Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86803 * 120.00356 * 2 1 4 4 H 1.48495 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46672 * 300.00040 * 3 2 1 6 6 H 1.48498 * 109.47095 * 59.99694 * 3 2 1 7 7 C 1.40000 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99640 * 197.97099 * 7 2 1 9 9 C 1.41005 * 120.00004 * 17.96444 * 7 2 1 10 10 C 1.40943 * 120.11404 * 24.69038 * 9 7 2 11 11 C 1.36239 * 119.87855 * 180.02562 * 10 9 7 12 12 C 1.39968 * 120.11855 * 359.97393 * 11 10 9 13 13 C 1.47932 * 119.88080 * 179.74796 * 12 11 10 14 14 C 1.39608 * 120.15197 * 129.99963 * 13 12 11 15 15 C 1.38006 * 119.86735 * 179.97438 * 14 13 12 16 16 Cl 1.73594 * 119.91504 * 179.97438 * 15 14 13 17 17 C 1.38564 * 120.17416 * 0.02581 * 15 14 13 18 18 C 1.38279 * 120.31188 * 359.97396 * 17 15 14 19 19 C 1.38226 * 120.13323 * 359.74413 * 18 17 15 20 20 F 1.35103 * 120.09259 * 180.27430 * 19 18 17 21 21 C 1.39962 * 120.23425 * 0.02562 * 12 11 10 22 22 C 1.36240 * 120.11871 * 0.02562 * 21 12 11 23 23 H 0.97003 * 119.99516 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.05911 * 359.97438 * 10 9 7 25 25 H 1.07995 * 119.94057 * 179.97438 * 11 10 9 26 26 H 1.08002 * 120.07309 * 359.97438 * 14 13 12 27 27 H 1.08001 * 119.84099 * 179.97438 * 17 15 14 28 28 H 1.08004 * 119.93198 * 180.02562 * 18 17 15 29 29 H 1.08005 * 119.94088 * 179.97438 * 21 12 11 30 30 H 1.08000 * 120.05546 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7021 1.3463 -0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8834 2.3964 1.2124 7 6 2.0080 -1.2125 0.0005 8 1 3.0485 -1.2351 0.2891 9 6 1.3545 -2.4040 -0.3756 10 6 0.2269 -2.3559 -1.2197 11 6 -0.4012 -3.5101 -1.5797 12 6 0.0719 -4.7420 -1.1132 13 6 -0.6175 -5.9916 -1.5028 14 6 0.1135 -7.0657 -2.0136 15 6 -0.5355 -8.2289 -2.3748 16 17 0.3721 -9.5650 -3.0108 17 6 -1.9099 -8.3327 -2.2321 18 6 -2.6410 -7.2733 -1.7268 19 6 -2.0034 -6.1044 -1.3557 20 9 -2.7179 -5.0719 -0.8570 21 6 1.1912 -4.7954 -0.2746 22 6 1.8260 -3.6471 0.0922 23 1 -0.4849 0.8401 0.0004 24 1 -0.1391 -1.4058 -1.5799 25 1 -1.2655 -3.4744 -2.2261 26 1 1.1847 -6.9867 -2.1261 27 1 -2.4123 -9.2453 -2.5168 28 1 -3.7120 -7.3610 -1.6178 29 1 1.5520 -5.7486 0.0829 30 1 2.6899 -3.6895 0.7389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241331229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -31.745239 kcal Electronic energy + Delta-G solvation = -17684.031583 eV Core-core repulsion = 14576.045246 eV Total energy + Delta-G solvation = -3107.986337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.82278 -40.31688 -39.09466 -37.37389 -35.76558 -33.23071 -31.67939 -31.15883 -30.38287 -27.10913 -24.23355 -23.66534 -22.58032 -21.86933 -19.32300 -18.64717 -17.67646 -17.46818 -17.09945 -16.56708 -15.97602 -15.73735 -15.23386 -15.02860 -14.46495 -14.33457 -14.19157 -13.95012 -13.67555 -13.58538 -13.07643 -12.81671 -12.73764 -12.30096 -12.22925 -12.20100 -11.85218 -11.53549 -11.34094 -11.13587 -10.16340 -9.62962 -9.52286 -9.05580 -8.72570 -6.39191 -0.08705 0.08762 0.90781 1.10439 1.14922 1.37655 1.48905 1.53793 2.17174 2.43935 2.69954 3.30595 3.64491 3.76117 3.83374 4.12856 4.25702 4.37261 4.43414 4.69520 4.84236 4.96913 5.05453 5.09579 5.12967 5.17481 5.30721 5.36259 5.63953 5.69636 5.95743 6.03575 6.11253 6.27433 6.60292 6.83714 6.94588 8.23090 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.004138 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.892625 B = 6765.232907 C = 7394.160735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.487 4.487 8 H 0.083 0.917 9 C 0.089 3.911 10 C -0.194 4.194 11 C -0.074 4.074 12 C -0.207 4.207 13 C -0.033 4.033 14 C -0.093 4.093 15 C -0.041 4.041 16 Cl -0.059 7.059 17 C -0.091 4.091 18 C -0.128 4.128 19 C 0.069 3.931 20 F -0.148 7.148 21 C -0.061 4.061 22 C -0.244 4.244 23 H 0.292 0.708 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.140 0.860 27 H 0.173 0.827 28 H 0.170 0.830 29 H 0.119 0.881 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -12.406 -4.373 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.087 3.913 10 C -0.213 4.213 11 C -0.093 4.093 12 C -0.208 4.208 13 C -0.034 4.034 14 C -0.112 4.112 15 C -0.068 4.068 16 Cl -0.030 7.030 17 C -0.109 4.109 18 C -0.147 4.147 19 C 0.050 3.950 20 F -0.127 7.127 21 C -0.079 4.079 22 C -0.264 4.264 23 H 0.103 0.897 24 H 0.120 0.880 25 H 0.112 0.888 26 H 0.158 0.842 27 H 0.191 0.809 28 H 0.187 0.813 29 H 0.137 0.863 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.138 -12.334 -4.390 13.463 hybrid contribution 0.206 1.179 0.213 1.215 sum -2.933 -11.155 -4.177 12.267 Atomic orbital electron populations 1.69884 1.09301 1.31004 1.33763 1.26896 0.95464 1.04906 0.90958 0.85095 0.79512 0.75698 0.79063 1.17817 1.18811 1.18882 1.19960 0.98699 0.92427 1.40394 0.89899 1.18058 0.91393 0.93341 0.88535 1.20926 1.00760 0.96892 1.02733 1.20553 0.97676 0.92427 0.98608 1.18121 1.01796 0.90894 1.10020 1.18898 0.91401 0.94360 0.98777 1.21089 1.00835 0.90748 0.98528 1.20906 0.93041 0.89876 1.02945 1.98361 1.74625 1.44888 1.85115 1.21163 0.90995 0.99925 0.98831 1.21260 1.02268 0.90708 1.00421 1.18330 0.89401 0.86318 1.00935 1.91472 1.77819 1.58070 1.85303 1.20575 0.93969 0.97391 0.95990 1.20877 1.04864 0.92917 1.07710 0.89749 0.87998 0.88789 0.84187 0.80919 0.81296 0.86285 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.43 10.96 21.84 0.24 -42.19 16 2 C 0.03 1.70 5.13 85.27 0.44 2.14 16 3 Si 0.99 37.25 29.60 68.60 2.03 39.28 16 4 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.49 -25.91 9.03 23.38 0.21 -25.70 16 8 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 9 C 0.09 4.84 5.57 -21.28 -0.12 4.73 16 10 C -0.19 -10.43 8.63 22.47 0.19 -10.24 16 11 C -0.07 -3.62 8.79 22.22 0.20 -3.42 16 12 C -0.21 -9.20 5.34 -19.87 -0.11 -9.30 16 13 C -0.03 -1.21 5.47 -19.99 -0.11 -1.32 16 14 C -0.09 -2.83 9.29 22.55 0.21 -2.62 16 15 C -0.04 -1.01 6.31 22.29 0.14 -0.87 16 16 Cl -0.06 -1.25 28.95 -2.72 -0.08 -1.33 16 17 C -0.09 -1.90 9.82 22.36 0.22 -1.68 16 18 C -0.13 -3.09 10.01 22.28 0.22 -2.87 16 19 C 0.07 2.34 7.16 22.65 0.16 2.51 16 20 F -0.15 -5.75 15.92 44.97 0.72 -5.03 16 21 C -0.06 -2.70 9.44 22.22 0.21 -2.50 16 22 C -0.24 -11.97 9.73 22.47 0.22 -11.75 16 23 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 24 H 0.10 5.71 6.16 -2.91 -0.02 5.70 16 25 H 0.09 4.34 7.80 -2.91 -0.02 4.31 16 26 H 0.14 4.12 8.04 -2.91 -0.02 4.10 16 27 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 28 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.12 4.48 8.04 -2.91 -0.02 4.46 16 30 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -59.03 286.89 6.16 -52.87 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.17 Total: 19.29 kcal Atomic # 6 Polarization: -64.98 SS G_CDS: 2.09 Total: -62.89 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.24 Total: -42.19 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.72 Total: -5.03 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -59.03 6.16 -52.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241331229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.123 kcal (2) G-P(sol) polarization free energy of solvation -59.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds