Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46693 * 240.00047 * 3 2 1 5 5 H 1.48496 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47128 * 120.00056 * 3 2 1 7 7 C 1.40115 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.40989 * 120.00094 * 359.97438 * 7 2 1 10 10 N 1.33676 * 119.12523 * 359.97438 * 9 7 2 11 11 C 1.31549 * 120.84108 * 179.97438 * 10 9 7 12 12 C 1.40535 * 119.08095 * 0.02562 * 11 10 9 13 13 C 1.47745 * 120.79310 * 179.97438 * 12 11 10 14 14 C 1.39704 * 120.17865 * 309.71955 * 13 12 11 15 15 C 1.37792 * 119.91638 * 179.76850 * 14 13 12 16 16 C 1.38698 * 120.27154 * 0.51219 * 15 14 13 17 17 Cl 1.73607 * 119.81903 * 179.76347 * 16 15 14 18 18 C 1.38313 * 120.35286 * 359.74581 * 16 15 14 19 19 C 1.38513 * 120.07901 * 359.97438 * 18 16 15 20 20 O 1.35767 * 120.13616 * 180.02562 * 19 18 16 21 21 C 1.40525 * 118.40308 * 359.97438 * 12 11 10 22 22 N 1.31547 * 119.08954 * 0.02562 * 21 12 11 23 23 H 0.96998 * 119.99734 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.46146 * 180.27555 * 11 10 9 25 25 H 1.08001 * 120.03735 * 0.02562 * 14 13 12 26 26 H 1.07995 * 119.86057 * 180.25779 * 15 14 13 27 27 H 1.08007 * 119.95666 * 180.02562 * 18 16 15 28 28 H 0.96695 * 113.99999 * 269.98088 * 20 19 18 29 29 H 1.08004 * 120.45827 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0946 1.6965 1.2125 7 6 2.0074 -1.2134 0.0005 8 1 3.0874 -1.2134 0.0010 9 6 1.3025 -2.4344 0.0016 10 7 -0.0341 -2.4141 0.0027 11 6 -0.7257 -3.5331 0.0032 12 6 -0.0399 -4.7598 0.0032 13 6 -0.7787 -6.0393 0.0044 14 6 -1.7975 -6.2612 0.9342 15 6 -2.4862 -7.4546 0.9273 16 6 -2.1653 -8.4418 0.0075 17 17 -3.0366 -9.9434 0.0133 18 6 -1.1551 -8.2361 -0.9146 19 6 -0.4572 -7.0397 -0.9245 20 8 0.5343 -6.8364 -1.8295 21 6 1.3652 -4.7402 0.0021 22 7 1.9886 -3.5818 0.0016 23 1 -0.4850 0.8400 0.0004 24 1 -1.8054 -3.5095 -0.0005 25 1 -2.0477 -5.4966 1.6548 26 1 -3.2764 -7.6235 1.6438 27 1 -0.9108 -9.0091 -1.6283 28 1 1.4085 -7.1149 -1.5243 29 1 1.9256 -5.6634 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244469211.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = -3.113552 kcal Electronic energy + Delta-G solvation = -17767.474220 eV Core-core repulsion = 14680.649408 eV Total energy + Delta-G solvation = -3086.824812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22264 -40.15239 -38.00116 -37.02534 -35.80709 -33.87376 -33.39581 -31.20970 -30.35789 -27.78160 -24.79988 -24.39832 -23.40067 -22.34692 -19.90757 -19.32774 -17.98595 -17.58356 -17.06263 -16.62667 -16.43027 -16.19672 -15.38481 -14.85980 -14.72849 -14.50741 -14.14408 -13.93548 -13.55657 -13.12919 -13.05799 -12.88790 -12.70803 -12.26539 -11.99139 -11.89618 -11.71993 -11.33967 -11.15409 -10.97956 -10.24011 -9.82141 -9.42664 -9.03352 -8.47611 -6.75823 -0.08246 0.25738 0.79151 1.06960 1.12908 1.39868 1.53062 1.54184 2.18027 2.52569 2.74044 3.31127 3.81090 3.92857 3.94801 3.97659 4.02725 4.14460 4.34420 4.45373 4.66438 4.90365 4.94653 5.07524 5.16200 5.23799 5.29936 5.60268 5.69167 5.78344 6.09366 6.46873 6.55627 6.83676 7.13722 8.16387 8.30281 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.048795 B = 0.003764 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.694103 B = 7437.194147 C = 7812.660381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.020 3.980 3 Si 1.002 2.998 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.423 4.423 8 H 0.093 0.907 9 C 0.355 3.645 10 N -0.540 5.540 11 C 0.162 3.838 12 C -0.306 4.306 13 C -0.022 4.022 14 C -0.099 4.099 15 C -0.107 4.107 16 C -0.039 4.039 17 Cl -0.065 7.065 18 C -0.131 4.131 19 C 0.106 3.894 20 O -0.500 6.500 21 C 0.183 3.817 22 N -0.618 5.618 23 H 0.287 0.713 24 H 0.147 0.853 25 H 0.137 0.863 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.403 0.597 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -12.044 1.282 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.204 4.204 3 Si 0.820 3.180 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.457 4.457 8 H 0.111 0.889 9 C 0.120 3.880 10 N -0.257 5.257 11 C -0.013 4.013 12 C -0.316 4.316 13 C -0.024 4.024 14 C -0.118 4.118 15 C -0.125 4.125 16 C -0.066 4.066 17 Cl -0.036 7.036 18 C -0.150 4.150 19 C 0.061 3.939 20 O -0.313 6.313 21 C 0.010 3.990 22 N -0.338 5.338 23 H 0.098 0.902 24 H 0.164 0.836 25 H 0.155 0.845 26 H 0.174 0.826 27 H 0.168 0.832 28 H 0.261 0.739 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.308 -10.819 0.930 11.682 hybrid contribution 0.101 -0.510 0.154 0.542 sum -4.206 -11.329 1.084 12.133 Atomic orbital electron populations 1.70183 1.09019 1.30153 1.26517 1.27153 0.95949 1.04855 0.92458 0.84973 0.78505 0.74197 0.80320 1.18190 1.18536 1.18008 1.19714 0.95219 0.89024 1.41727 0.88890 1.20310 0.86558 0.91825 0.89262 1.69301 1.08206 1.28286 1.19906 1.23454 0.99887 0.88038 0.89879 1.19761 0.95135 0.93450 1.23217 1.19142 0.96401 0.92637 0.94221 1.21257 0.95072 0.97421 0.98053 1.21144 1.00668 0.91819 0.98895 1.20768 0.97128 0.89184 0.99479 1.98356 1.75425 1.31641 1.98152 1.21245 0.96909 0.97164 0.99688 1.18480 0.93265 0.92214 0.89971 1.84775 1.19481 1.86527 1.40485 1.23057 0.90966 0.95877 0.89080 1.68646 1.41282 0.99151 1.24681 0.90178 0.83573 0.84508 0.82639 0.83165 0.73856 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.46 11.40 21.85 0.25 -38.21 15 2 C 0.02 1.02 5.50 85.32 0.47 1.49 15 3 Si 1.00 36.79 29.56 68.60 2.03 38.81 15 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 5 H -0.26 -8.91 7.11 99.48 0.71 -8.21 15 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 7 C -0.42 -23.24 9.35 23.40 0.22 -23.02 15 8 H 0.09 4.90 7.85 -2.91 -0.02 4.87 15 9 C 0.35 20.18 7.35 134.86 0.99 21.17 15 10 N -0.54 -29.98 7.82 -193.14 -1.51 -31.49 15 11 C 0.16 7.66 10.86 85.30 0.93 8.58 15 12 C -0.31 -12.81 5.31 -19.65 -0.10 -12.91 15 13 C -0.02 -0.73 5.53 -19.92 -0.11 -0.84 15 14 C -0.10 -2.80 9.56 22.52 0.22 -2.59 15 15 C -0.11 -2.50 9.81 22.27 0.22 -2.28 15 16 C -0.04 -0.91 6.33 22.40 0.14 -0.77 15 17 Cl -0.06 -1.31 28.94 -2.72 -0.08 -1.38 15 18 C -0.13 -3.26 9.75 22.35 0.22 -3.05 15 19 C 0.11 3.16 6.64 22.83 0.15 3.31 15 20 O -0.50 -14.83 12.15 -90.94 -1.11 -15.93 15 21 C 0.18 7.96 10.11 85.29 0.86 8.83 15 22 N -0.62 -32.34 10.33 -193.15 -2.00 -34.34 15 23 H 0.29 13.32 8.29 -92.71 -0.77 12.55 15 24 H 0.15 6.12 8.06 -2.91 -0.02 6.10 15 25 H 0.14 3.71 8.06 -2.91 -0.02 3.69 15 26 H 0.16 2.81 8.06 -2.91 -0.02 2.78 15 27 H 0.15 3.17 8.06 -2.91 -0.02 3.15 15 28 H 0.40 8.32 8.31 -74.06 -0.62 7.70 15 29 H 0.16 5.50 7.21 -2.91 -0.02 5.48 15 Total: -1.00 -65.76 281.51 2.38 -63.38 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.60 Total: 21.23 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 4.20 Total: -2.07 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -3.26 Total: -104.04 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.11 Total: -15.93 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.38 kcal Total: -65.76 2.38 -63.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244469211.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.267 kcal (2) G-P(sol) polarization free energy of solvation -65.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds