Wall clock time and date at job start Mon Mar 30 2020 01:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47439 * 2 1 4 4 H 1.08997 * 109.47085 * 182.59181 * 3 2 1 5 5 C 1.50703 * 109.47348 * 62.58612 * 3 2 1 6 6 H 1.08004 * 119.99590 * 245.41343 * 5 3 2 7 7 C 1.37874 * 119.99913 * 65.41007 * 5 3 2 8 8 N 1.31513 * 119.99938 * 9.01646 * 7 5 3 9 9 Si 1.86796 * 119.99683 * 189.01832 * 7 5 3 10 10 H 1.48507 * 109.46944 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47399 * 299.99789 * 9 7 5 12 12 H 1.48502 * 109.47503 * 59.99879 * 9 7 5 13 13 N 1.46901 * 109.46700 * 302.58729 * 3 2 1 14 14 C 1.46904 * 110.99780 * 245.31978 * 13 3 2 15 15 C 1.52994 * 109.47605 * 299.71459 * 14 13 3 16 16 C 1.53005 * 109.47247 * 305.00278 * 15 14 13 17 17 C 1.53006 * 109.46845 * 59.71547 * 14 13 3 18 18 C 1.53001 * 109.47283 * 62.28164 * 17 14 13 19 19 C 1.50707 * 109.47067 * 179.70952 * 14 13 3 20 20 C 1.38238 * 119.99744 * 359.73511 * 19 14 13 21 21 C 1.38236 * 119.99321 * 179.76072 * 20 19 14 22 22 C 1.38235 * 120.00255 * 0.50673 * 21 20 19 23 23 C 1.38232 * 119.99636 * 359.74469 * 22 21 20 24 24 C 1.38226 * 120.00360 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47204 * 303.77122 * 1 2 3 26 26 H 1.08999 * 109.46984 * 63.77000 * 1 2 3 27 27 H 1.09000 * 109.47440 * 183.77575 * 1 2 3 28 28 H 1.09004 * 109.47163 * 239.99314 * 2 1 3 29 29 H 1.09006 * 109.47104 * 119.99971 * 2 1 3 30 30 H 0.96996 * 120.00012 * 357.16372 * 8 7 5 31 31 H 1.00897 * 111.00184 * 121.37519 * 13 3 2 32 32 H 1.09001 * 109.46960 * 64.99888 * 15 14 13 33 33 H 1.09003 * 109.47466 * 185.00218 * 15 14 13 34 34 H 1.09003 * 109.47174 * 59.99120 * 16 15 14 35 35 H 1.08996 * 109.47632 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.46511 * 300.00128 * 16 15 14 37 37 H 1.08996 * 109.46770 * 182.27373 * 17 14 13 38 38 H 1.08990 * 109.47118 * 302.27816 * 17 14 13 39 39 H 1.08998 * 109.47252 * 185.89873 * 18 17 14 40 40 H 1.09009 * 109.46770 * 305.89409 * 18 17 14 41 41 H 1.08998 * 109.47123 * 65.88938 * 18 17 14 42 42 H 1.07998 * 119.99981 * 359.97438 * 20 19 14 43 43 H 1.08003 * 119.99231 * 180.22887 * 21 20 19 44 44 H 1.08001 * 119.99904 * 179.72582 * 22 21 20 45 45 H 1.08001 * 119.99488 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.99581 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1290 1.4427 -0.0465 5 6 1.5908 2.1342 1.2613 6 1 0.8966 2.9598 1.2064 7 6 2.0659 1.7130 2.4851 8 7 3.0401 0.8316 2.5444 9 14 1.3257 2.3945 4.0590 10 1 2.0065 1.7859 5.2301 11 1 1.5045 3.8682 4.0926 12 1 -0.1228 2.0705 4.1057 13 7 1.5000 2.1527 -1.1670 14 6 2.5733 2.5319 -2.0956 15 6 3.5629 3.4548 -1.3817 16 6 2.8120 4.6521 -0.7955 17 6 3.3022 1.2743 -2.5733 18 6 2.3254 0.3776 -3.3368 19 6 1.9816 3.2504 -3.2809 20 6 0.6157 3.4490 -3.3573 21 6 0.0735 4.1124 -4.4422 22 6 0.8960 4.5678 -5.4555 23 6 2.2613 4.3646 -5.3814 24 6 2.8041 3.7063 -4.2939 25 1 -0.3634 0.5713 0.8543 26 1 -0.3633 0.4542 -0.9218 27 1 -0.3634 -1.0254 0.0677 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3965 0.4470 1.7284 31 1 0.9653 2.9600 -0.8834 32 1 4.0564 2.9070 -0.5789 33 1 4.3095 3.8072 -2.0935 34 1 2.0654 4.2998 -0.0838 35 1 3.5170 5.3094 -0.2866 36 1 2.3186 5.1999 -1.5984 37 1 4.1240 1.5584 -3.2305 38 1 3.6954 0.7333 -1.7128 39 1 2.8153 -0.5636 -3.5862 40 1 1.4525 0.1792 -2.7148 41 1 2.0125 0.8785 -4.2529 42 1 -0.0274 3.0890 -2.5679 43 1 -0.9933 4.2708 -4.5001 44 1 0.4719 5.0822 -6.3052 45 1 2.9039 4.7200 -6.1734 46 1 3.8708 3.5472 -4.2363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:36 Heat of formation + Delta-G solvation = 9.476268 kcal Electronic energy + Delta-G solvation = -23189.732212 eV Core-core repulsion = 20271.502460 eV Total energy + Delta-G solvation = -2918.229752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92162 -37.44580 -34.52362 -31.82032 -31.45050 -30.72213 -30.00533 -29.45617 -26.01807 -25.01644 -23.65758 -22.34638 -21.93789 -21.45793 -19.76187 -18.23342 -17.35686 -16.45446 -15.40344 -14.66079 -14.58296 -14.22409 -13.85582 -13.79143 -13.51937 -13.27139 -12.85482 -12.73453 -12.55146 -12.30598 -12.20259 -12.13842 -11.57917 -11.22301 -11.09998 -11.04170 -10.82550 -10.78654 -10.50864 -10.34406 -10.22928 -10.17148 -10.11866 -9.85935 -9.80206 -9.55989 -8.65194 -8.63052 -8.34598 -8.19435 -7.28688 -6.33946 -4.05627 1.64447 1.68672 3.41491 3.44037 3.61233 4.07532 4.50916 4.93407 5.06186 5.18909 5.27146 5.35551 5.38072 5.40011 5.61438 5.71317 5.77252 5.84854 5.98393 5.99652 6.01084 6.22678 6.27161 6.29596 6.38013 6.40716 6.45441 6.46894 6.53081 6.62063 6.64078 6.69103 6.75694 6.84542 6.88824 6.92016 6.98824 7.06938 7.21782 7.28373 7.30289 7.53234 7.63393 7.93269 8.08999 8.50729 8.64215 8.88460 9.64588 11.02020 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.006037 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.687331 B = 4637.238289 C = 4905.610227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.203 3.797 4 H 0.017 0.983 5 C -0.602 4.602 6 H 0.049 0.951 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.059 2.941 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.288 1.288 13 N -0.668 5.668 14 C 0.155 3.845 15 C -0.139 4.139 16 C -0.152 4.152 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.043 4.043 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.053 0.947 30 H 0.271 0.729 31 H 0.336 0.664 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.134 0.866 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 4.740 -12.697 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.035 0.965 5 C -0.640 4.640 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.888 3.112 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.300 5.300 14 C 0.063 3.937 15 C -0.178 4.178 16 C -0.210 4.210 17 C -0.141 4.141 18 C -0.199 4.199 19 C -0.044 4.044 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.152 0.848 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.839 4.101 -11.362 12.219 hybrid contribution 0.343 0.836 -1.180 1.486 sum -1.496 4.937 -12.542 13.562 Atomic orbital electron populations 1.21453 0.97106 0.97863 1.01562 1.21582 0.95731 0.98773 0.98473 1.19241 0.93701 0.90669 0.86877 0.96534 1.22197 1.30685 1.18577 0.92588 0.93306 1.25564 0.94654 0.96030 1.01562 1.70799 1.22676 1.28499 1.32432 0.83679 0.75840 0.75613 0.76072 1.20983 1.21722 1.21485 1.60888 1.22076 1.28870 1.18160 1.19790 0.91137 0.92398 0.90398 1.22147 0.98349 0.97320 1.00029 1.21796 1.01133 0.97363 1.00662 1.21546 0.97134 0.95559 0.99814 1.21708 1.00609 0.97747 0.99859 1.19878 0.93511 0.95903 0.95100 1.21201 0.95199 0.97588 0.98181 1.21142 0.99391 0.99057 0.94685 1.21010 0.93871 1.01552 0.98982 1.20991 0.95145 1.00082 0.98148 1.20936 0.99502 0.99247 0.94227 0.92503 0.93458 0.96486 0.95424 0.92849 0.91767 0.84408 0.90877 0.93345 0.90457 0.93717 0.93909 0.93127 0.91340 0.94411 0.90447 0.93803 0.84834 0.86704 0.86977 0.86873 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.52 37.16 0.35 -2.18 16 2 C -0.11 -2.37 5.27 -26.74 -0.14 -2.51 16 3 C 0.20 4.51 0.77 -68.87 -0.05 4.46 16 4 H 0.02 0.42 4.10 -51.93 -0.21 0.20 16 5 C -0.60 -15.06 6.29 -34.44 -0.22 -15.28 16 6 H 0.05 1.24 6.94 -52.48 -0.36 0.87 16 7 C 0.03 0.73 5.19 -17.82 -0.09 0.63 16 8 N -0.91 -25.80 13.05 55.43 0.72 -25.08 16 9 Si 1.06 24.30 29.91 -169.99 -5.08 19.22 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.67 -12.56 3.27 -95.41 -0.31 -12.87 16 14 C 0.15 2.61 0.23 -132.75 -0.03 2.57 16 15 C -0.14 -2.44 4.51 -26.73 -0.12 -2.56 16 16 C -0.15 -2.67 9.27 37.16 0.34 -2.32 16 17 C -0.10 -1.70 4.34 -26.73 -0.12 -1.82 16 18 C -0.14 -2.26 8.90 37.16 0.33 -1.93 16 19 C -0.04 -0.67 2.49 -104.62 -0.26 -0.93 16 20 C -0.10 -1.56 9.14 -39.58 -0.36 -1.92 16 21 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 22 C -0.14 -1.68 10.05 -39.58 -0.40 -2.07 16 23 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 24 C -0.12 -1.69 8.68 -39.59 -0.34 -2.04 16 25 H 0.06 1.27 7.18 -51.93 -0.37 0.90 16 26 H 0.05 0.92 7.66 -51.93 -0.40 0.52 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.03 0.57 5.96 -51.93 -0.31 0.26 16 29 H 0.05 1.33 6.37 -51.93 -0.33 1.00 16 30 H 0.27 7.67 6.02 -40.82 -0.25 7.43 16 31 H 0.34 6.56 4.92 -39.29 -0.19 6.36 16 32 H 0.07 1.48 6.47 -51.93 -0.34 1.15 16 33 H 0.05 0.77 7.23 -51.93 -0.38 0.39 16 34 H 0.08 1.52 5.09 -51.93 -0.26 1.26 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.70 7.38 -51.93 -0.38 0.32 16 37 H 0.05 0.76 7.47 -51.93 -0.39 0.37 16 38 H 0.07 1.27 6.21 -51.93 -0.32 0.95 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.36 6.09 -51.92 -0.32 1.04 16 41 H 0.04 0.68 7.38 -51.93 -0.38 0.29 16 42 H 0.13 2.10 6.42 -52.49 -0.34 1.76 16 43 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 44 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 46 H 0.11 1.51 7.10 -52.48 -0.37 1.13 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -26.30 336.84 -8.73 -35.03 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.24 Total: 10.53 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: -1.90 Total: -31.91 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.41 Total: -37.95 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.30 -8.73 -35.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.506 kcal (2) G-P(sol) polarization free energy of solvation -26.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds