Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48500 * 109.47088 * 90.00434 * 3 2 1 5 5 H 1.48505 * 109.47152 * 209.99911 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99911 * 3 2 1 7 7 C 1.40136 * 120.00441 * 180.27363 * 2 1 3 8 8 H 1.07992 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.41073 * 119.99446 * 0.02562 * 7 2 1 10 10 N 1.33650 * 119.13239 * 359.72797 * 9 7 2 11 11 C 1.31585 * 120.82925 * 179.71445 * 10 9 7 12 12 C 1.40446 * 119.08964 * 0.55027 * 11 10 9 13 13 C 1.47900 * 120.78963 * 179.70383 * 12 11 10 14 14 C 1.39721 * 120.10999 * 179.74444 * 13 12 11 15 15 C 1.37905 * 119.97204 * 179.76864 * 14 13 12 16 16 C 1.38457 * 120.18782 * 0.51237 * 15 14 13 17 17 Cl 1.73605 * 119.88959 * 179.72271 * 16 15 14 18 18 C 1.39016 * 120.22352 * 359.73753 * 16 15 14 19 19 O 1.35925 * 119.98908 * 180.02562 * 18 16 15 20 20 C 1.38377 * 120.02416 * 0.02562 * 18 16 15 21 21 C 1.40445 * 118.41593 * 359.72404 * 12 11 10 22 22 N 1.31579 * 119.09575 * 0.02562 * 21 12 11 23 23 H 0.97005 * 120.00023 * 359.72375 * 1 2 3 24 24 H 1.07995 * 120.45072 * 180.27369 * 11 10 9 25 25 H 1.08007 * 120.01623 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.90970 * 180.25371 * 15 14 13 27 27 H 0.96697 * 113.99535 * 269.98268 * 19 18 16 28 28 H 1.07994 * 120.09112 * 180.02562 * 20 18 16 29 29 H 1.08006 * 120.44882 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0464 1.4001 5 1 3.5382 1.4403 -0.7000 6 1 1.4380 2.6527 -0.7000 7 6 2.0074 -1.2135 -0.0058 8 1 3.0873 -1.2135 -0.0062 9 6 1.3020 -2.4352 -0.0122 10 7 -0.0343 -2.4150 -0.0071 11 6 -0.7257 -3.5345 -0.0184 12 6 -0.0403 -4.7603 -0.0242 13 6 -0.7798 -6.0412 -0.0304 14 6 -0.0836 -7.2525 -0.0415 15 6 -0.7759 -8.4451 -0.0424 16 6 -2.1605 -8.4464 -0.0430 17 17 -3.0243 -9.9523 -0.0513 18 6 -2.8613 -7.2458 -0.0371 19 8 -4.2206 -7.2526 -0.0371 20 6 -2.1757 -6.0439 -0.0312 21 6 1.3640 -4.7409 -0.0237 22 7 1.9878 -3.5824 -0.0172 23 1 -0.4850 0.8401 0.0041 24 1 -1.8054 -3.5110 -0.0186 25 1 0.9965 -7.2548 -0.0453 26 1 -0.2367 -9.3809 -0.0469 27 1 -4.6138 -7.2500 -0.9205 28 1 -2.7191 -5.1106 -0.0263 29 1 1.9242 -5.6643 -0.0285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243578123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = -3.665753 kcal Electronic energy + Delta-G solvation = -17578.607404 eV Core-core repulsion = 14491.758646 eV Total energy + Delta-G solvation = -3086.848757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.17919 -40.28448 -37.73609 -37.36794 -35.81205 -33.96749 -33.35458 -31.16818 -30.31940 -27.82347 -25.17898 -24.50757 -23.01599 -22.37040 -19.92545 -19.26104 -18.08500 -17.80361 -17.06296 -16.52368 -16.34537 -16.10686 -15.33564 -15.04160 -14.79702 -14.48170 -14.09742 -13.85624 -13.46931 -13.16087 -13.00272 -12.75963 -12.63100 -12.51917 -12.16648 -11.95718 -11.55125 -11.39363 -11.22051 -11.04313 -10.45751 -9.78264 -9.34704 -9.00777 -8.54222 -6.78000 -0.23472 0.28624 0.90698 1.05056 1.21951 1.39380 1.51178 1.56233 2.15866 2.52802 2.84484 3.17884 3.80027 3.84697 3.87205 3.99273 4.05393 4.29373 4.33208 4.42160 4.65032 4.78603 4.97538 5.08120 5.17987 5.21248 5.27453 5.65357 5.74901 5.80802 6.05153 6.41306 6.49429 6.76239 7.08737 8.11088 8.24544 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.049220 B = 0.003629 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.733387 B = 7714.750414 C = 8271.091801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.018 3.982 3 Si 1.003 2.997 4 H -0.259 1.259 5 H -0.254 1.254 6 H -0.261 1.261 7 C -0.409 4.409 8 H 0.096 0.904 9 C 0.350 3.650 10 N -0.541 5.541 11 C 0.166 3.834 12 C -0.322 4.322 13 C 0.037 3.963 14 C -0.139 4.139 15 C -0.076 4.076 16 C -0.101 4.101 17 Cl -0.065 7.065 18 C 0.128 3.872 19 O -0.497 6.497 20 C -0.166 4.166 21 C 0.181 3.819 22 N -0.618 5.618 23 H 0.289 0.711 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.159 0.841 27 H 0.409 0.591 28 H 0.133 0.867 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 -10.741 -1.837 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.207 4.207 3 Si 0.821 3.179 4 H -0.183 1.183 5 H -0.177 1.177 6 H -0.185 1.185 7 C -0.443 4.443 8 H 0.114 0.886 9 C 0.117 3.883 10 N -0.258 5.258 11 C -0.010 4.010 12 C -0.332 4.332 13 C 0.034 3.966 14 C -0.158 4.158 15 C -0.095 4.095 16 C -0.128 4.128 17 Cl -0.036 7.036 18 C 0.083 3.917 19 O -0.310 6.310 20 C -0.185 4.185 21 C 0.007 3.993 22 N -0.337 5.337 23 H 0.100 0.900 24 H 0.168 0.832 25 H 0.165 0.835 26 H 0.177 0.823 27 H 0.268 0.732 28 H 0.151 0.849 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.975 -9.706 -1.234 10.560 hybrid contribution -0.578 -0.270 -0.461 0.787 sum -4.553 -9.976 -1.695 11.096 Atomic orbital electron populations 1.70171 1.09102 1.30381 1.25551 1.27206 0.95975 1.04978 0.92525 0.84891 0.78856 0.74248 0.79871 1.18303 1.17725 1.18500 1.19868 0.95422 0.88942 1.40026 0.88550 1.20377 0.86625 0.91932 0.89388 1.69326 1.08214 1.28417 1.19794 1.23524 1.00141 0.88195 0.89125 1.19905 0.95306 0.93728 1.24212 1.18584 0.92085 0.92015 0.93869 1.21331 1.01088 0.90332 1.03021 1.21058 0.91100 0.99517 0.97806 1.21427 0.93227 0.86486 1.11697 1.98333 1.77188 1.30907 1.97156 1.18000 0.83560 0.90320 0.99845 1.84779 1.14782 1.96237 1.35215 1.21420 0.93738 0.97717 1.05667 1.23345 0.91215 0.96288 0.88427 1.68685 1.41330 0.99145 1.24539 0.89950 0.83168 0.83489 0.82315 0.73235 0.84949 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.20 11.40 21.85 0.25 -36.95 15 2 C 0.02 0.89 5.50 85.33 0.47 1.36 15 3 Si 1.00 35.68 29.56 68.60 2.03 37.71 15 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 5 H -0.25 -8.78 7.11 99.48 0.71 -8.07 15 6 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 7 C -0.41 -21.93 9.35 23.43 0.22 -21.71 15 8 H 0.10 4.94 7.85 -2.91 -0.02 4.92 15 9 C 0.35 19.48 7.35 134.90 0.99 20.47 15 10 N -0.54 -29.43 7.83 -193.17 -1.51 -30.95 15 11 C 0.17 7.68 10.70 85.27 0.91 8.59 15 12 C -0.32 -13.31 5.94 -19.64 -0.12 -13.42 15 13 C 0.04 1.22 5.88 -20.03 -0.12 1.10 15 14 C -0.14 -3.81 9.45 22.55 0.21 -3.60 15 15 C -0.08 -1.82 9.81 22.24 0.22 -1.60 15 16 C -0.10 -2.59 6.34 22.51 0.14 -2.45 15 17 Cl -0.06 -1.46 28.49 -2.72 -0.08 -1.54 15 18 C 0.13 3.53 6.69 22.49 0.15 3.68 15 19 O -0.50 -11.95 12.95 -92.71 -1.20 -13.16 15 20 C -0.17 -5.16 9.39 22.63 0.21 -4.95 15 21 C 0.18 7.74 10.70 85.27 0.91 8.66 15 22 N -0.62 -31.76 10.34 -193.17 -2.00 -33.76 15 23 H 0.29 13.01 8.29 -92.70 -0.77 12.24 15 24 H 0.15 6.10 6.33 -2.91 -0.02 6.08 15 25 H 0.15 3.47 6.28 -2.91 -0.02 3.45 15 26 H 0.16 2.85 8.06 -2.91 -0.02 2.83 15 27 H 0.41 5.99 9.06 -74.06 -0.67 5.32 15 28 H 0.13 4.06 6.29 -2.91 -0.02 4.04 15 29 H 0.17 5.74 6.33 -2.91 -0.02 5.72 15 Total: -1.00 -64.37 277.46 2.26 -62.11 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.56 Total: 20.39 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 4.21 Total: -3.87 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -3.26 Total: -101.65 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.20 Total: -13.16 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -64.37 2.26 -62.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243578123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.448 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds