Wall clock time and date at job start Mon Mar 30 2020 01:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 H 1.08996 * 109.47184 * 54.24271 * 3 2 1 5 5 C 1.50706 * 109.47178 * 174.24493 * 3 2 1 6 6 H 1.08001 * 120.00147 * 119.99622 * 5 3 2 7 7 C 1.37875 * 119.99900 * 300.00069 * 5 3 2 8 8 N 1.31517 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00332 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47162 * 89.99592 * 9 7 5 11 11 H 1.48489 * 109.47286 * 209.99892 * 9 7 5 12 12 H 1.48503 * 109.46869 * 330.00294 * 9 7 5 13 13 N 1.46907 * 109.47260 * 294.24157 * 3 2 1 14 14 C 1.46900 * 110.99794 * 105.05004 * 13 3 2 15 15 H 1.09001 * 109.46903 * 345.57760 * 14 13 3 16 16 C 1.50702 * 109.46878 * 225.57933 * 14 13 3 17 17 C 1.38229 * 119.99828 * 140.00521 * 16 14 13 18 18 C 1.38230 * 120.00231 * 179.97438 * 17 16 14 19 19 C 1.38242 * 119.99888 * 359.95638 * 18 17 16 20 20 C 1.38231 * 119.99610 * 359.97438 * 19 18 17 21 21 C 1.38230 * 120.00446 * 0.07377 * 20 19 18 22 22 C 1.52997 * 109.46715 * 105.57995 * 14 13 3 23 23 C 1.53000 * 109.46960 * 182.43780 * 22 14 13 24 24 C 1.53001 * 109.47506 * 302.43577 * 22 14 13 25 25 C 1.52994 * 109.47380 * 62.43949 * 22 14 13 26 26 H 1.08996 * 109.47388 * 301.11259 * 1 2 3 27 27 H 1.08998 * 109.47212 * 61.11235 * 1 2 3 28 28 H 1.08995 * 109.47175 * 181.11084 * 1 2 3 29 29 H 1.08995 * 109.47577 * 239.99986 * 2 1 3 30 30 H 1.09000 * 109.47586 * 119.99623 * 2 1 3 31 31 H 0.97000 * 119.99813 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99977 * 229.00638 * 13 3 2 33 33 H 1.08003 * 120.00444 * 359.97424 * 17 16 14 34 34 H 1.07998 * 120.00383 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.00199 * 179.72188 * 19 18 17 36 36 H 1.08003 * 120.00174 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00330 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.47099 * 59.99878 * 23 22 14 39 39 H 1.09001 * 109.47467 * 179.97438 * 23 22 14 40 40 H 1.08999 * 109.47482 * 300.00268 * 23 22 14 41 41 H 1.08999 * 109.46870 * 66.16204 * 24 22 14 42 42 H 1.08993 * 109.47520 * 186.16747 * 24 22 14 43 43 H 1.09001 * 109.46863 * 306.16851 * 24 22 14 44 44 H 1.09003 * 109.47367 * 59.99586 * 25 22 14 45 45 H 1.09000 * 109.47406 * 179.97438 * 25 22 14 46 46 H 1.09005 * 109.47062 * 299.99872 * 25 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5949 1.9852 0.8339 5 6 3.5402 1.4449 0.1425 6 1 4.1551 1.8861 -0.6280 7 6 4.1278 0.8839 1.2565 8 7 3.3790 0.3471 2.1949 9 14 5.9874 0.8875 1.4335 10 1 6.4153 2.1236 2.1366 11 1 6.4123 -0.3000 2.2172 12 1 6.6128 0.8421 0.0874 13 7 1.6670 2.0938 -1.2629 14 6 0.5527 3.0300 -1.0634 15 1 0.0912 2.8441 -0.0935 16 6 -0.4702 2.8327 -2.1525 17 6 -1.8184 2.8820 -1.8515 18 6 -2.7566 2.7017 -2.8504 19 6 -2.3466 2.4728 -4.1507 20 6 -0.9983 2.4250 -4.4518 21 6 -0.0601 2.6043 -3.4527 22 6 1.0783 4.4660 -1.1114 23 6 -0.0714 5.4391 -0.8432 24 6 2.1604 4.6489 -0.0453 25 6 1.6716 4.7460 -2.4935 26 1 -0.3634 0.5310 0.8798 27 1 -0.3633 0.4964 -0.8998 28 1 -0.3633 -1.0274 0.0199 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7923 -0.0473 2.9788 32 1 2.4604 2.5591 -1.6779 33 1 -2.1388 3.0615 -0.8358 34 1 -3.8100 2.7398 -2.6153 35 1 -3.0796 2.3274 -4.9304 36 1 -0.6779 2.2458 -5.4675 37 1 0.9933 2.5665 -3.6879 38 1 -0.4941 5.2396 0.1416 39 1 0.3031 6.4622 -0.8769 40 1 -0.8424 5.3089 -1.6026 41 1 3.0257 4.0357 -0.2969 42 1 2.4572 5.6969 -0.0049 43 1 1.7692 4.3444 0.9254 44 1 0.9007 4.6157 -3.2531 45 1 2.0457 5.7693 -2.5279 46 1 2.4908 4.0527 -2.6846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:05 Heat of formation + Delta-G solvation = -5.164831 kcal Electronic energy + Delta-G solvation = -22945.787158 eV Core-core repulsion = 20026.922520 eV Total energy + Delta-G solvation = -2918.864638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01621 -38.64139 -36.64451 -33.97979 -32.48056 -31.83981 -31.46465 -28.53543 -28.18047 -27.85555 -25.76605 -24.34187 -23.14946 -22.10640 -21.18546 -19.78275 -18.64000 -17.30121 -16.88186 -16.41136 -15.99020 -15.94458 -15.35494 -14.88466 -14.76199 -14.65760 -14.40222 -14.13324 -13.74085 -13.45953 -13.36756 -13.15839 -13.05037 -12.93498 -12.78485 -12.68916 -12.63683 -12.45156 -12.24619 -12.02847 -11.82863 -11.71828 -11.59925 -11.44934 -11.28862 -11.10302 -10.76931 -10.44647 -9.59297 -9.33656 -8.87042 -8.06406 -6.20234 0.66697 0.71440 1.40301 1.42730 1.51356 2.42980 3.06799 3.19969 3.67491 3.94523 3.97187 4.08236 4.23486 4.31791 4.39241 4.49304 4.61675 4.63804 4.67807 4.74705 4.79063 4.86331 4.89102 4.90526 4.94899 4.96908 5.07443 5.12850 5.17268 5.23993 5.31540 5.35498 5.36439 5.38868 5.51835 5.56804 5.58300 5.69507 5.74800 5.77993 5.81320 5.99205 6.03592 6.31621 6.33430 6.57197 6.90084 7.14574 7.49425 8.96514 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.005995 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.748766 B = 4669.641104 C = 5230.588187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.235 3.765 4 H -0.019 1.019 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.674 5.674 14 C 0.139 3.861 15 H 0.045 0.955 16 C -0.056 4.056 17 C -0.133 4.133 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.104 4.104 22 C -0.081 4.081 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.138 4.138 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.024 0.976 30 H 0.057 0.943 31 H 0.259 0.741 32 H 0.334 0.666 33 H 0.113 0.887 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 8.210 -10.377 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.126 3.874 4 H -0.001 1.001 5 C -0.569 4.569 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.193 1.193 13 N -0.305 5.305 14 C 0.029 3.971 15 H 0.064 0.936 16 C -0.056 4.056 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.151 4.151 20 C -0.150 4.150 21 C -0.122 4.122 22 C -0.082 4.082 23 C -0.189 4.189 24 C -0.194 4.194 25 C -0.195 4.195 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.742 7.586 -10.401 16.145 hybrid contribution 1.625 0.292 1.278 2.088 sum -8.118 7.878 -9.123 14.533 Atomic orbital electron populations 1.21618 0.97238 0.99514 1.00053 1.21397 0.93639 0.99480 0.99499 1.18875 0.92656 0.90823 0.85014 1.00142 1.21750 0.92939 1.37542 1.04691 0.92628 1.25603 1.01745 0.95045 0.95721 1.70025 1.36194 1.39469 1.09710 0.85695 0.81334 0.77312 0.78108 1.20421 1.21351 1.19337 1.60736 1.10297 1.32289 1.27184 1.20530 0.91369 0.90399 0.94829 0.93641 1.19832 0.93486 0.97734 0.94586 1.21112 0.92728 1.01759 0.99581 1.21287 0.99818 1.00277 0.93090 1.21346 0.96098 1.00704 0.96936 1.21381 0.93446 1.00498 0.99659 1.21043 0.99846 0.98809 0.92489 1.20998 0.95957 0.95021 0.96201 1.21790 0.97365 0.98539 1.01159 1.21844 0.98672 1.01273 0.97579 1.21959 1.00694 1.01370 0.95507 0.95372 0.92577 0.94183 0.95669 0.92452 0.93154 0.84611 0.86850 0.84544 0.84214 0.84782 0.86493 0.93563 0.91722 0.92045 0.93154 0.91712 0.95159 0.91380 0.91848 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 9.34 71.98 0.67 -4.72 16 2 C -0.10 -5.02 5.45 30.59 0.17 -4.85 16 3 C 0.23 11.50 1.37 44.17 0.06 11.56 16 4 H -0.02 -1.05 6.90 -2.39 -0.02 -1.06 16 5 C -0.53 -28.08 7.69 25.60 0.20 -27.88 16 6 H 0.06 2.89 7.37 -2.91 -0.02 2.86 16 7 C 0.02 0.99 5.29 84.65 0.45 1.43 16 8 N -0.91 -52.37 11.29 21.45 0.24 -52.13 16 9 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.67 -27.19 4.82 -477.14 -2.30 -29.49 16 14 C 0.14 4.84 0.88 44.17 0.04 4.88 16 15 H 0.05 1.82 6.80 -2.39 -0.02 1.80 16 16 C -0.06 -1.70 2.92 -19.87 -0.06 -1.76 16 17 C -0.13 -3.71 8.73 22.27 0.19 -3.51 16 18 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 19 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 20 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 21 C -0.10 -2.98 7.03 22.27 0.16 -2.82 16 22 C -0.08 -2.43 0.54 -52.18 -0.03 -2.45 16 23 C -0.13 -3.38 8.13 71.98 0.59 -2.79 16 24 C -0.14 -4.68 7.60 71.98 0.55 -4.14 16 25 C -0.14 -3.68 7.13 71.98 0.51 -3.17 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 2.28 6.35 -2.39 -0.02 2.27 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 3.19 5.94 -2.39 -0.01 3.18 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.33 13.37 4.63 -89.69 -0.41 12.96 16 33 H 0.11 3.07 8.04 -2.91 -0.02 3.05 16 34 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.12 3.47 6.89 -2.91 -0.02 3.45 16 38 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.52 6.69 -2.39 -0.02 1.50 16 41 H 0.05 1.96 6.04 -2.39 -0.01 1.94 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.03 1.15 8.02 -2.39 -0.02 1.13 16 44 H 0.07 1.73 5.62 -2.39 -0.01 1.72 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.05 1.42 6.36 -2.38 -0.02 1.40 16 Total: -1.00 -58.01 344.32 4.66 -53.36 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.52 Total: 31.61 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 4.16 Total: -48.62 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.06 Total: -81.62 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -58.01 4.66 -53.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.192 kcal (2) G-P(sol) polarization free energy of solvation -58.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds