Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48496 * 109.47306 * 275.41019 * 3 2 1 5 5 H 1.48496 * 109.46922 * 35.41466 * 3 2 1 6 6 H 1.48505 * 109.47057 * 155.41372 * 3 2 1 7 7 C 1.39932 * 119.99316 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00497 * 341.73638 * 7 2 1 9 9 C 1.41426 * 119.99584 * 161.73643 * 7 2 1 10 10 C 1.40791 * 120.18590 * 330.17821 * 9 7 2 11 11 C 1.37687 * 119.98848 * 180.02562 * 10 9 7 12 12 C 1.38432 * 120.38249 * 0.02562 * 11 10 9 13 13 C 1.39700 * 120.37453 * 359.71892 * 12 11 10 14 14 C 1.48383 * 119.99831 * 180.30590 * 13 12 11 15 15 C 1.39313 * 120.12704 * 129.97784 * 14 13 12 16 16 C 1.38115 * 119.89318 * 179.81190 * 15 14 13 17 17 Cl 1.73599 * 119.92838 * 180.23269 * 16 15 14 18 18 C 1.38469 * 120.14356 * 0.43936 * 16 15 14 19 19 C 1.38236 * 120.25415 * 359.79385 * 18 16 15 20 20 C 1.38281 * 120.11329 * 359.97438 * 19 18 16 21 21 F 1.35095 * 120.07818 * 180.02562 * 20 19 18 22 22 C 1.38779 * 119.99916 * 0.55830 * 13 12 11 23 23 H 0.97001 * 119.99630 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.00769 * 0.04097 * 10 9 7 25 25 H 1.08002 * 119.80703 * 180.02562 * 11 10 9 26 26 H 1.07996 * 119.81252 * 179.97438 * 12 11 10 27 27 H 1.08007 * 120.05665 * 0.02562 * 15 14 13 28 28 H 1.07994 * 119.87259 * 179.76459 * 18 16 15 29 29 H 1.08001 * 119.94797 * 179.97438 * 19 18 16 30 30 H 1.07999 * 120.18827 * 179.72455 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3756 2.1124 -1.3938 5 1 1.5018 2.6168 0.8113 6 1 3.5925 1.4097 0.5825 7 6 2.0078 -1.2119 0.0005 8 1 1.5086 -2.1235 0.2940 9 6 3.3686 -1.2430 -0.3833 10 6 3.8625 -0.3112 -1.3160 11 6 5.1880 -0.3455 -1.6872 12 6 6.0416 -1.2930 -1.1487 13 6 5.5693 -2.2216 -0.2180 14 6 6.4931 -3.2293 0.3589 15 6 6.5548 -3.4125 1.7386 16 6 7.4136 -4.3545 2.2702 17 17 7.4867 -4.5877 3.9889 18 6 8.2195 -5.1103 1.4355 19 6 8.1667 -4.9301 0.0660 20 6 7.3072 -3.9933 -0.4779 21 9 7.2559 -3.8181 -1.8165 22 6 4.2349 -2.2050 0.1629 23 1 -0.4850 0.8401 -0.0004 24 1 3.2020 0.4305 -1.7400 25 1 5.5638 0.3710 -2.4026 26 1 7.0794 -1.3118 -1.4467 27 1 5.9295 -2.8212 2.3913 28 1 8.8922 -5.8430 1.8561 29 1 8.7978 -5.5220 -0.5804 30 1 3.8655 -2.9243 0.8788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241330708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = -30.826016 kcal Electronic energy + Delta-G solvation = -17817.677625 eV Core-core repulsion = 14709.731149 eV Total energy + Delta-G solvation = -3107.946476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.91098 -40.48130 -39.22223 -37.42426 -35.64473 -33.65133 -32.25500 -31.38112 -29.93293 -27.12738 -24.75994 -23.79552 -22.37519 -22.18266 -19.47446 -18.50016 -17.78612 -17.55931 -17.17273 -16.75861 -16.38392 -15.68394 -15.58271 -15.03642 -14.63539 -14.47291 -14.31957 -14.20798 -13.90937 -13.58144 -13.32757 -12.87435 -12.58947 -12.54212 -12.31210 -12.13031 -11.87952 -11.65091 -11.52880 -11.07293 -10.33031 -9.72160 -9.59391 -9.13662 -8.92179 -6.54419 -0.21907 -0.00683 0.74965 0.80516 1.06960 1.25259 1.39261 1.47601 2.10529 2.35756 2.58237 3.18262 3.41832 3.53228 3.72106 4.02089 4.14615 4.29557 4.45186 4.50018 4.65726 4.73825 4.90823 4.93989 5.00204 5.05777 5.11937 5.24941 5.52102 5.63658 5.73213 5.82425 5.89953 6.17048 6.33348 6.67606 6.78342 8.16439 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.005235 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.930505 B = 5347.743030 C = 6170.164046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.050 3.950 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.486 4.486 8 H 0.056 0.944 9 C 0.072 3.928 10 C -0.243 4.243 11 C -0.081 4.081 12 C -0.206 4.206 13 C -0.031 4.031 14 C -0.069 4.069 15 C -0.083 4.083 16 C -0.046 4.046 17 Cl -0.058 7.058 18 C -0.076 4.076 19 C -0.128 4.128 20 C 0.095 3.905 21 F -0.138 7.138 22 C -0.196 4.196 23 H 0.294 0.706 24 H 0.100 0.900 25 H 0.132 0.868 26 H 0.120 0.880 27 H 0.135 0.865 28 H 0.178 0.822 29 H 0.178 0.822 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.044 -6.663 2.931 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.165 4.165 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.070 3.930 10 C -0.262 4.262 11 C -0.099 4.099 12 C -0.225 4.225 13 C -0.032 4.032 14 C -0.070 4.070 15 C -0.102 4.102 16 C -0.073 4.073 17 Cl -0.029 7.029 18 C -0.094 4.094 19 C -0.147 4.147 20 C 0.075 3.925 21 F -0.117 7.117 22 C -0.216 4.216 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.150 0.850 26 H 0.138 0.862 27 H 0.153 0.847 28 H 0.195 0.805 29 H 0.196 0.804 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.753 -6.596 3.055 18.262 hybrid contribution -0.716 0.728 -0.073 1.023 sum 16.037 -5.868 2.982 17.335 Atomic orbital electron populations 1.69723 1.09152 1.31497 1.37076 1.26789 0.95305 1.04113 0.90284 0.85518 0.79628 0.76596 0.79599 1.18146 1.20272 1.17728 1.19437 0.94386 0.95706 1.41978 0.92565 1.17795 0.92654 0.92074 0.90471 1.21243 0.96850 1.04473 1.03615 1.20923 0.92749 0.97821 0.98433 1.20780 0.99462 0.99441 1.02814 1.18485 0.92341 0.95078 0.97248 1.18950 0.97405 0.97429 0.93207 1.21051 0.98230 0.97652 0.93268 1.20918 1.00673 0.99848 0.85889 1.98374 1.97705 1.96228 1.10618 1.21259 0.97990 0.98710 0.91438 1.21337 0.99197 0.98072 0.96053 1.18055 0.98752 0.98526 0.77117 1.91493 1.95393 1.94578 1.30230 1.21164 0.92461 1.03590 1.04362 0.89534 0.88187 0.85005 0.86206 0.84662 0.80486 0.80436 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.77 13.93 21.82 0.30 -46.46 16 2 C 0.05 2.68 5.40 85.25 0.46 3.15 16 3 Si 0.96 42.82 24.52 68.60 1.68 44.50 16 4 H -0.26 -10.71 6.71 99.48 0.67 -10.04 16 5 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.25 -11.52 6.86 99.48 0.68 -10.84 16 7 C -0.49 -27.53 9.57 23.47 0.22 -27.30 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 9 C 0.07 3.75 5.10 -21.32 -0.11 3.64 16 10 C -0.24 -11.54 7.17 22.76 0.16 -11.37 16 11 C -0.08 -3.35 10.01 22.19 0.22 -3.12 16 12 C -0.21 -8.19 8.87 22.67 0.20 -7.99 16 13 C -0.03 -1.29 5.31 -20.09 -0.11 -1.40 16 14 C -0.07 -2.31 5.47 -20.01 -0.11 -2.42 16 15 C -0.08 -2.47 9.28 22.50 0.21 -2.26 16 16 C -0.05 -1.09 6.31 22.30 0.14 -0.95 16 17 Cl -0.06 -1.24 28.95 -2.72 -0.08 -1.31 16 18 C -0.08 -1.38 9.82 22.32 0.22 -1.16 16 19 C -0.13 -2.56 10.01 22.28 0.22 -2.33 16 20 C 0.09 2.74 7.15 22.59 0.16 2.90 16 21 F -0.14 -4.39 15.87 44.97 0.71 -3.68 16 22 C -0.20 -9.24 9.25 22.95 0.21 -9.02 16 23 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 24 H 0.10 4.72 4.72 -2.91 -0.01 4.71 16 25 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 26 H 0.12 4.18 7.75 -2.91 -0.02 4.15 16 27 H 0.14 4.17 8.04 -2.91 -0.02 4.15 16 28 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 29 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.10 4.68 8.04 -2.91 -0.02 4.65 16 Total: -1.00 -60.66 281.75 5.84 -54.82 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.11 Total: 11.77 kcal Atomic # 6 Polarization: -61.75 SS G_CDS: 2.11 Total: -59.64 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.30 Total: -46.46 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.71 Total: -3.68 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.68 Total: 44.50 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.31 kcal Total: -60.66 5.84 -54.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241330708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.990 kcal (2) G-P(sol) polarization free energy of solvation -60.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds