Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86796 * 119.99970 * 2 1 4 4 H 1.48492 * 109.47461 * 239.99460 * 3 2 1 5 5 H 1.48502 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46798 * 119.99967 * 3 2 1 7 7 C 1.39931 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99999 * 197.78347 * 7 2 1 9 9 C 1.41317 * 120.00031 * 17.79509 * 7 2 1 10 10 C 1.40772 * 120.20998 * 24.65664 * 9 7 2 11 11 C 1.37619 * 120.01840 * 179.97438 * 10 9 7 12 12 C 1.38502 * 120.45755 * 359.97438 * 11 10 9 13 13 C 1.39548 * 120.42123 * 359.97438 * 12 11 10 14 14 C 1.48379 * 120.02101 * 179.97438 * 13 12 11 15 15 C 1.39369 * 120.11134 * 310.00012 * 14 13 12 16 16 C 1.38008 * 119.89944 * 179.97438 * 15 14 13 17 17 C 1.38326 * 120.13897 * 0.02562 * 16 15 14 18 18 C 1.38414 * 120.22535 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.94638 * 180.02562 * 18 17 16 20 20 C 1.38158 * 120.09812 * 359.78953 * 18 17 16 21 21 C 1.39109 * 119.96359 * 0.02562 * 13 12 11 22 22 F 1.35097 * 120.21999 * 179.97438 * 21 13 12 23 23 H 0.97003 * 120.00098 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99350 * 359.97438 * 10 9 7 25 25 H 1.08011 * 119.77022 * 180.28081 * 11 10 9 26 26 H 1.07997 * 119.79057 * 180.02562 * 12 11 10 27 27 H 1.07990 * 120.04834 * 359.95440 * 15 14 13 28 28 H 1.08004 * 119.92997 * 180.02562 * 16 15 14 29 29 H 1.07992 * 119.88296 * 180.02562 * 17 16 15 30 30 H 1.08004 * 120.06689 * 180.24980 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6964 -1.2123 5 1 1.2775 2.7465 0.0006 6 1 3.0962 1.6963 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0494 -1.2341 0.2862 9 6 1.3522 -2.4066 -0.3729 10 6 0.2231 -2.3621 -1.2126 11 6 -0.4123 -3.5280 -1.5743 12 6 0.0512 -4.7508 -1.1181 13 6 1.1694 -4.8168 -0.2858 14 6 1.6580 -6.1315 0.1983 15 6 0.7713 -7.0362 0.7794 16 6 1.2304 -8.2581 1.2276 17 6 2.5683 -8.5860 1.1017 18 6 3.4537 -7.6917 0.5255 19 17 5.1312 -8.1110 0.3706 20 6 3.0036 -6.4678 0.0691 21 6 1.8251 -3.6491 0.0908 22 9 2.9078 -3.7069 0.8967 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1445 -1.4127 -1.5731 25 1 -1.2755 -3.4895 -2.2224 26 1 -0.4554 -5.6591 -1.4089 27 1 -0.2734 -6.7814 0.8790 28 1 0.5436 -8.9597 1.6776 29 1 2.9230 -9.5435 1.4535 30 1 3.6941 -5.7720 -0.3841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242147487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -22.668927 kcal Electronic energy + Delta-G solvation = -17905.443328 eV Core-core repulsion = 14797.850570 eV Total energy + Delta-G solvation = -3107.592759 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.33896 -39.08653 -37.25200 -36.23343 -33.99866 -31.73080 -30.54242 -29.69829 -28.00210 -25.44999 -22.90113 -22.42132 -20.74381 -20.37467 -17.68060 -16.51043 -16.05543 -15.51366 -15.32799 -15.02904 -14.46404 -14.10749 -14.03773 -13.44836 -13.20051 -12.95804 -12.87640 -11.96344 -11.85235 -11.51334 -11.46499 -11.43130 -11.11544 -11.04350 -10.84102 -10.73138 -10.53520 -9.94092 -9.68764 -9.32884 -8.78004 -8.52994 -7.59686 -7.32638 -6.92137 -4.52267 1.31843 1.47455 2.27793 2.58504 2.65467 3.00053 3.02972 3.10058 3.83153 3.92198 4.42833 4.99791 5.04481 5.29795 5.36864 5.50234 5.63648 5.76700 5.90400 6.10037 6.15589 6.42282 6.45066 6.51386 6.70664 6.75413 6.96445 7.05477 7.07485 7.36781 7.46756 7.78623 7.84970 7.95634 8.40159 8.61936 8.70021 10.00992 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.004924 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.285242 B = 5685.351993 C = 6474.585089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.140 4.140 11 C -0.111 4.111 12 C -0.199 4.199 13 C -0.071 4.071 14 C -0.001 4.001 15 C -0.107 4.107 16 C -0.111 4.111 17 C -0.126 4.126 18 C -0.032 4.032 19 Cl -0.083 7.083 20 C -0.096 4.096 21 C -0.008 4.008 22 F -0.157 7.157 23 H 0.285 0.715 24 H 0.127 0.873 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -9.653 0.029 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.159 4.159 11 C -0.130 4.130 12 C -0.219 4.219 13 C -0.072 4.072 14 C -0.001 4.001 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.145 4.145 18 C -0.059 4.059 19 Cl -0.054 7.054 20 C -0.115 4.115 21 C -0.029 4.029 22 F -0.136 7.136 23 H 0.096 0.904 24 H 0.145 0.855 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.393 -9.520 0.067 9.621 hybrid contribution 0.616 0.728 0.203 0.975 sum 2.009 -8.791 0.270 9.022 Atomic orbital electron populations 1.69798 1.07648 1.29820 1.33990 1.25916 0.94780 1.01540 0.91960 0.86263 0.80130 0.79590 0.80270 1.18591 1.20138 1.18780 1.19496 0.98451 0.90897 1.39307 0.89845 1.17554 0.92722 0.90642 0.90909 1.21270 0.97927 0.97460 0.99247 1.20660 0.99202 0.92782 1.00349 1.20220 0.98997 0.96840 1.05839 1.18230 0.98066 0.89131 1.01791 1.18884 0.92001 0.93694 0.95553 1.21372 1.00099 0.93225 0.97838 1.20976 0.94773 0.96898 1.00274 1.20938 0.93097 0.99287 1.01198 1.20789 0.84926 0.96245 1.03914 1.98342 1.16818 1.93442 1.96775 1.21193 0.95846 0.94772 0.99667 1.17809 0.90596 0.93745 1.00727 1.91287 1.53178 1.97180 1.71909 0.90433 0.85527 0.88393 0.88234 0.85267 0.85391 0.85523 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.43 10.96 55.55 0.61 -18.82 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.85 8.78 -37.78 -0.33 -12.18 16 8 H 0.08 2.17 7.73 -52.48 -0.41 1.76 16 9 C 0.08 2.21 5.57 -106.80 -0.60 1.62 16 10 C -0.14 -3.41 8.69 -38.85 -0.34 -3.75 16 11 C -0.11 -2.41 10.01 -39.71 -0.40 -2.81 16 12 C -0.20 -4.15 9.51 -39.00 -0.37 -4.52 16 13 C -0.07 -1.56 5.47 -104.91 -0.57 -2.14 16 14 C 0.00 -0.02 5.31 -104.91 -0.56 -0.57 16 15 C -0.11 -1.72 9.50 -39.24 -0.37 -2.09 16 16 C -0.11 -1.49 10.03 -39.63 -0.40 -1.88 16 17 C -0.13 -1.73 9.82 -39.48 -0.39 -2.11 16 18 C -0.03 -0.51 6.31 -39.55 -0.25 -0.76 16 19 Cl -0.08 -1.16 28.95 -51.86 -1.50 -2.67 16 20 C -0.10 -1.74 8.64 -39.22 -0.34 -2.08 16 21 C -0.01 -0.21 7.16 -38.29 -0.27 -0.48 16 22 F -0.16 -3.89 15.35 2.25 0.03 -3.86 16 23 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 24 H 0.13 3.15 6.16 -52.48 -0.32 2.83 16 25 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 26 H 0.10 1.81 8.03 -52.49 -0.42 1.39 16 27 H 0.13 1.91 8.04 -52.49 -0.42 1.49 16 28 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 2.50 7.80 -52.48 -0.41 2.09 16 LS Contribution 286.35 15.07 4.32 4.32 Total: -1.00 -26.29 286.35 -9.23 -35.52 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -2.38 Total: 4.34 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -5.27 Total: -31.98 kcal Atomic # 7 Polarization: -19.43 SS G_CDS: 0.61 Total: -18.82 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.03 Total: -3.86 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.29 -9.23 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242147487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.851 kcal (2) G-P(sol) polarization free energy of solvation -26.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds