Wall clock time and date at job start Mon Mar 30 2020 01:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 H 1.08996 * 109.47184 * 54.24271 * 3 2 1 5 5 C 1.50706 * 109.47178 * 174.24493 * 3 2 1 6 6 H 1.08001 * 120.00147 * 119.99622 * 5 3 2 7 7 C 1.37875 * 119.99900 * 300.00069 * 5 3 2 8 8 N 1.31517 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00332 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47162 * 89.99592 * 9 7 5 11 11 H 1.48489 * 109.47286 * 209.99892 * 9 7 5 12 12 H 1.48503 * 109.46869 * 330.00294 * 9 7 5 13 13 N 1.46907 * 109.47260 * 294.24157 * 3 2 1 14 14 C 1.46900 * 110.99794 * 105.05004 * 13 3 2 15 15 H 1.09001 * 109.46903 * 345.57760 * 14 13 3 16 16 C 1.50702 * 109.46878 * 225.57933 * 14 13 3 17 17 C 1.38229 * 119.99828 * 140.00521 * 16 14 13 18 18 C 1.38230 * 120.00231 * 179.97438 * 17 16 14 19 19 C 1.38242 * 119.99888 * 359.95638 * 18 17 16 20 20 C 1.38231 * 119.99610 * 359.97438 * 19 18 17 21 21 C 1.38230 * 120.00446 * 0.07377 * 20 19 18 22 22 C 1.52997 * 109.46715 * 105.57995 * 14 13 3 23 23 C 1.53000 * 109.46960 * 182.43780 * 22 14 13 24 24 C 1.53001 * 109.47506 * 302.43577 * 22 14 13 25 25 C 1.52994 * 109.47380 * 62.43949 * 22 14 13 26 26 H 1.08996 * 109.47388 * 301.11259 * 1 2 3 27 27 H 1.08998 * 109.47212 * 61.11235 * 1 2 3 28 28 H 1.08995 * 109.47175 * 181.11084 * 1 2 3 29 29 H 1.08995 * 109.47577 * 239.99986 * 2 1 3 30 30 H 1.09000 * 109.47586 * 119.99623 * 2 1 3 31 31 H 0.97000 * 119.99813 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99977 * 229.00638 * 13 3 2 33 33 H 1.08003 * 120.00444 * 359.97424 * 17 16 14 34 34 H 1.07998 * 120.00383 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.00199 * 179.72188 * 19 18 17 36 36 H 1.08003 * 120.00174 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00330 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.47099 * 59.99878 * 23 22 14 39 39 H 1.09001 * 109.47467 * 179.97438 * 23 22 14 40 40 H 1.08999 * 109.47482 * 300.00268 * 23 22 14 41 41 H 1.08999 * 109.46870 * 66.16204 * 24 22 14 42 42 H 1.08993 * 109.47520 * 186.16747 * 24 22 14 43 43 H 1.09001 * 109.46863 * 306.16851 * 24 22 14 44 44 H 1.09003 * 109.47367 * 59.99586 * 25 22 14 45 45 H 1.09000 * 109.47406 * 179.97438 * 25 22 14 46 46 H 1.09005 * 109.47062 * 299.99872 * 25 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5949 1.9852 0.8339 5 6 3.5402 1.4449 0.1425 6 1 4.1551 1.8861 -0.6280 7 6 4.1278 0.8839 1.2565 8 7 3.3790 0.3471 2.1949 9 14 5.9874 0.8875 1.4335 10 1 6.4153 2.1236 2.1366 11 1 6.4123 -0.3000 2.2172 12 1 6.6128 0.8421 0.0874 13 7 1.6670 2.0938 -1.2629 14 6 0.5527 3.0300 -1.0634 15 1 0.0912 2.8441 -0.0935 16 6 -0.4702 2.8327 -2.1525 17 6 -1.8184 2.8820 -1.8515 18 6 -2.7566 2.7017 -2.8504 19 6 -2.3466 2.4728 -4.1507 20 6 -0.9983 2.4250 -4.4518 21 6 -0.0601 2.6043 -3.4527 22 6 1.0783 4.4660 -1.1114 23 6 -0.0714 5.4391 -0.8432 24 6 2.1604 4.6489 -0.0453 25 6 1.6716 4.7460 -2.4935 26 1 -0.3634 0.5310 0.8798 27 1 -0.3633 0.4964 -0.8998 28 1 -0.3633 -1.0274 0.0199 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7923 -0.0473 2.9788 32 1 2.4604 2.5591 -1.6779 33 1 -2.1388 3.0615 -0.8358 34 1 -3.8100 2.7398 -2.6153 35 1 -3.0796 2.3274 -4.9304 36 1 -0.6779 2.2458 -5.4675 37 1 0.9933 2.5665 -3.6879 38 1 -0.4941 5.2396 0.1416 39 1 0.3031 6.4622 -0.8769 40 1 -0.8424 5.3089 -1.6026 41 1 3.0257 4.0357 -0.2969 42 1 2.4572 5.6969 -0.0049 43 1 1.7692 4.3444 0.9254 44 1 0.9007 4.6157 -3.2531 45 1 2.0457 5.7693 -2.5279 46 1 2.4908 4.0527 -2.6846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:06 Heat of formation + Delta-G solvation = 6.883838 kcal Electronic energy + Delta-G solvation = -22945.264689 eV Core-core repulsion = 20026.922520 eV Total energy + Delta-G solvation = -2918.342168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76654 -37.38168 -34.92491 -32.14240 -31.02448 -30.68577 -30.01680 -27.04838 -26.74962 -26.54978 -24.21360 -22.56436 -22.03477 -20.94802 -19.30796 -18.43723 -16.91653 -16.06373 -15.19883 -15.02604 -14.62533 -14.49663 -13.92254 -13.70289 -13.24697 -13.16736 -13.07695 -12.66174 -12.21811 -12.14733 -11.91407 -11.84219 -11.61044 -11.44118 -11.28128 -11.22703 -10.95328 -10.79355 -10.75903 -10.63156 -10.44095 -10.25108 -10.09580 -10.04047 -9.57853 -9.37401 -8.82865 -8.51810 -8.41358 -8.19545 -7.20730 -6.01995 -4.09594 1.75184 1.79262 3.27400 3.35202 3.37843 4.16424 4.39359 5.00772 5.17250 5.21003 5.26658 5.28934 5.32475 5.38293 5.48991 5.67838 5.86030 5.90419 5.94530 5.97780 6.06266 6.13811 6.20138 6.27547 6.31176 6.38685 6.43315 6.43747 6.52837 6.54376 6.58250 6.72939 6.73451 6.82312 6.86606 6.97314 7.11273 7.15542 7.23344 7.39130 7.51993 7.63103 7.78062 7.99137 8.29060 8.42919 8.70439 9.04023 9.56251 11.02222 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.005995 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.748766 B = 4669.641104 C = 5230.588187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.013 0.987 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.133 3.867 15 H 0.073 0.927 16 C -0.042 4.042 17 C -0.121 4.121 18 C -0.127 4.127 19 C -0.136 4.136 20 C -0.130 4.130 21 C -0.090 4.090 22 C -0.084 4.084 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.145 4.145 26 H 0.032 0.968 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.260 0.740 32 H 0.333 0.667 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 7.285 -8.403 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C 0.114 3.886 4 H 0.031 0.969 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.311 5.311 14 C 0.022 3.978 15 H 0.091 0.909 16 C -0.043 4.043 17 C -0.140 4.140 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.108 4.108 22 C -0.085 4.085 23 C -0.196 4.196 24 C -0.200 4.200 25 C -0.202 4.202 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.154 0.846 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.746 6.648 -8.411 13.836 hybrid contribution 1.380 0.569 0.697 1.647 sum -7.366 7.217 -7.714 12.879 Atomic orbital electron populations 1.21794 0.99603 0.98562 0.99976 1.21529 0.91537 0.99737 1.01561 1.19194 0.93912 0.91056 0.84433 0.96922 1.21440 0.91674 1.38223 1.04855 0.92580 1.24887 0.97802 0.95124 0.95824 1.69890 1.34672 1.38539 1.09276 0.86641 0.86040 0.77466 0.78109 1.20832 1.21282 1.19945 1.60804 1.09729 1.31137 1.29460 1.20632 0.92084 0.89750 0.95304 0.90925 1.20022 0.93510 0.95831 0.94909 1.21004 0.92857 1.01214 0.98897 1.20978 0.98854 1.01421 0.93279 1.20971 0.95800 1.02266 0.96369 1.21105 0.93289 1.01364 0.99061 1.21026 0.99676 0.97846 0.92279 1.21044 0.95836 0.95689 0.95914 1.21865 0.98070 0.98355 1.01278 1.21921 0.99151 1.00618 0.98297 1.22028 1.00926 1.00750 0.96527 0.94875 0.93313 0.95682 0.94729 0.89499 0.92965 0.84614 0.86856 0.86977 0.87116 0.86910 0.85766 0.93028 0.93322 0.92651 0.90673 0.93820 0.92655 0.92096 0.93417 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.34 37.15 0.35 -2.64 16 2 C -0.10 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.21 1.37 -68.86 -0.09 5.12 16 4 H 0.01 0.34 6.90 -51.93 -0.36 -0.02 16 5 C -0.52 -13.46 7.69 -34.44 -0.26 -13.72 16 6 H 0.06 1.43 7.37 -52.49 -0.39 1.04 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.55 11.29 55.43 0.63 -23.93 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.37 4.82 -102.16 -0.49 -13.87 16 14 C 0.13 2.28 0.88 -68.87 -0.06 2.22 16 15 H 0.07 1.39 6.80 -51.93 -0.35 1.04 16 16 C -0.04 -0.66 2.92 -104.63 -0.31 -0.96 16 17 C -0.12 -1.77 8.73 -39.59 -0.35 -2.12 16 18 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 19 C -0.14 -1.74 10.05 -39.58 -0.40 -2.14 16 20 C -0.13 -1.76 10.05 -39.59 -0.40 -2.16 16 21 C -0.09 -1.36 7.03 -39.58 -0.28 -1.64 16 22 C -0.08 -1.27 0.54 -154.51 -0.08 -1.35 16 23 C -0.14 -1.86 8.13 37.16 0.30 -1.56 16 24 C -0.14 -2.40 7.60 37.16 0.28 -2.12 16 25 C -0.15 -2.02 7.13 37.15 0.26 -1.76 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.99 6.35 -51.93 -0.33 0.66 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 2.33 5.94 -51.93 -0.31 2.02 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.33 6.52 4.63 -39.29 -0.18 6.34 16 33 H 0.11 1.57 8.04 -52.48 -0.42 1.15 16 34 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.12 1.90 6.89 -52.49 -0.36 1.53 16 38 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.73 6.69 -51.93 -0.35 0.39 16 41 H 0.07 1.42 6.04 -51.93 -0.31 1.11 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 44 H 0.06 0.83 5.62 -51.93 -0.29 0.53 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.87 6.36 -51.93 -0.33 0.54 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -26.54 344.32 -9.13 -35.67 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.76 Total: 9.12 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -1.67 Total: -27.91 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.13 Total: -37.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.54 -9.13 -35.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.552 kcal (2) G-P(sol) polarization free energy of solvation -26.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds