Wall clock time and date at job start Mon Mar 30 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48501 * 109.46732 * 275.41692 * 3 2 1 5 5 H 1.48499 * 109.47006 * 35.41140 * 3 2 1 6 6 H 1.48501 * 109.47324 * 155.41814 * 3 2 1 7 7 C 1.39932 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00054 * 341.73619 * 7 2 1 9 9 C 1.41430 * 119.99757 * 161.72963 * 7 2 1 10 10 C 1.40790 * 120.18858 * 330.18125 * 9 7 2 11 11 C 1.37675 * 119.99035 * 180.02562 * 10 9 7 12 12 C 1.38441 * 120.38152 * 0.02562 * 11 10 9 13 13 C 1.39695 * 120.37379 * 359.74046 * 12 11 10 14 14 C 1.48401 * 119.99707 * 180.25857 * 13 12 11 15 15 C 1.39318 * 120.11129 * 129.97641 * 14 13 12 16 16 C 1.38224 * 119.86007 * 179.78658 * 15 14 13 17 17 F 1.35104 * 119.94642 * 180.23070 * 16 15 14 18 18 C 1.38561 * 120.09818 * 0.47122 * 16 15 14 19 19 C 1.38247 * 120.23209 * 359.78378 * 18 16 15 20 20 C 1.38176 * 120.13172 * 359.97438 * 19 18 16 21 21 Cl 1.73594 * 120.04861 * 180.02562 * 20 19 18 22 22 C 1.38776 * 119.99987 * 0.51248 * 13 12 11 23 23 H 0.96993 * 119.99927 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00036 * 0.04379 * 10 9 7 25 25 H 1.08001 * 119.80917 * 180.02562 * 11 10 9 26 26 H 1.07991 * 119.81153 * 180.02562 * 12 11 10 27 27 H 1.07996 * 120.06479 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.88489 * 179.76309 * 18 16 15 29 29 H 1.07994 * 119.93361 * 179.97438 * 19 18 16 30 30 H 1.08001 * 120.18280 * 179.77024 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1124 -1.3939 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4099 0.5824 7 6 2.0080 -1.2118 0.0005 8 1 1.5088 -2.1235 0.2941 9 6 3.3688 -1.2428 -0.3834 10 6 3.8626 -0.3109 -1.3162 11 6 5.1879 -0.3451 -1.6875 12 6 6.0416 -1.2926 -1.1490 13 6 5.5694 -2.2215 -0.2186 14 6 6.4932 -3.2298 0.3575 15 6 6.5551 -3.4134 1.7372 16 6 7.4143 -4.3572 2.2680 17 9 7.4723 -4.5399 3.6054 18 6 8.2196 -5.1125 1.4309 19 6 8.1653 -4.9299 0.0617 20 6 7.3063 -3.9926 -0.4796 21 17 7.2393 -3.7656 -2.1993 22 6 4.2352 -2.2046 0.1628 23 1 -0.4850 0.8400 0.0004 24 1 3.2018 0.4307 -1.7401 25 1 5.5636 0.3714 -2.4029 26 1 7.0796 -1.3107 -1.4465 27 1 5.9303 -2.8223 2.3902 28 1 8.8924 -5.8463 1.8496 29 1 8.7955 -5.5210 -0.5863 30 1 3.8661 -2.9237 0.8791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245131082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:53 Heat of formation + Delta-G solvation = -16.942035 kcal Electronic energy + Delta-G solvation = -17825.526037 eV Core-core repulsion = 14718.181616 eV Total energy + Delta-G solvation = -3107.344422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.88835 -39.31045 -37.49088 -36.16493 -33.79791 -32.17458 -30.57046 -30.09262 -28.48591 -25.25875 -23.41582 -22.60628 -20.77142 -20.49869 -17.95978 -16.74371 -16.44218 -16.37499 -15.86780 -15.59313 -14.72594 -14.34786 -13.95205 -13.70365 -13.47320 -13.06461 -12.78057 -12.66542 -12.30663 -11.99437 -11.75439 -11.47191 -11.06661 -10.85909 -10.76136 -10.59493 -10.38676 -9.86107 -9.69097 -9.28467 -9.02158 -8.50611 -7.75834 -7.51291 -6.98118 -4.53198 0.97034 1.10688 2.32160 2.49035 2.56733 3.08090 3.18814 3.28314 3.53447 3.94735 4.20160 4.42410 4.68842 4.83545 5.07005 5.25253 5.34990 5.69197 5.81405 5.93417 6.03587 6.07853 6.19287 6.27845 6.44239 6.63359 6.77418 6.84557 7.05530 7.30815 7.50187 7.62702 7.79094 7.99030 8.30330 8.57068 8.75028 10.04496 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.005617 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.910038 B = 4983.834878 C = 5773.908194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.085 3.915 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.089 3.911 10 C -0.226 4.226 11 C -0.082 4.082 12 C -0.207 4.207 13 C -0.041 4.041 14 C 0.023 3.977 15 C -0.137 4.137 16 C 0.102 3.898 17 F -0.139 7.139 18 C -0.158 4.158 19 C -0.084 4.084 20 C -0.044 4.044 21 Cl -0.053 7.053 22 C -0.178 4.178 23 H 0.285 0.715 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.364 -5.734 0.574 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.477 4.477 8 H 0.109 0.891 9 C 0.087 3.913 10 C -0.246 4.246 11 C -0.100 4.100 12 C -0.226 4.226 13 C -0.041 4.041 14 C 0.022 3.978 15 C -0.156 4.156 16 C 0.083 3.917 17 F -0.118 7.118 18 C -0.177 4.177 19 C -0.103 4.103 20 C -0.071 4.071 21 Cl -0.024 7.024 22 C -0.197 4.197 23 H 0.096 0.904 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.064 -5.633 0.492 14.235 hybrid contribution 0.163 0.719 0.070 0.740 sum 13.227 -4.914 0.563 14.122 Atomic orbital electron populations 1.69694 1.08084 1.30260 1.35180 1.26130 0.94696 1.01674 0.90899 0.86339 0.81341 0.79871 0.78854 1.19633 1.21795 1.16719 1.19462 0.93053 0.96173 1.39050 0.89122 1.17627 0.93010 0.90824 0.89881 1.21133 0.95647 1.04428 1.03351 1.20522 0.93722 0.97282 0.98452 1.20391 0.98562 1.00148 1.03494 1.18218 0.92670 0.94870 0.98329 1.18820 0.93647 0.94053 0.91262 1.21293 1.00106 0.99182 0.94995 1.17648 0.98740 0.98021 0.77291 1.91500 1.95482 1.94455 1.30315 1.20975 1.01743 1.02042 0.92958 1.20772 0.97941 0.97159 0.94404 1.21045 1.00366 0.99864 0.85850 1.98371 1.97624 1.96347 1.10053 1.21064 0.91469 1.03563 1.03635 0.90435 0.88120 0.88523 0.88325 0.83548 0.84300 0.84252 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.31 13.93 55.55 0.77 -20.54 16 2 C 0.08 2.19 5.40 -17.35 -0.09 2.10 16 3 Si 0.91 20.46 24.52 -169.99 -4.17 16.29 16 4 H -0.27 -5.90 6.71 56.52 0.38 -5.52 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 7 C -0.45 -11.91 9.57 -37.73 -0.36 -12.27 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.09 2.21 5.10 -106.86 -0.55 1.66 16 10 C -0.23 -5.32 7.17 -38.82 -0.28 -5.60 16 11 C -0.08 -1.71 10.01 -39.71 -0.40 -2.11 16 12 C -0.21 -4.14 8.18 -38.96 -0.32 -4.46 16 13 C -0.04 -0.82 5.11 -104.97 -0.54 -1.36 16 14 C 0.02 0.40 5.47 -104.87 -0.57 -0.18 16 15 C -0.14 -2.14 9.48 -39.19 -0.37 -2.51 16 16 C 0.10 1.42 7.29 -39.47 -0.29 1.13 16 17 F -0.14 -1.93 17.26 2.25 0.04 -1.89 16 18 C -0.16 -1.86 10.02 -39.46 -0.40 -2.25 16 19 C -0.08 -1.02 9.82 -39.60 -0.39 -1.41 16 20 C -0.04 -0.67 6.28 -39.17 -0.25 -0.92 16 21 Cl -0.05 -0.80 25.94 -51.86 -1.35 -2.15 16 22 C -0.18 -4.00 9.25 -38.53 -0.36 -4.36 16 23 H 0.29 6.81 8.30 -40.82 -0.34 6.48 16 24 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 25 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 26 H 0.10 1.80 7.11 -52.49 -0.37 1.42 16 27 H 0.15 2.26 8.04 -52.49 -0.42 1.84 16 28 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.10 2.22 8.04 -52.49 -0.42 1.80 16 LS Contribution 278.91 15.07 4.20 4.20 Total: -1.00 -26.50 278.91 -7.97 -34.47 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.33 Total: 2.14 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -5.15 Total: -32.53 kcal Atomic # 7 Polarization: -21.31 SS G_CDS: 0.77 Total: -20.54 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.17 Total: 16.29 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.35 Total: -2.15 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.50 -7.97 -34.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245131082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.529 kcal (2) G-P(sol) polarization free energy of solvation -26.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds