Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86803 * 120.00356 * 2 1 4 4 H 1.48495 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46672 * 300.00040 * 3 2 1 6 6 H 1.48498 * 109.47095 * 59.99694 * 3 2 1 7 7 C 1.40000 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99640 * 197.97099 * 7 2 1 9 9 C 1.41005 * 120.00004 * 17.96444 * 7 2 1 10 10 C 1.40943 * 120.11404 * 24.69038 * 9 7 2 11 11 C 1.36239 * 119.87855 * 180.02562 * 10 9 7 12 12 C 1.39968 * 120.11855 * 359.97393 * 11 10 9 13 13 C 1.47932 * 119.88080 * 179.74796 * 12 11 10 14 14 C 1.39608 * 120.15197 * 129.99963 * 13 12 11 15 15 C 1.38006 * 119.86735 * 179.97438 * 14 13 12 16 16 Cl 1.73594 * 119.91504 * 179.97438 * 15 14 13 17 17 C 1.38564 * 120.17416 * 0.02581 * 15 14 13 18 18 C 1.38279 * 120.31188 * 359.97396 * 17 15 14 19 19 C 1.38226 * 120.13323 * 359.74413 * 18 17 15 20 20 F 1.35103 * 120.09259 * 180.27430 * 19 18 17 21 21 C 1.39962 * 120.23425 * 0.02562 * 12 11 10 22 22 C 1.36240 * 120.11871 * 0.02562 * 21 12 11 23 23 H 0.97003 * 119.99516 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.05911 * 359.97438 * 10 9 7 25 25 H 1.07995 * 119.94057 * 179.97438 * 11 10 9 26 26 H 1.08002 * 120.07309 * 359.97438 * 14 13 12 27 27 H 1.08001 * 119.84099 * 179.97438 * 17 15 14 28 28 H 1.08004 * 119.93198 * 180.02562 * 18 17 15 29 29 H 1.08005 * 119.94088 * 179.97438 * 21 12 11 30 30 H 1.08000 * 120.05546 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7021 1.3463 -0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8834 2.3964 1.2124 7 6 2.0080 -1.2125 0.0005 8 1 3.0485 -1.2351 0.2891 9 6 1.3545 -2.4040 -0.3756 10 6 0.2269 -2.3559 -1.2197 11 6 -0.4012 -3.5101 -1.5797 12 6 0.0719 -4.7420 -1.1132 13 6 -0.6175 -5.9916 -1.5028 14 6 0.1135 -7.0657 -2.0136 15 6 -0.5355 -8.2289 -2.3748 16 17 0.3721 -9.5650 -3.0108 17 6 -1.9099 -8.3327 -2.2321 18 6 -2.6410 -7.2733 -1.7268 19 6 -2.0034 -6.1044 -1.3557 20 9 -2.7179 -5.0719 -0.8570 21 6 1.1912 -4.7954 -0.2746 22 6 1.8260 -3.6471 0.0922 23 1 -0.4849 0.8401 0.0004 24 1 -0.1391 -1.4058 -1.5799 25 1 -1.2655 -3.4744 -2.2261 26 1 1.1847 -6.9867 -2.1261 27 1 -2.4123 -9.2453 -2.5168 28 1 -3.7120 -7.3610 -1.6178 29 1 1.5520 -5.7486 0.0829 30 1 2.6899 -3.6895 0.7389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241331229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -21.416143 kcal Electronic energy + Delta-G solvation = -17683.583680 eV Core-core repulsion = 14576.045246 eV Total energy + Delta-G solvation = -3107.538434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.39715 -38.94426 -37.44805 -36.25788 -34.02316 -31.71117 -30.21772 -29.51842 -28.77840 -25.41292 -22.83345 -22.25443 -20.81885 -20.24029 -17.48774 -17.32888 -16.30360 -16.12811 -15.43756 -15.12132 -14.53590 -14.09987 -13.71744 -13.46939 -13.10362 -12.99086 -12.74855 -12.39314 -12.12435 -11.90013 -11.43525 -11.34655 -11.18060 -11.00667 -10.93655 -10.61403 -10.47421 -9.82740 -9.55936 -9.41247 -8.79971 -8.32060 -7.66804 -7.32260 -6.95199 -4.50203 1.19578 1.31199 2.19766 2.61366 2.98218 3.02742 3.03860 3.06279 3.73809 3.79747 4.44205 4.57517 4.90478 5.05940 5.35518 5.45393 5.56781 5.94282 6.01511 6.16295 6.22338 6.30200 6.33492 6.50771 6.82540 6.89483 7.00822 7.12192 7.19183 7.48066 7.73692 7.90234 7.95661 8.11875 8.46687 8.69832 8.80745 9.97090 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.004138 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.892625 B = 6765.232907 C = 7394.160735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.121 3.879 10 C -0.172 4.172 11 C -0.064 4.064 12 C -0.219 4.219 13 C 0.000 4.000 14 C -0.095 4.095 15 C -0.040 4.040 16 Cl -0.080 7.080 17 C -0.114 4.114 18 C -0.141 4.141 19 C 0.090 3.910 20 F -0.129 7.129 21 C -0.057 4.057 22 C -0.231 4.231 23 H 0.284 0.716 24 H 0.119 0.881 25 H 0.088 0.912 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 -9.996 -3.724 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.118 3.882 10 C -0.191 4.191 11 C -0.083 4.083 12 C -0.220 4.220 13 C -0.001 4.001 14 C -0.114 4.114 15 C -0.067 4.067 16 Cl -0.051 7.051 17 C -0.133 4.133 18 C -0.160 4.160 19 C 0.071 3.929 20 F -0.108 7.108 21 C -0.075 4.075 22 C -0.250 4.250 23 H 0.096 0.904 24 H 0.137 0.863 25 H 0.106 0.894 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.109 0.891 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.625 -9.896 -3.737 10.899 hybrid contribution 0.155 0.795 0.105 0.817 sum -2.470 -9.101 -3.632 10.106 Atomic orbital electron populations 1.69832 1.07787 1.29726 1.32670 1.26040 0.94780 1.01748 0.92071 0.86207 0.81051 0.80467 0.78791 1.18162 1.19466 1.19758 1.19738 0.98390 0.91309 1.38127 0.89911 1.17733 0.90688 0.92124 0.87676 1.20970 0.99765 0.96841 1.01499 1.20400 0.97498 0.92050 0.98310 1.17790 1.02449 0.89880 1.11858 1.19021 0.90588 0.94755 0.95750 1.21109 1.00752 0.90702 0.98855 1.20808 0.92224 0.89977 1.03676 1.98344 1.74912 1.46323 1.85550 1.20678 0.91635 0.99205 1.01792 1.20920 1.00607 0.92317 1.02127 1.17984 0.89708 0.85388 0.99867 1.91516 1.77539 1.56922 1.84795 1.20267 0.94063 0.96777 0.96405 1.20651 1.04208 0.92802 1.07377 0.90447 0.86276 0.89356 0.84356 0.84853 0.84532 0.89118 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.31 10.96 55.55 0.61 -18.70 16 2 C 0.07 1.77 5.13 -17.33 -0.09 1.68 16 3 Si 0.91 17.73 29.60 -169.99 -5.03 12.69 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.36 9.03 -37.87 -0.34 -11.70 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.12 3.11 5.57 -106.80 -0.60 2.52 16 10 C -0.17 -4.36 8.63 -39.28 -0.34 -4.70 16 11 C -0.06 -1.50 8.79 -39.65 -0.35 -1.85 16 12 C -0.22 -4.80 5.34 -104.63 -0.56 -5.36 16 13 C 0.00 0.00 5.47 -104.82 -0.57 -0.57 16 14 C -0.10 -1.55 9.29 -39.16 -0.36 -1.91 16 15 C -0.04 -0.57 6.31 -39.55 -0.25 -0.82 16 16 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 17 C -0.11 -1.48 9.82 -39.45 -0.39 -1.86 16 18 C -0.14 -1.97 10.01 -39.57 -0.40 -2.37 16 19 C 0.09 1.59 7.16 -38.99 -0.28 1.31 16 20 F -0.13 -2.52 15.92 2.25 0.04 -2.49 16 21 C -0.06 -1.25 9.44 -39.66 -0.37 -1.62 16 22 C -0.23 -5.48 9.73 -39.28 -0.38 -5.87 16 23 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 24 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 25 H 0.09 1.95 7.80 -52.49 -0.41 1.54 16 26 H 0.14 2.16 8.04 -52.49 -0.42 1.74 16 27 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.09 1.75 8.04 -52.48 -0.42 1.33 16 30 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -25.94 286.89 -9.24 -35.18 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -2.39 Total: 4.61 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -5.28 Total: -33.12 kcal Atomic # 7 Polarization: -19.31 SS G_CDS: 0.61 Total: -18.70 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -25.94 -9.24 -35.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241331229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.765 kcal (2) G-P(sol) polarization free energy of solvation -25.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds