Wall clock time and date at job start Mon Mar 30 2020 01:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47439 * 2 1 4 4 H 1.08997 * 109.47085 * 182.59181 * 3 2 1 5 5 C 1.50703 * 109.47348 * 62.58612 * 3 2 1 6 6 H 1.08004 * 119.99590 * 245.41343 * 5 3 2 7 7 C 1.37874 * 119.99913 * 65.41007 * 5 3 2 8 8 N 1.31513 * 119.99938 * 9.01646 * 7 5 3 9 9 Si 1.86796 * 119.99683 * 189.01832 * 7 5 3 10 10 H 1.48507 * 109.46944 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47399 * 299.99789 * 9 7 5 12 12 H 1.48502 * 109.47503 * 59.99879 * 9 7 5 13 13 N 1.46901 * 109.46700 * 302.58729 * 3 2 1 14 14 C 1.46904 * 110.99780 * 245.31978 * 13 3 2 15 15 C 1.52994 * 109.47605 * 299.71459 * 14 13 3 16 16 C 1.53005 * 109.47247 * 305.00278 * 15 14 13 17 17 C 1.53006 * 109.46845 * 59.71547 * 14 13 3 18 18 C 1.53001 * 109.47283 * 62.28164 * 17 14 13 19 19 C 1.50707 * 109.47067 * 179.70952 * 14 13 3 20 20 C 1.38238 * 119.99744 * 359.73511 * 19 14 13 21 21 C 1.38236 * 119.99321 * 179.76072 * 20 19 14 22 22 C 1.38235 * 120.00255 * 0.50673 * 21 20 19 23 23 C 1.38232 * 119.99636 * 359.74469 * 22 21 20 24 24 C 1.38226 * 120.00360 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47204 * 303.77122 * 1 2 3 26 26 H 1.08999 * 109.46984 * 63.77000 * 1 2 3 27 27 H 1.09000 * 109.47440 * 183.77575 * 1 2 3 28 28 H 1.09004 * 109.47163 * 239.99314 * 2 1 3 29 29 H 1.09006 * 109.47104 * 119.99971 * 2 1 3 30 30 H 0.96996 * 120.00012 * 357.16372 * 8 7 5 31 31 H 1.00897 * 111.00184 * 121.37519 * 13 3 2 32 32 H 1.09001 * 109.46960 * 64.99888 * 15 14 13 33 33 H 1.09003 * 109.47466 * 185.00218 * 15 14 13 34 34 H 1.09003 * 109.47174 * 59.99120 * 16 15 14 35 35 H 1.08996 * 109.47632 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.46511 * 300.00128 * 16 15 14 37 37 H 1.08996 * 109.46770 * 182.27373 * 17 14 13 38 38 H 1.08990 * 109.47118 * 302.27816 * 17 14 13 39 39 H 1.08998 * 109.47252 * 185.89873 * 18 17 14 40 40 H 1.09009 * 109.46770 * 305.89409 * 18 17 14 41 41 H 1.08998 * 109.47123 * 65.88938 * 18 17 14 42 42 H 1.07998 * 119.99981 * 359.97438 * 20 19 14 43 43 H 1.08003 * 119.99231 * 180.22887 * 21 20 19 44 44 H 1.08001 * 119.99904 * 179.72582 * 22 21 20 45 45 H 1.08001 * 119.99488 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.99581 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1290 1.4427 -0.0465 5 6 1.5908 2.1342 1.2613 6 1 0.8966 2.9598 1.2064 7 6 2.0659 1.7130 2.4851 8 7 3.0401 0.8316 2.5444 9 14 1.3257 2.3945 4.0590 10 1 2.0065 1.7859 5.2301 11 1 1.5045 3.8682 4.0926 12 1 -0.1228 2.0705 4.1057 13 7 1.5000 2.1527 -1.1670 14 6 2.5733 2.5319 -2.0956 15 6 3.5629 3.4548 -1.3817 16 6 2.8120 4.6521 -0.7955 17 6 3.3022 1.2743 -2.5733 18 6 2.3254 0.3776 -3.3368 19 6 1.9816 3.2504 -3.2809 20 6 0.6157 3.4490 -3.3573 21 6 0.0735 4.1124 -4.4422 22 6 0.8960 4.5678 -5.4555 23 6 2.2613 4.3646 -5.3814 24 6 2.8041 3.7063 -4.2939 25 1 -0.3634 0.5713 0.8543 26 1 -0.3633 0.4542 -0.9218 27 1 -0.3634 -1.0254 0.0677 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3965 0.4470 1.7284 31 1 0.9653 2.9600 -0.8834 32 1 4.0564 2.9070 -0.5789 33 1 4.3095 3.8072 -2.0935 34 1 2.0654 4.2998 -0.0838 35 1 3.5170 5.3094 -0.2866 36 1 2.3186 5.1999 -1.5984 37 1 4.1240 1.5584 -3.2305 38 1 3.6954 0.7333 -1.7128 39 1 2.8153 -0.5636 -3.5862 40 1 1.4525 0.1792 -2.7148 41 1 2.0125 0.8785 -4.2529 42 1 -0.0274 3.0890 -2.5679 43 1 -0.9933 4.2708 -4.5001 44 1 0.4719 5.0822 -6.3052 45 1 2.9039 4.7200 -6.1734 46 1 3.8708 3.5472 -4.2363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:35 Heat of formation + Delta-G solvation = -1.828334 kcal Electronic energy + Delta-G solvation = -23190.222417 eV Core-core repulsion = 20271.502460 eV Total energy + Delta-G solvation = -2918.719957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19544 -38.76789 -36.22963 -33.42347 -33.11058 -31.89458 -31.15965 -30.94772 -27.65372 -26.58711 -25.50664 -23.57955 -23.00892 -22.85266 -21.42876 -19.72318 -19.00539 -17.84908 -16.69840 -16.15091 -15.81183 -15.60955 -15.45556 -15.26687 -15.14214 -14.49770 -14.45598 -14.21233 -13.96388 -13.80478 -13.58005 -13.25068 -13.23840 -12.85201 -12.64124 -12.48016 -12.42072 -12.12128 -11.99189 -11.87654 -11.82969 -11.74455 -11.62996 -11.49893 -11.42607 -11.09931 -10.56378 -10.21047 -9.67774 -9.44633 -8.92167 -8.44378 -6.16447 0.60500 0.65138 1.53749 1.59759 1.77242 2.60291 3.02658 3.30759 3.54364 3.79476 3.96767 4.19784 4.24674 4.28357 4.36453 4.41532 4.50023 4.55393 4.60284 4.62856 4.67357 4.78715 4.80538 4.87292 4.93622 5.04096 5.09904 5.11748 5.17906 5.18918 5.29211 5.30254 5.34724 5.40837 5.41433 5.49034 5.56525 5.68567 5.74052 5.77884 5.83333 5.88243 6.05750 6.20223 6.26882 6.64514 6.75023 6.99563 7.61031 8.90007 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.006037 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.687331 B = 4637.238289 C = 4905.610227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C 0.215 3.785 4 H -0.008 1.008 5 C -0.593 4.593 6 H 0.045 0.955 7 C -0.021 4.021 8 N -0.938 5.938 9 Si 1.098 2.902 10 H -0.292 1.292 11 H -0.277 1.277 12 H -0.275 1.275 13 N -0.657 5.657 14 C 0.158 3.842 15 C -0.135 4.135 16 C -0.143 4.143 17 C -0.102 4.102 18 C -0.132 4.132 19 C -0.056 4.056 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.021 0.979 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 6.133 -15.141 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C 0.106 3.894 4 H 0.009 0.991 5 C -0.632 4.632 6 H 0.063 0.937 7 C -0.220 4.220 8 N -0.576 5.576 9 Si 0.923 3.077 10 H -0.218 1.218 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.287 5.287 14 C 0.066 3.934 15 C -0.174 4.174 16 C -0.201 4.201 17 C -0.139 4.139 18 C -0.189 4.189 19 C -0.056 4.056 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.147 4.147 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.758 5.505 -13.828 15.137 hybrid contribution 0.629 0.451 -0.540 0.944 sum -2.129 5.956 -14.368 15.699 Atomic orbital electron populations 1.21332 0.95666 0.98681 1.01194 1.21477 0.96850 0.98321 0.97383 1.18956 0.92114 0.91017 0.87281 0.99086 1.22464 1.29304 1.17836 0.93585 0.93705 1.26675 0.94627 0.96048 1.04677 1.70898 1.24494 1.30393 1.31794 0.83154 0.75790 0.75774 0.73006 1.21838 1.20277 1.20049 1.60828 1.22596 1.28611 1.16697 1.19778 0.90364 0.92629 0.90609 1.22086 0.98866 0.97108 0.99367 1.21685 1.00511 0.97399 1.00461 1.21529 0.97872 0.95394 0.99139 1.21594 0.99609 0.98157 0.99564 1.19656 0.93900 0.97142 0.94900 1.21173 0.94958 0.98835 0.98880 1.21380 1.00643 0.98327 0.94156 1.21383 0.93758 1.00584 0.99299 1.21326 0.95779 0.98944 0.98065 1.21071 0.99773 0.99532 0.94370 0.94535 0.92195 0.94854 0.94295 0.96065 0.93046 0.84812 0.94494 0.91332 0.93043 0.93356 0.92442 0.91297 0.94132 0.93324 0.92300 0.92950 0.86248 0.84876 0.84103 0.84193 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 9.52 71.98 0.69 -3.92 16 2 C -0.10 -4.62 5.27 30.59 0.16 -4.46 16 3 C 0.22 9.90 0.77 44.17 0.03 9.94 16 4 H -0.01 -0.43 4.10 -2.39 -0.01 -0.44 16 5 C -0.59 -30.51 6.29 25.60 0.16 -30.34 16 6 H 0.04 2.31 6.94 -2.91 -0.02 2.29 16 7 C -0.02 -1.13 5.19 84.65 0.44 -0.69 16 8 N -0.94 -55.37 13.05 21.45 0.28 -55.09 16 9 Si 1.10 49.68 29.91 68.60 2.05 51.74 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.66 -25.03 3.27 -455.77 -1.49 -26.52 16 14 C 0.16 5.29 0.23 2.78 0.00 5.29 16 15 C -0.14 -4.77 4.51 30.59 0.14 -4.63 16 16 C -0.14 -5.00 9.27 71.98 0.67 -4.33 16 17 C -0.10 -3.34 4.34 30.60 0.13 -3.21 16 18 C -0.13 -4.06 8.90 71.98 0.64 -3.42 16 19 C -0.06 -1.61 2.49 -19.86 -0.05 -1.66 16 20 C -0.12 -3.42 9.14 22.27 0.20 -3.21 16 21 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 22 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 23 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 24 C -0.13 -3.25 8.68 22.27 0.19 -3.06 16 25 H 0.04 1.63 7.18 -2.39 -0.02 1.61 16 26 H 0.06 2.30 7.66 -2.39 -0.02 2.28 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.65 5.96 -2.38 -0.01 1.64 16 29 H 0.02 1.08 6.37 -2.38 -0.02 1.07 16 30 H 0.26 15.49 6.02 -92.71 -0.56 14.93 16 31 H 0.33 13.16 4.92 -89.70 -0.44 12.72 16 32 H 0.04 1.56 6.47 -2.39 -0.02 1.55 16 33 H 0.07 2.11 7.23 -2.39 -0.02 2.09 16 34 H 0.05 2.05 5.09 -2.39 -0.01 2.04 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.82 7.38 -2.39 -0.02 1.80 16 37 H 0.07 1.99 7.47 -2.39 -0.02 1.97 16 38 H 0.04 1.55 6.21 -2.39 -0.01 1.54 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 2.02 6.09 -2.38 -0.01 2.01 16 41 H 0.05 1.52 7.38 -2.39 -0.02 1.50 16 42 H 0.12 3.67 6.42 -2.91 -0.02 3.65 16 43 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.12 2.84 7.10 -2.91 -0.02 2.82 16 Total: -1.00 -57.90 336.84 5.65 -52.25 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.73 Total: 32.98 kcal Atomic # 6 Polarization: -59.43 SS G_CDS: 4.08 Total: -55.35 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.21 Total: -81.61 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.74 kcal Total: -57.90 5.65 -52.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.422 kcal (2) G-P(sol) polarization free energy of solvation -57.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds