Wall clock time and date at job start Mon Mar 30 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99445 * 2 1 4 4 H 1.48496 * 109.47319 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.47583 * 30.00444 * 3 2 1 6 6 H 1.48512 * 109.46733 * 150.00050 * 3 2 1 7 7 C 1.39917 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 197.79578 * 7 2 1 9 9 C 1.41323 * 119.99904 * 17.80176 * 7 2 1 10 10 C 1.40536 * 120.20926 * 24.59723 * 9 7 2 11 11 C 1.38661 * 119.65517 * 179.75174 * 10 9 7 12 12 C 1.48405 * 119.96450 * 180.25320 * 11 10 9 13 13 C 1.39361 * 120.11046 * 359.72739 * 12 11 10 14 14 C 1.38008 * 119.89855 * 179.70411 * 13 12 11 15 15 C 1.38319 * 120.13657 * 0.56837 * 14 13 12 16 16 C 1.38418 * 120.23000 * 359.72221 * 15 14 13 17 17 Cl 1.73598 * 119.95432 * 179.97438 * 16 15 14 18 18 C 1.38160 * 120.09452 * 359.97438 * 16 15 14 19 19 C 1.39811 * 120.07260 * 0.22672 * 11 10 9 20 20 C 1.38232 * 120.42391 * 0.02934 * 19 11 10 21 21 C 1.38068 * 120.34234 * 359.97438 * 20 19 11 22 22 F 1.35105 * 120.03879 * 180.02562 * 21 20 19 23 23 H 0.96993 * 120.00410 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.16832 * 0.02562 * 10 9 7 25 25 H 1.08000 * 120.04873 * 359.97438 * 13 12 11 26 26 H 1.08003 * 119.92732 * 180.29722 * 14 13 12 27 27 H 1.08001 * 119.88566 * 179.70551 * 15 14 13 28 28 H 1.08002 * 120.06776 * 179.97438 * 18 16 15 29 29 H 1.08004 * 119.79020 * 180.02562 * 19 11 10 30 30 H 1.08000 * 119.83074 * 179.97438 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4399 2.6527 0.7001 6 1 3.5401 1.4403 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0494 -1.2339 0.2864 9 6 1.3524 -2.4065 -0.3731 10 6 0.2246 -2.3619 -1.2105 11 6 -0.4070 -3.5416 -1.5741 12 6 -1.5950 -3.5030 -2.4625 13 6 -2.0808 -2.2824 -2.9277 14 6 -3.1822 -2.2520 -3.7587 15 6 -3.8116 -3.4292 -4.1209 16 6 -3.3374 -4.6442 -3.6572 17 17 -4.1333 -6.1173 -4.1158 18 6 -2.2317 -4.6862 -2.8299 19 6 0.0746 -4.7675 -1.1050 20 6 1.1805 -4.8146 -0.2769 21 6 1.8226 -3.6506 0.0960 22 9 2.9032 -3.7037 0.9052 23 1 -0.4850 0.8399 0.0004 24 1 -0.1456 -1.4140 -1.5725 25 1 -1.5933 -1.3620 -2.6419 26 1 -3.5561 -1.3066 -4.1234 27 1 -4.6761 -3.4003 -4.7676 28 1 -1.8624 -5.6344 -2.4680 29 1 -0.4206 -5.6836 -1.3914 30 1 1.5441 -5.7667 0.0802 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242147000.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:44 Heat of formation + Delta-G solvation = -32.871038 kcal Electronic energy + Delta-G solvation = -17812.570121 eV Core-core repulsion = 14704.534966 eV Total energy + Delta-G solvation = -3108.035155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.23623 -40.55442 -38.84332 -37.35688 -35.75650 -33.21556 -32.07273 -31.42632 -29.35107 -27.34056 -24.22959 -24.10726 -22.44908 -21.61298 -19.38419 -18.29032 -17.73686 -17.24793 -16.71504 -16.36390 -16.01081 -15.71877 -15.41744 -14.78032 -14.67259 -14.54368 -14.32802 -13.79074 -13.49742 -13.21963 -13.00130 -12.86885 -12.54451 -12.46950 -12.27794 -12.08066 -12.03747 -11.62857 -11.31084 -11.14644 -10.30030 -9.73169 -9.56630 -8.84866 -8.62591 -6.45768 -0.14288 0.28040 0.86090 1.06593 1.14503 1.37483 1.49482 1.50202 2.18026 2.50502 2.87545 3.54074 3.75862 3.86570 3.99967 4.16692 4.31776 4.34262 4.44746 4.60446 4.68333 4.93075 4.98331 5.11559 5.20790 5.22823 5.37956 5.51367 5.57341 5.66922 5.87680 5.96056 6.01347 6.14064 6.49514 6.73331 6.81642 8.22477 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.005220 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.988409 B = 5362.716541 C = 6607.734748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.043 3.957 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.493 4.493 8 H 0.070 0.930 9 C 0.054 3.946 10 C -0.142 4.142 11 C -0.056 4.056 12 C -0.028 4.028 13 C -0.122 4.122 14 C -0.099 4.099 15 C -0.116 4.116 16 C -0.038 4.038 17 Cl -0.067 7.067 18 C -0.115 4.115 19 C -0.199 4.199 20 C -0.119 4.119 21 C -0.061 4.061 22 F -0.170 7.170 23 H 0.295 0.705 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.160 0.840 27 H 0.159 0.841 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 -2.844 -8.051 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.174 4.174 3 Si 0.803 3.197 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.522 4.522 8 H 0.088 0.912 9 C 0.051 3.949 10 C -0.161 4.161 11 C -0.056 4.056 12 C -0.028 4.028 13 C -0.140 4.140 14 C -0.117 4.117 15 C -0.134 4.134 16 C -0.064 4.064 17 Cl -0.039 7.039 18 C -0.134 4.134 19 C -0.218 4.218 20 C -0.138 4.138 21 C -0.081 4.081 22 F -0.149 7.149 23 H 0.106 0.894 24 H 0.146 0.854 25 H 0.139 0.861 26 H 0.178 0.822 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.452 -2.831 -8.040 12.004 hybrid contribution 0.839 0.448 0.597 1.123 sum -7.613 -2.384 -7.443 10.910 Atomic orbital electron populations 1.69819 1.08659 1.31179 1.34032 1.26668 0.95592 1.04175 0.90937 0.85192 0.78922 0.75711 0.79902 1.18027 1.18604 1.18956 1.19676 0.98304 0.92449 1.41731 0.91184 1.17925 0.93547 0.91711 0.91693 1.21344 0.97787 0.97364 0.99629 1.18783 0.95058 0.93781 0.98008 1.18905 0.94283 0.93505 0.96141 1.21570 0.97317 0.97502 0.97589 1.21323 0.94447 0.99281 0.96635 1.21343 1.01259 0.89985 1.00862 1.20883 0.96264 0.88245 1.01029 1.98348 1.79253 1.34882 1.91369 1.21171 0.95151 0.98690 0.98351 1.20652 0.99530 0.96868 1.04723 1.20754 0.97089 0.96049 0.99908 1.18318 0.91820 0.95804 1.02147 1.91238 1.54121 1.97374 1.72211 0.89424 0.85419 0.86059 0.82210 0.82357 0.84299 0.84673 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.95 10.96 21.82 0.24 -39.71 16 2 C 0.04 2.10 5.14 85.24 0.44 2.53 16 3 Si 0.98 37.10 29.59 68.60 2.03 39.13 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 6 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.49 -26.79 8.77 23.44 0.21 -26.59 16 8 H 0.07 3.85 7.73 -2.91 -0.02 3.82 16 9 C 0.05 2.94 5.58 -21.28 -0.12 2.82 16 10 C -0.14 -7.09 8.06 22.93 0.18 -6.90 16 11 C -0.06 -2.45 5.87 -20.09 -0.12 -2.57 16 12 C -0.03 -1.03 5.88 -20.04 -0.12 -1.15 16 13 C -0.12 -4.08 9.42 22.49 0.21 -3.87 16 14 C -0.10 -2.51 10.03 22.23 0.22 -2.29 16 15 C -0.12 -2.73 9.82 22.33 0.22 -2.51 16 16 C -0.04 -1.01 6.31 22.29 0.14 -0.87 16 17 Cl -0.07 -1.55 28.95 -2.72 -0.08 -1.63 16 18 C -0.12 -3.61 9.21 22.51 0.21 -3.40 16 19 C -0.20 -8.19 9.43 22.65 0.21 -7.97 16 20 C -0.12 -5.25 9.99 22.23 0.22 -5.03 16 21 C -0.06 -3.14 7.31 22.91 0.17 -2.97 16 22 F -0.17 -8.83 16.70 44.97 0.75 -8.08 16 23 H 0.29 12.88 8.30 -92.71 -0.77 12.11 16 24 H 0.13 6.38 4.29 -2.91 -0.01 6.37 16 25 H 0.12 4.39 6.19 -2.91 -0.02 4.37 16 26 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 27 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.14 4.06 6.19 -2.91 -0.02 4.05 16 29 H 0.14 4.59 6.18 -2.91 -0.02 4.57 16 30 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -57.87 281.40 6.21 -51.65 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.19 Total: 19.39 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 2.08 Total: -60.76 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.24 Total: -39.71 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.75 Total: -8.08 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -57.87 6.21 -51.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242147000.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.782 kcal (2) G-P(sol) polarization free energy of solvation -57.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds