Wall clock time and date at job start Mon Mar 30 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30701 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.46815 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46729 * 120.00090 * 3 2 1 6 6 H 1.48498 * 109.47153 * 240.00373 * 3 2 1 7 7 C 1.40159 * 119.99905 * 180.27849 * 2 1 3 8 8 H 1.07996 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.40725 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.34088 * 120.57931 * 351.81322 * 9 7 2 11 11 C 1.31523 * 119.85831 * 179.97438 * 10 9 7 12 12 C 1.39025 * 121.14323 * 359.97438 * 11 10 9 13 13 N 1.31898 * 121.23092 * 359.97438 * 12 11 10 14 14 C 1.33060 * 120.02857 * 359.75474 * 13 12 11 15 15 C 1.47560 * 120.55369 * 180.26478 * 14 13 12 16 16 C 1.39775 * 120.17648 * 129.76689 * 15 14 13 17 17 C 1.37768 * 119.90650 * 179.69693 * 16 15 14 18 18 C 1.38708 * 120.28253 * 0.58015 * 17 16 15 19 19 Cl 1.73593 * 119.81742 * 179.73603 * 18 17 16 20 20 C 1.38295 * 120.36659 * 359.71874 * 18 17 16 21 21 C 1.38546 * 120.08227 * 359.97438 * 20 18 17 22 22 O 1.35726 * 120.14027 * 180.02562 * 21 20 18 23 23 H 0.96994 * 119.99906 * 359.72177 * 1 2 3 24 24 H 1.07999 * 119.42610 * 180.02562 * 11 10 9 25 25 H 1.08001 * 119.38451 * 179.97438 * 12 11 10 26 26 H 1.08000 * 120.04702 * 359.97438 * 16 15 14 27 27 H 1.07997 * 119.85944 * 180.27514 * 17 16 15 28 28 H 1.08000 * 119.96132 * 180.02562 * 20 18 17 29 29 H 0.96708 * 114.00034 * 270.01823 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 1.2760 2.7464 0.0006 5 1 3.0947 1.6963 1.2125 6 1 3.0947 1.6964 -1.2125 7 6 2.0078 -1.2138 -0.0059 8 1 3.0877 -1.2138 -0.0055 9 6 1.3041 -2.4325 -0.0124 10 7 -0.0266 -2.4527 0.1514 11 6 -0.6701 -3.5997 0.1425 12 6 0.0055 -4.8018 -0.0352 13 7 1.3136 -4.8330 -0.2012 14 6 2.0115 -3.7002 -0.2056 15 6 3.4746 -3.7212 -0.3962 16 6 4.0710 -2.8911 -1.3496 17 6 5.4381 -2.9108 -1.5185 18 6 6.2252 -3.7599 -0.7547 19 17 7.9460 -3.7797 -0.9823 20 6 5.6466 -4.5906 0.1876 21 6 4.2738 -4.5786 0.3745 22 8 3.7048 -5.3930 1.2992 23 1 -0.4850 0.8400 0.0041 24 1 -1.7419 -3.6078 0.2746 25 1 -0.5513 -5.7272 -0.0373 26 1 3.4613 -2.2320 -1.9498 27 1 5.8985 -2.2658 -2.2523 28 1 6.2657 -5.2488 0.7790 29 1 3.4515 -6.2610 0.9563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244468713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:26 Heat of formation + Delta-G solvation = -8.179416 kcal Electronic energy + Delta-G solvation = -18332.182560 eV Core-core repulsion = 15245.138075 eV Total energy + Delta-G solvation = -3087.044485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07743 -39.96199 -37.96369 -37.00198 -35.99892 -34.18947 -32.99659 -31.08409 -30.11251 -27.99059 -25.01652 -24.03059 -23.35222 -22.32931 -19.58777 -19.33019 -17.94368 -17.68270 -16.99142 -16.74122 -16.43890 -15.95317 -15.56001 -14.95535 -14.69663 -14.46596 -14.07395 -13.93075 -13.37835 -13.24964 -13.01825 -12.84816 -12.61014 -12.15203 -11.98312 -11.88141 -11.70110 -11.54652 -11.48196 -11.02579 -9.98236 -9.76705 -9.41882 -9.09354 -8.44340 -6.66773 -0.07978 0.29152 0.67903 1.12209 1.18338 1.38654 1.51511 1.54819 2.14817 2.56994 2.73999 3.37337 3.67080 3.71088 3.93898 4.14865 4.17867 4.35579 4.51925 4.57810 4.67831 4.85675 4.95292 5.05303 5.11498 5.20273 5.38443 5.57616 5.72616 5.81475 6.07451 6.43005 6.67890 6.84918 7.30396 7.88746 8.21137 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.007374 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.406270 B = 3796.041349 C = 5335.320700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.023 3.977 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.246 1.246 7 C -0.414 4.414 8 H 0.104 0.896 9 C 0.191 3.809 10 N -0.496 5.496 11 C 0.077 3.923 12 C -0.130 4.130 13 N -0.415 5.415 14 C -0.040 4.040 15 C -0.021 4.021 16 C -0.084 4.084 17 C -0.113 4.113 18 C -0.030 4.030 19 Cl -0.060 7.060 20 C -0.136 4.136 21 C 0.115 3.885 22 O -0.498 6.498 23 H 0.289 0.711 24 H 0.155 0.845 25 H 0.159 0.841 26 H 0.132 0.868 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -2.527 -2.546 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.202 4.202 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.169 1.169 7 C -0.444 4.444 8 H 0.122 0.878 9 C 0.066 3.934 10 N -0.213 5.213 11 C -0.091 4.091 12 C -0.289 4.289 13 N -0.127 5.127 14 C -0.189 4.189 15 C -0.023 4.023 16 C -0.103 4.103 17 C -0.131 4.131 18 C -0.057 4.057 19 Cl -0.031 7.031 20 C -0.155 4.155 21 C 0.069 3.931 22 O -0.309 6.309 23 H 0.100 0.900 24 H 0.172 0.828 25 H 0.176 0.824 26 H 0.150 0.850 27 H 0.177 0.823 28 H 0.171 0.829 29 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.487 -1.938 -2.183 9.926 hybrid contribution -0.395 0.004 -0.093 0.406 sum 9.092 -1.935 -2.276 9.570 Atomic orbital electron populations 1.70111 1.09191 1.30462 1.26040 1.27159 0.95744 1.04886 0.92368 0.85208 0.78900 0.74798 0.80846 1.18900 1.18342 1.16892 1.20032 0.95640 0.89496 1.39209 0.87824 1.20812 0.89213 0.93068 0.90313 1.69507 1.08151 1.26020 1.17626 1.23883 1.01278 0.90157 0.93822 1.22876 0.91139 0.98801 1.16105 1.67719 1.08313 1.29433 1.07252 1.21402 0.93104 0.90016 1.14400 1.18941 0.90613 0.97432 0.95339 1.21200 0.94536 0.97887 0.96709 1.21115 0.92195 0.99232 1.00557 1.20720 0.85141 1.00210 0.99655 1.98344 1.10386 1.97918 1.96422 1.21215 0.93498 1.01521 0.99221 1.18504 0.90023 0.94288 0.90291 1.84665 1.81101 1.29942 1.35216 0.90012 0.82780 0.82407 0.85007 0.82327 0.82859 0.74105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.20 11.54 21.86 0.25 -36.95 15 2 C 0.02 1.10 5.50 85.33 0.47 1.57 15 3 Si 0.98 34.86 29.56 68.60 2.03 36.89 15 4 H -0.26 -8.91 7.11 99.48 0.71 -8.21 15 5 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 6 H -0.25 -8.12 7.11 99.48 0.71 -7.41 15 7 C -0.41 -20.90 7.91 23.34 0.18 -20.71 15 8 H 0.10 4.88 5.84 -2.91 -0.02 4.87 15 9 C 0.19 10.28 6.67 41.55 0.28 10.56 15 10 N -0.50 -26.96 8.12 -184.14 -1.50 -28.46 15 11 C 0.08 3.65 11.17 84.93 0.95 4.60 15 12 C -0.13 -5.78 11.17 84.87 0.95 -4.84 15 13 N -0.42 -19.64 9.89 -178.79 -1.77 -21.41 15 14 C -0.04 -1.99 6.18 43.56 0.27 -1.72 15 15 C -0.02 -0.89 5.18 -19.95 -0.10 -0.99 15 16 C -0.08 -3.08 7.75 22.53 0.17 -2.91 15 17 C -0.11 -3.33 9.80 22.27 0.22 -3.11 15 18 C -0.03 -0.86 6.32 22.40 0.14 -0.72 15 19 Cl -0.06 -1.40 28.94 -2.72 -0.08 -1.48 15 20 C -0.14 -4.13 9.75 22.36 0.22 -3.91 15 21 C 0.12 4.29 6.70 22.84 0.15 4.44 15 22 O -0.50 -18.42 12.53 -90.49 -1.13 -19.55 15 23 H 0.29 13.04 8.29 -92.71 -0.77 12.27 15 24 H 0.15 6.14 8.06 -2.91 -0.02 6.12 15 25 H 0.16 5.81 8.06 -2.91 -0.02 5.79 15 26 H 0.13 5.00 7.41 -2.91 -0.02 4.98 15 27 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 28 H 0.15 3.93 8.06 -2.91 -0.02 3.90 15 29 H 0.40 11.91 9.06 -74.05 -0.67 11.24 15 Total: -1.00 -62.10 278.86 2.25 -59.85 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.55 Total: 28.85 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 3.90 Total: -17.74 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -3.01 Total: -86.82 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.13 Total: -19.55 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -62.10 2.25 -59.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244468713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.671 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds