Wall clock time and date at job start Mon Mar 30 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 H 1.09003 * 109.47074 * 54.69966 * 3 2 1 5 5 C 1.50701 * 109.46917 * 174.69914 * 3 2 1 6 6 H 1.07996 * 120.00170 * 120.00008 * 5 3 2 7 7 C 1.37874 * 119.99849 * 299.99792 * 5 3 2 8 8 N 1.31510 * 120.00346 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99960 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47083 * 119.99721 * 9 7 5 12 12 H 1.48493 * 109.47349 * 240.00188 * 9 7 5 13 13 N 1.46900 * 109.46794 * 294.69845 * 3 2 1 14 14 C 1.46907 * 110.99636 * 152.80051 * 13 3 2 15 15 H 1.08996 * 109.47073 * 331.78011 * 14 13 3 16 16 C 1.53000 * 109.46868 * 211.78330 * 14 13 3 17 17 C 1.52998 * 109.47456 * 64.84005 * 16 14 13 18 18 C 1.50699 * 109.46928 * 91.78191 * 14 13 3 19 19 C 1.38256 * 120.00216 * 29.08384 * 18 14 13 20 20 C 1.38212 * 119.99920 * 179.97438 * 19 18 14 21 21 C 1.38259 * 119.99970 * 359.97438 * 20 19 18 22 22 C 1.38204 * 120.00016 * 0.02562 * 21 20 19 23 23 C 1.50697 * 119.99722 * 179.97438 * 22 21 20 24 24 C 1.38217 * 119.99848 * 208.80121 * 18 14 13 25 25 C 1.50699 * 119.99980 * 0.02562 * 24 18 14 26 26 H 1.09000 * 109.47343 * 175.51373 * 1 2 3 27 27 H 1.08995 * 109.47436 * 295.51738 * 1 2 3 28 28 H 1.09007 * 109.46658 * 55.51885 * 1 2 3 29 29 H 1.08997 * 109.46742 * 119.99711 * 2 1 3 30 30 H 1.09001 * 109.47402 * 239.99634 * 2 1 3 31 31 H 0.97006 * 120.00518 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99749 * 276.75298 * 13 3 2 33 33 H 1.09000 * 109.47296 * 184.84451 * 16 14 13 34 34 H 1.09005 * 109.47154 * 304.84180 * 16 14 13 35 35 H 1.09006 * 109.46982 * 304.54614 * 17 16 14 36 36 H 1.09005 * 109.46693 * 64.53287 * 17 16 14 37 37 H 1.08991 * 109.47361 * 184.53885 * 17 16 14 38 38 H 1.08004 * 119.99864 * 359.97438 * 19 18 14 39 39 H 1.08004 * 119.99895 * 180.02562 * 20 19 18 40 40 H 1.08006 * 119.99421 * 180.02562 * 21 20 19 41 41 H 1.09005 * 109.47239 * 90.00592 * 23 22 21 42 42 H 1.09003 * 109.47323 * 209.99723 * 23 22 21 43 43 H 1.09002 * 109.47850 * 329.99785 * 23 22 21 44 44 H 1.09006 * 109.46844 * 89.99539 * 25 24 18 45 45 H 1.09000 * 109.47521 * 209.99489 * 25 24 18 46 46 H 1.09003 * 109.46929 * 330.00149 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9830 0.8387 5 6 3.5413 1.4445 0.1313 6 1 4.1505 1.8876 -0.6426 7 6 4.1371 0.8805 1.2394 8 7 3.3954 0.3404 2.1815 9 14 5.9981 0.8835 1.4025 10 1 6.5978 1.5464 0.2166 11 1 6.3860 1.6212 2.6315 12 1 6.4897 -0.5150 1.4885 13 7 1.6576 2.0970 -1.2583 14 6 1.5271 3.5491 -1.0779 15 1 1.2473 3.7634 -0.0465 16 6 0.4482 4.0852 -2.0209 17 6 -0.9099 3.5012 -1.6266 18 6 2.8429 4.2142 -1.3900 19 6 3.7081 3.6405 -2.3031 20 6 4.9146 4.2509 -2.5897 21 6 5.2559 5.4355 -1.9638 22 6 4.3910 6.0090 -1.0511 23 6 4.7634 7.2998 -0.3685 24 6 3.1821 5.4010 -0.7679 25 6 2.2364 6.0293 0.2230 26 1 -0.3634 -1.0245 -0.0804 27 1 -0.3634 0.4427 0.9274 28 1 -0.3633 0.5819 -0.8472 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.8146 -0.0567 2.9610 32 1 2.3154 1.8815 -1.9924 33 1 0.4108 5.1722 -1.9497 34 1 0.6844 3.7962 -3.0450 35 1 -0.8493 2.4129 -1.6198 36 1 -1.1832 3.8560 -0.6328 37 1 -1.6646 3.8187 -2.3460 38 1 3.4412 2.7154 -2.7923 39 1 5.5903 3.8029 -3.3033 40 1 6.1986 5.9126 -2.1882 41 1 4.4049 8.1411 -0.9616 42 1 4.3071 7.3324 0.6210 43 1 5.8474 7.3598 -0.2708 44 1 2.4556 5.6541 1.2227 45 1 2.3594 7.1123 0.2064 46 1 1.2102 5.7761 -0.0432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:44 Heat of formation + Delta-G solvation = -11.606186 kcal Electronic energy + Delta-G solvation = -22755.892281 eV Core-core repulsion = 19836.748325 eV Total energy + Delta-G solvation = -2919.143956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94937 -38.23085 -35.79686 -34.23199 -33.56993 -32.54400 -31.66069 -28.71114 -27.91515 -27.18673 -26.06199 -24.47182 -22.74204 -21.91867 -21.15047 -20.60206 -18.62259 -17.17323 -17.07265 -16.51041 -15.89689 -15.45331 -15.34942 -15.14310 -14.94655 -14.67498 -14.35472 -13.79611 -13.62904 -13.44656 -13.40006 -13.32772 -13.11059 -13.03544 -12.91318 -12.75242 -12.63681 -12.45196 -12.43885 -12.15547 -12.01258 -11.72535 -11.68998 -11.43387 -11.40010 -11.06711 -10.86965 -10.41239 -9.31338 -9.29970 -8.98776 -8.00803 -6.17990 0.57924 0.60553 1.31517 1.35772 1.44865 2.40828 2.92596 3.20011 3.73043 3.85552 4.01038 4.11327 4.21494 4.36793 4.38649 4.52990 4.57253 4.63975 4.64978 4.78869 4.80193 4.82758 4.85715 4.87454 4.94077 4.96199 5.01031 5.06716 5.18087 5.24341 5.25290 5.36583 5.39848 5.44994 5.47637 5.59932 5.66681 5.69632 5.71290 5.76057 5.84570 5.89711 6.18550 6.27129 6.29208 6.48774 6.90619 7.09354 7.51945 8.96265 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.009095 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.041834 B = 3078.011705 C = 4582.800991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.229 3.771 4 H -0.005 1.005 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.282 1.282 13 N -0.669 5.669 14 C 0.134 3.866 15 H 0.058 0.942 16 C -0.095 4.095 17 C -0.139 4.139 18 C -0.090 4.090 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.101 4.101 23 C -0.109 4.109 24 C -0.102 4.102 25 C -0.112 4.112 26 H 0.042 0.958 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.257 0.743 32 H 0.330 0.670 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 11.625 -7.710 14.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.120 3.880 4 H 0.013 0.987 5 C -0.576 4.576 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.760 3.240 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.208 1.208 13 N -0.299 5.299 14 C 0.023 3.977 15 H 0.076 0.924 16 C -0.133 4.133 17 C -0.197 4.197 18 C -0.091 4.091 19 C -0.145 4.145 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.101 4.101 23 C -0.165 4.165 24 C -0.103 4.103 25 C -0.168 4.168 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.150 0.850 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.632 11.394 -7.455 13.868 hybrid contribution 2.262 -0.353 0.637 2.376 sum -0.370 11.041 -6.818 12.982 Atomic orbital electron populations 1.21604 0.96462 0.99807 1.00492 1.21368 0.94403 0.98641 0.99816 1.18915 0.91591 0.91232 0.86288 0.98666 1.22299 0.94089 1.36158 1.05044 0.92301 1.25515 1.00709 0.95495 0.96050 1.70007 1.35629 1.39830 1.09866 0.85890 0.83001 0.77439 0.77650 1.19718 1.21373 1.20821 1.61023 1.53220 1.06918 1.08787 1.20534 0.90837 0.87764 0.98551 0.92404 1.21421 0.94259 0.99156 0.98471 1.21650 0.95748 1.01835 1.00418 1.20591 0.97748 0.94894 0.95901 1.20945 0.95103 0.99531 0.98930 1.21256 0.96638 0.96300 1.00874 1.21183 1.00137 0.96447 0.97887 1.20083 0.93882 0.98321 0.97782 1.20811 1.02189 0.93331 1.00178 1.19860 0.96180 0.95424 0.98805 1.20834 0.98123 1.01129 0.96724 0.93924 0.95326 0.91749 0.92331 0.95508 0.93348 0.85005 0.91589 0.92223 0.92448 0.93859 0.91866 0.86640 0.85168 0.84541 0.89680 0.91333 0.91002 0.92656 0.89446 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.85 71.98 0.71 -4.35 16 2 C -0.10 -4.96 5.45 30.59 0.17 -4.79 16 3 C 0.23 11.18 1.98 44.17 0.09 11.26 16 4 H 0.00 -0.26 7.32 -2.39 -0.02 -0.27 16 5 C -0.54 -28.70 7.98 25.60 0.20 -28.49 16 6 H 0.06 3.14 5.67 -2.91 -0.02 3.12 16 7 C 0.02 1.18 5.29 84.65 0.45 1.63 16 8 N -0.91 -52.75 11.29 21.45 0.24 -52.51 16 9 Si 0.93 44.79 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 13 N -0.67 -26.93 4.80 -477.14 -2.29 -29.22 16 14 C 0.13 4.84 1.55 44.17 0.07 4.91 16 15 H 0.06 2.34 5.90 -2.39 -0.01 2.33 16 16 C -0.09 -2.77 5.40 30.59 0.17 -2.61 16 17 C -0.14 -3.83 9.85 71.98 0.71 -3.12 16 18 C -0.09 -3.25 4.38 -19.87 -0.09 -3.34 16 19 C -0.13 -4.54 7.35 22.27 0.16 -4.37 16 20 C -0.13 -4.30 10.05 22.27 0.22 -4.07 16 21 C -0.14 -4.15 9.70 22.27 0.22 -3.94 16 22 C -0.10 -3.04 5.88 -19.87 -0.12 -3.16 16 23 C -0.11 -2.42 9.19 71.24 0.65 -1.77 16 24 C -0.10 -3.41 5.88 -19.87 -0.12 -3.52 16 25 C -0.11 -3.18 8.37 71.24 0.60 -2.58 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 2.41 6.31 -2.38 -0.02 2.39 16 29 H 0.06 3.19 5.94 -2.39 -0.01 3.18 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 32 H 0.33 13.33 5.41 -89.69 -0.49 12.85 16 33 H 0.07 1.74 7.40 -2.39 -0.02 1.73 16 34 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.06 1.77 6.29 -2.38 -0.01 1.76 16 36 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 4.11 5.99 -2.91 -0.02 4.09 16 39 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.07 1.49 6.72 -2.39 -0.02 1.48 16 43 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 44 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.09 1.96 6.72 -2.39 -0.02 1.94 16 46 H 0.07 1.92 5.82 -2.39 -0.01 1.91 16 Total: -1.00 -60.01 348.24 4.54 -55.46 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.47 Total: 31.76 kcal Atomic # 6 Polarization: -56.40 SS G_CDS: 4.09 Total: -52.31 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.05 Total: -81.73 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -60.01 4.54 -55.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.857 kcal (2) G-P(sol) polarization free energy of solvation -60.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds