Wall clock time and date at job start Mon Mar 30 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48501 * 109.46732 * 275.41692 * 3 2 1 5 5 H 1.48499 * 109.47006 * 35.41140 * 3 2 1 6 6 H 1.48501 * 109.47324 * 155.41814 * 3 2 1 7 7 C 1.39932 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00054 * 341.73619 * 7 2 1 9 9 C 1.41430 * 119.99757 * 161.72963 * 7 2 1 10 10 C 1.40790 * 120.18858 * 330.18125 * 9 7 2 11 11 C 1.37675 * 119.99035 * 180.02562 * 10 9 7 12 12 C 1.38441 * 120.38152 * 0.02562 * 11 10 9 13 13 C 1.39695 * 120.37379 * 359.74046 * 12 11 10 14 14 C 1.48401 * 119.99707 * 180.25857 * 13 12 11 15 15 C 1.39318 * 120.11129 * 129.97641 * 14 13 12 16 16 C 1.38224 * 119.86007 * 179.78658 * 15 14 13 17 17 F 1.35104 * 119.94642 * 180.23070 * 16 15 14 18 18 C 1.38561 * 120.09818 * 0.47122 * 16 15 14 19 19 C 1.38247 * 120.23209 * 359.78378 * 18 16 15 20 20 C 1.38176 * 120.13172 * 359.97438 * 19 18 16 21 21 Cl 1.73594 * 120.04861 * 180.02562 * 20 19 18 22 22 C 1.38776 * 119.99987 * 0.51248 * 13 12 11 23 23 H 0.96993 * 119.99927 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00036 * 0.04379 * 10 9 7 25 25 H 1.08001 * 119.80917 * 180.02562 * 11 10 9 26 26 H 1.07991 * 119.81153 * 180.02562 * 12 11 10 27 27 H 1.07996 * 120.06479 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.88489 * 179.76309 * 18 16 15 29 29 H 1.07994 * 119.93361 * 179.97438 * 19 18 16 30 30 H 1.08001 * 120.18280 * 179.77024 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1124 -1.3939 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4099 0.5824 7 6 2.0080 -1.2118 0.0005 8 1 1.5088 -2.1235 0.2941 9 6 3.3688 -1.2428 -0.3834 10 6 3.8626 -0.3109 -1.3162 11 6 5.1879 -0.3451 -1.6875 12 6 6.0416 -1.2926 -1.1490 13 6 5.5694 -2.2215 -0.2186 14 6 6.4932 -3.2298 0.3575 15 6 6.5551 -3.4134 1.7372 16 6 7.4143 -4.3572 2.2680 17 9 7.4723 -4.5399 3.6054 18 6 8.2196 -5.1125 1.4309 19 6 8.1653 -4.9299 0.0617 20 6 7.3063 -3.9926 -0.4796 21 17 7.2393 -3.7656 -2.1993 22 6 4.2352 -2.2046 0.1628 23 1 -0.4850 0.8400 0.0004 24 1 3.2018 0.4307 -1.7401 25 1 5.5636 0.3714 -2.4029 26 1 7.0796 -1.3107 -1.4465 27 1 5.9303 -2.8223 2.3902 28 1 8.8924 -5.8463 1.8496 29 1 8.7955 -5.5210 -0.5863 30 1 3.8661 -2.9237 0.8791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245131082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:53 Heat of formation + Delta-G solvation = -29.256939 kcal Electronic energy + Delta-G solvation = -17826.060052 eV Core-core repulsion = 14718.181616 eV Total energy + Delta-G solvation = -3107.878436 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.97834 -40.60654 -39.07822 -37.32920 -35.62293 -33.62348 -32.23471 -31.36192 -29.93394 -27.10220 -24.75833 -23.80168 -22.35613 -22.15369 -19.52721 -18.20279 -17.59972 -17.57228 -17.52598 -16.69488 -16.49974 -15.72119 -15.63592 -14.93894 -14.68855 -14.61172 -14.27966 -14.14689 -13.75889 -13.51731 -13.39697 -12.83640 -12.59057 -12.45065 -12.27710 -12.13182 -11.88420 -11.51964 -11.47965 -11.01803 -10.31750 -9.70513 -9.54207 -9.11309 -8.90262 -6.51689 -0.21786 -0.00745 0.78943 0.85694 1.16432 1.25836 1.40261 1.48253 2.11294 2.36285 2.60779 3.10267 3.45302 3.55362 3.76312 3.99624 4.16512 4.32945 4.46055 4.49949 4.67922 4.78339 4.91795 4.96482 4.98604 5.00375 5.16595 5.28250 5.55277 5.66630 5.76828 5.85605 5.93740 6.20089 6.36445 6.70632 6.80868 8.18631 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.005617 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.910038 B = 4983.834878 C = 5773.908194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.049 3.951 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.487 4.487 8 H 0.054 0.946 9 C 0.071 3.929 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.191 4.191 13 C -0.032 4.032 14 C -0.009 4.009 15 C -0.147 4.147 16 C 0.097 3.903 17 F -0.140 7.140 18 C -0.134 4.134 19 C -0.071 4.071 20 C -0.049 4.049 21 Cl -0.056 7.056 22 C -0.194 4.194 23 H 0.293 0.707 24 H 0.098 0.902 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.135 0.865 28 H 0.179 0.821 29 H 0.177 0.823 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.232 -6.311 0.036 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.165 4.165 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.069 3.931 10 C -0.259 4.259 11 C -0.102 4.102 12 C -0.210 4.210 13 C -0.032 4.032 14 C -0.010 4.010 15 C -0.166 4.166 16 C 0.078 3.922 17 F -0.118 7.118 18 C -0.152 4.152 19 C -0.089 4.089 20 C -0.076 4.076 21 Cl -0.027 7.027 22 C -0.213 4.213 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.149 0.851 26 H 0.143 0.857 27 H 0.153 0.847 28 H 0.196 0.804 29 H 0.194 0.806 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.936 -6.217 -0.050 18.041 hybrid contribution -0.769 0.685 0.253 1.061 sum 16.167 -5.532 0.203 17.088 Atomic orbital electron populations 1.69726 1.09174 1.31403 1.37491 1.26784 0.95291 1.04111 0.90350 0.85520 0.79640 0.76613 0.79560 1.18144 1.20471 1.17646 1.19431 0.94506 0.95599 1.42140 0.92759 1.17764 0.92570 0.92176 0.90600 1.21232 0.96946 1.04300 1.03462 1.20914 0.92706 0.97939 0.98645 1.20807 0.99595 0.98658 1.01938 1.18474 0.92142 0.95196 0.97378 1.18634 0.95018 0.95217 0.92091 1.21236 1.00795 1.00026 0.94543 1.17742 0.98871 0.98023 0.77564 1.91504 1.95472 1.94405 1.30440 1.21420 1.00365 1.00992 0.92449 1.21173 0.96880 0.95894 0.94981 1.21195 1.00555 1.00355 0.85512 1.98372 1.97663 1.96407 1.10246 1.21144 0.92647 1.03409 1.04136 0.89636 0.88392 0.85126 0.85703 0.84666 0.80369 0.80568 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.19 13.93 21.82 0.30 -46.89 16 2 C 0.05 2.64 5.40 85.25 0.46 3.10 16 3 Si 0.96 42.89 24.52 68.60 1.68 44.57 16 4 H -0.26 -10.71 6.71 99.48 0.67 -10.04 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.25 -11.46 6.86 99.48 0.68 -10.77 16 7 C -0.49 -27.60 9.57 23.47 0.22 -27.38 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 C 0.07 3.65 5.10 -21.32 -0.11 3.54 16 10 C -0.24 -11.25 7.17 22.76 0.16 -11.09 16 11 C -0.08 -3.36 10.01 22.18 0.22 -3.13 16 12 C -0.19 -7.22 8.18 22.67 0.19 -7.03 16 13 C -0.03 -1.26 5.11 -20.09 -0.10 -1.36 16 14 C -0.01 -0.28 5.47 -20.03 -0.11 -0.39 16 15 C -0.15 -4.45 9.48 22.53 0.21 -4.23 16 16 C 0.10 2.43 7.29 22.34 0.16 2.59 16 17 F -0.14 -3.55 17.26 44.97 0.78 -2.77 16 18 C -0.13 -2.49 10.02 22.35 0.22 -2.27 16 19 C -0.07 -1.38 9.82 22.26 0.22 -1.16 16 20 C -0.05 -1.33 6.28 22.54 0.14 -1.19 16 21 Cl -0.06 -1.52 25.94 -2.72 -0.07 -1.60 16 22 C -0.19 -8.99 9.25 22.95 0.21 -8.78 16 23 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 24 H 0.10 4.59 4.72 -2.91 -0.01 4.57 16 25 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 26 H 0.13 4.09 7.11 -2.92 -0.02 4.07 16 27 H 0.14 4.27 8.04 -2.91 -0.02 4.25 16 28 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 30 H 0.10 4.51 8.04 -2.91 -0.02 4.48 16 Total: -1.00 -60.24 278.91 5.91 -54.33 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.11 Total: 11.14 kcal Atomic # 6 Polarization: -60.90 SS G_CDS: 2.11 Total: -58.79 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.30 Total: -46.89 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.68 Total: 44.57 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.60 kcal Total: -60.24 5.91 -54.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245131082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.076 kcal (2) G-P(sol) polarization free energy of solvation -60.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds