.3135 11 6 5.1784 -0.3470 -1.6715 12 6 6.0386 -1.2925 -1.1271 13 6 5.5792 -2.2189 -0.2121 14 6 4.2416 -2.2117 0.1731 15 6 3.7415 -3.1995 1.1524 16 6 4.2143 -3.1859 2.4668 17 6 3.7409 -4.1070 3.3770 18 6 2.8058 -5.0517 2.9901 19 6 2.3346 -5.0766 1.6890 20 17 1.1616 -6.2650 1.2145 21 6 2.7970 -4.1556 0.7661 22 9 2.3377 -4.1800 -0.5041 23 1 -0.4851 0.8400 0.0004 24 1 3.2035 0.4251 -1.7432 25 1 5.5555 0.3698 -2.3858 26 1 7.0773 -1.3030 -1.4226 27 1 6.2574 -2.9488 0.2045 28 1 4.9468 -2.4526 2.7704 29 1 4.1038 -4.0941 4.3941 30 1 2.4419 -5.7728 3.7072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238958967.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:34 Heat of formation + Delta-G solvation = -13.959047 kcal Electronic energy + Delta-G solvation = -18534.418280 eV Core-core repulsion = 15427.203210 eV Total energy + Delta-G solvation = -3107.215070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.16070 -38.86204 -37.51768 -36.12787 -33.73022 -31.93805 -30.53850 -29.94554 -28.34789 -25.26716 -22.92878 -22.18793 -21.24168 -19.99500 -17.54100 -17.19909 -16.27331 -15.98904 -15.38188 -15.09103 -14.46218 -14.08938 -13.87264 -13.74439 -12.98246 -12.75273 -12.63591 -12.48350 -12.09968 -12.00765 -11.48946 -11.17485 -11.07930 -10.89217 -10.87440 -10.56222 -10.34173 -9.93633 -9.66907 -9.26893 -8.46161 -8.22681 -7.75619 -7.53659 -7.04978 -4.58080 1.42510 1.51226 2.32119 2.50663 2.62420 3.04598 3.14611 3.24730 3.89012 3.91524 4.40887 4.64300 5.11555 5.23264 5.36331 5.50849 5.56194 5.91652 5.97829 6.07784 6.24208 6.36700 6.43794 6.57033 6.58508 6.73171 6.85087 7.08140 7.14606 7.29695 7.53410 7.65261 7.77690 8.00883 8.26271 8.55107 8.68221 9.95797 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.007650 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.464643 B = 3659.197206 C = 4309.223803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.434 4.434 8 H 0.095 0.905 9 C 0.114 3.886 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.250 4.250 13 C -0.051 4.051 14 C -0.187 4.187 15 C 0.002 3.998 16 C -0.090 4.090 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.074 4.074 20 Cl -0.068 7.068 21 C 0.119 3.881 22 F -0.117 7.117 23 H 0.287 0.713 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -5.132 5.029 8.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.165 1.165 7 C -0.461 4.461 8 H 0.113 0.887 9 C 0.111 3.889 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.270 4.270 13 C -0.069 4.069 14 C -0.188 4.188 15 C 0.001 3.999 16 C -0.108 4.108 17 C -0.141 4.141 18 C -0.126 4.126 19 C -0.102 4.102 20 Cl -0.040 7.040 21 C 0.099 3.901 22 F -0.095 7.095 23 H 0.098 0.902 24 H 0.120 0.880 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.933 -5.154 4.949 8.682 hybrid contribution -0.142 0.671 -0.345 0.768 sum 4.791 -4.482 4.604 8.015 Atomic orbital electron populations 1.69680 1.08209 1.30520 1.33256 1.26249 0.94731 1.01849 0.90788 0.86330 0.81428 0.79612 0.78998 1.19477 1.21624 1.16540 1.19548 0.93027 0.96248 1.37271 0.88675 1.17575 0.92374 0.90049 0.88941 1.20757 0.95827 1.04536 1.03810 1.20425 0.93766 0.96912 0.97695 1.20257 0.98357 1.01889 1.06466 1.20612 0.93558 0.96643 0.96072 1.18292 0.93421 1.02737 1.04381 1.18768 0.93947 0.92892 0.94315 1.21294 0.99804 0.98297 0.91436 1.20951 0.97885 0.95521 0.99778 1.20780 0.98373 1.00247 0.93239 1.20895 0.98391 0.95572 0.95310 1.98344 1.57288 1.55977 1.92349 1.17654 0.96878 0.95834 0.79735 1.91541 1.86912 1.95498 1.35575 0.90206 0.88029 0.88812 0.88653 0.88531 0.84927 0.85178 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.89 13.93 55.55 0.77 -20.12 16 2 C 0.08 2.19 5.41 -17.32 -0.09 2.09 16 3 Si 0.91 20.31 24.52 -169.99 -4.17 16.15 16 4 H -0.27 -5.82 6.71 56.52 0.38 -5.44 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.24 -5.50 6.87 56.52 0.39 -5.11 16 7 C -0.43 -11.56 8.63 -37.91 -0.33 -11.89 16 8 H 0.10 2.71 5.78 -52.48 -0.30 2.40 16 9 C 0.11 2.84 5.00 -106.56 -0.53 2.31 16 10 C -0.23 -5.47 7.11 -39.29 -0.28 -5.74 16 11 C -0.07 -1.48 9.96 -39.98 -0.40 -1.87 16 12 C -0.25 -5.05 10.03 -39.38 -0.40 -5.45 16 13 C -0.05 -1.04 9.73 -39.29 -0.38 -1.42 16 14 C -0.19 -4.23 5.05 -104.23 -0.53 -4.76 16 15 C 0.00 0.04 4.68 -104.84 -0.49 -0.45 16 16 C -0.09 -1.52 9.74 -39.17 -0.38 -1.90 16 17 C -0.12 -1.75 10.03 -39.64 -0.40 -2.15 16 18 C -0.11 -1.61 9.82 -39.45 -0.39 -1.99 16 19 C -0.07 -1.33 6.32 -39.49 -0.25 -1.58 16 20 Cl -0.07 -1.13 28.61 -51.86 -1.48 -2.62 16 21 C 0.12 2.49 5.93 -38.95 -0.23 2.26 16 22 F -0.12 -2.72 15.32 2.25 0.03 -2.68 16 23 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 24 H 0.10 2.40 4.76 -52.48 -0.25 2.15 16 25 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 277.70 15.07 4.18 4.18 Total: -1.00 -27.45 277.70 -7.99 -35.45 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.26 Total: 2.19 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -5.07 Total: -32.54 kcal Atomic # 7 Polarization: -20.89 SS G_CDS: 0.77 Total: -20.12 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.03 Total: -2.68 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.17 Total: 16.15 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.48 Total: -2.62 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.45 -7.99 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238958967.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.486 kcal (2) G-P(sol) polarization free energy of solvation -27.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds