Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30701 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.46815 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46729 * 120.00090 * 3 2 1 6 6 H 1.48498 * 109.47153 * 240.00373 * 3 2 1 7 7 C 1.40159 * 119.99905 * 180.27849 * 2 1 3 8 8 H 1.07996 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.40725 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.34088 * 120.57931 * 351.81322 * 9 7 2 11 11 C 1.31523 * 119.85831 * 179.97438 * 10 9 7 12 12 C 1.39025 * 121.14323 * 359.97438 * 11 10 9 13 13 N 1.31898 * 121.23092 * 359.97438 * 12 11 10 14 14 C 1.33060 * 120.02857 * 359.75474 * 13 12 11 15 15 C 1.47560 * 120.55369 * 180.26478 * 14 13 12 16 16 C 1.39775 * 120.17648 * 129.76689 * 15 14 13 17 17 C 1.37768 * 119.90650 * 179.69693 * 16 15 14 18 18 C 1.38708 * 120.28253 * 0.58015 * 17 16 15 19 19 Cl 1.73593 * 119.81742 * 179.73603 * 18 17 16 20 20 C 1.38295 * 120.36659 * 359.71874 * 18 17 16 21 21 C 1.38546 * 120.08227 * 359.97438 * 20 18 17 22 22 O 1.35726 * 120.14027 * 180.02562 * 21 20 18 23 23 H 0.96994 * 119.99906 * 359.72177 * 1 2 3 24 24 H 1.07999 * 119.42610 * 180.02562 * 11 10 9 25 25 H 1.08001 * 119.38451 * 179.97438 * 12 11 10 26 26 H 1.08000 * 120.04702 * 359.97438 * 16 15 14 27 27 H 1.07997 * 119.85944 * 180.27514 * 17 16 15 28 28 H 1.08000 * 119.96132 * 180.02562 * 20 18 17 29 29 H 0.96708 * 114.00034 * 270.01823 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 1.2760 2.7464 0.0006 5 1 3.0947 1.6963 1.2125 6 1 3.0947 1.6964 -1.2125 7 6 2.0078 -1.2138 -0.0059 8 1 3.0877 -1.2138 -0.0055 9 6 1.3041 -2.4325 -0.0124 10 7 -0.0266 -2.4527 0.1514 11 6 -0.6701 -3.5997 0.1425 12 6 0.0055 -4.8018 -0.0352 13 7 1.3136 -4.8330 -0.2012 14 6 2.0115 -3.7002 -0.2056 15 6 3.4746 -3.7212 -0.3962 16 6 4.0710 -2.8911 -1.3496 17 6 5.4381 -2.9108 -1.5185 18 6 6.2252 -3.7599 -0.7547 19 17 7.9460 -3.7797 -0.9823 20 6 5.6466 -4.5906 0.1876 21 6 4.2738 -4.5786 0.3745 22 8 3.7048 -5.3930 1.2992 23 1 -0.4850 0.8400 0.0041 24 1 -1.7419 -3.6078 0.2746 25 1 -0.5513 -5.7272 -0.0373 26 1 3.4613 -2.2320 -1.9498 27 1 5.8985 -2.2658 -2.2523 28 1 6.2657 -5.2488 0.7790 29 1 3.4515 -6.2610 0.9563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244468713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = 10.097157 kcal Electronic energy + Delta-G solvation = -18331.390028 eV Core-core repulsion = 15245.138075 eV Total energy + Delta-G solvation = -3086.251953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53725 -38.33195 -36.66749 -35.68716 -34.24538 -32.46303 -31.34681 -29.67792 -28.52364 -26.22618 -23.40677 -22.43213 -21.77849 -20.77892 -17.96991 -17.74508 -16.33117 -16.14406 -15.41876 -15.32448 -14.81113 -14.36625 -14.11078 -13.52428 -13.05256 -12.85529 -12.73833 -12.39978 -11.90868 -11.63324 -11.46736 -11.38386 -11.11454 -10.72469 -10.69854 -10.41629 -10.11911 -9.94355 -9.70745 -9.27372 -8.48977 -8.32589 -7.66106 -7.43570 -6.70048 -4.84990 1.37465 1.64511 2.36823 2.39694 2.87802 2.92247 2.94626 3.12238 3.70179 3.97514 4.47913 4.72990 5.20115 5.25436 5.38585 5.59085 5.84332 5.86981 6.01629 6.14056 6.24308 6.30588 6.48001 6.56488 6.77148 6.81312 6.93053 7.01398 7.18340 7.54879 7.86706 8.16090 8.20831 8.48631 9.09773 9.69159 9.90717 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.007374 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.406270 B = 3796.041349 C = 5335.320700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.064 3.936 3 Si 0.912 3.088 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.097 0.903 9 C 0.226 3.774 10 N -0.459 5.459 11 C 0.094 3.906 12 C -0.125 4.125 13 N -0.406 5.406 14 C -0.034 4.034 15 C 0.015 3.985 16 C -0.079 4.079 17 C -0.121 4.121 18 C -0.038 4.038 19 Cl -0.088 7.088 20 C -0.142 4.142 21 C 0.123 3.877 22 O -0.484 6.484 23 H 0.282 0.718 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -2.776 -2.179 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.165 4.165 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.422 4.422 8 H 0.115 0.885 9 C 0.100 3.900 10 N -0.176 5.176 11 C -0.076 4.076 12 C -0.285 4.285 13 N -0.117 5.117 14 C -0.183 4.183 15 C 0.013 3.987 16 C -0.099 4.099 17 C -0.140 4.140 18 C -0.065 4.065 19 Cl -0.059 7.059 20 C -0.161 4.161 21 C 0.077 3.923 22 O -0.293 6.293 23 H 0.094 0.906 24 H 0.146 0.854 25 H 0.144 0.856 26 H 0.159 0.841 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 7.262 -2.143 -1.807 7.784 hybrid contribution 0.213 0.219 -0.189 0.359 sum 7.475 -1.924 -1.996 7.973 Atomic orbital electron populations 1.70033 1.07549 1.29174 1.25076 1.26248 0.95051 1.01743 0.93458 0.86266 0.80208 0.79409 0.80627 1.19782 1.18350 1.18228 1.19746 0.95192 0.88963 1.38327 0.88473 1.20320 0.88744 0.91577 0.89319 1.69563 1.07458 1.24424 1.16106 1.23405 0.99922 0.90358 0.93954 1.22344 0.91092 0.97755 1.17338 1.67625 1.07851 1.29569 1.06688 1.20959 0.91367 0.90462 1.15497 1.18834 0.91856 0.94995 0.92986 1.21240 0.93357 0.98256 0.97034 1.20882 0.93378 0.99317 1.00446 1.20596 0.83641 1.01437 1.00782 1.98326 1.12913 1.98073 1.96613 1.21058 0.94532 1.01372 0.99161 1.18395 0.89098 0.94472 0.90376 1.84713 1.80829 1.29056 1.34749 0.90637 0.85383 0.85606 0.84069 0.85218 0.85137 0.75576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.19 11.54 55.56 0.64 -16.55 15 2 C 0.06 1.49 5.50 -17.31 -0.10 1.39 15 3 Si 0.91 17.15 29.56 -169.99 -5.03 12.12 15 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 6 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 7 C -0.39 -9.67 7.91 -37.92 -0.30 -9.97 15 8 H 0.10 2.25 5.84 -52.49 -0.31 1.94 15 9 C 0.23 5.87 6.67 -82.64 -0.55 5.32 15 10 N -0.46 -12.08 8.12 -9.55 -0.08 -12.16 15 11 C 0.09 2.18 11.17 -17.39 -0.19 1.98 15 12 C -0.12 -2.78 11.17 -17.23 -0.19 -2.97 15 13 N -0.41 -9.48 9.89 -7.86 -0.08 -9.55 15 14 C -0.03 -0.82 6.18 -80.23 -0.50 -1.32 15 15 C 0.02 0.32 5.18 -104.75 -0.54 -0.22 15 16 C -0.08 -1.48 7.75 -39.18 -0.30 -1.78 15 17 C -0.12 -1.94 9.80 -39.58 -0.39 -2.33 15 18 C -0.04 -0.59 6.32 -39.39 -0.25 -0.84 15 19 Cl -0.09 -1.19 28.94 -51.86 -1.50 -2.69 15 20 C -0.14 -2.33 9.75 -39.45 -0.38 -2.71 15 21 C 0.12 2.34 6.70 -38.70 -0.26 2.08 15 22 O -0.48 -9.05 12.53 -18.88 -0.24 -9.29 15 23 H 0.28 6.24 8.29 -40.82 -0.34 5.90 15 24 H 0.13 2.53 8.06 -52.49 -0.42 2.11 15 25 H 0.13 2.39 8.06 -52.49 -0.42 1.96 15 26 H 0.14 2.64 7.41 -52.49 -0.39 2.25 15 27 H 0.13 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.13 1.88 8.06 -52.49 -0.42 1.45 15 29 H 0.39 5.83 9.06 45.56 0.41 6.24 15 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -28.36 278.86 -7.14 -35.50 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -1.11 Total: 9.80 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.96 Total: -11.38 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.49 Total: -38.27 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.24 Total: -9.29 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.36 -7.14 -35.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244468713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.594 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds