Wall clock time and date at job start Mon Mar 30 2020 01:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 H 1.08994 * 109.47162 * 306.09122 * 3 2 1 5 5 N 1.46901 * 109.47230 * 66.09334 * 3 2 1 6 6 C 1.46907 * 110.99637 * 262.71601 * 5 3 2 7 7 H 1.08995 * 109.46849 * 20.15609 * 6 5 3 8 8 C 1.50699 * 109.46948 * 140.15371 * 6 5 3 9 9 H 1.08006 * 120.00298 * 0.02562 * 8 6 5 10 10 C 1.37873 * 120.00186 * 179.97438 * 8 6 5 11 11 N 1.31518 * 119.99748 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00440 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47267 * 89.99993 * 12 10 8 14 14 H 1.48498 * 109.47128 * 210.00254 * 12 10 8 15 15 H 1.48505 * 109.46855 * 330.00338 * 12 10 8 16 16 C 1.52997 * 109.47117 * 260.15300 * 6 5 3 17 17 C 1.53000 * 109.47192 * 64.94625 * 16 6 5 18 18 C 1.50697 * 109.46792 * 186.08866 * 3 2 1 19 19 C 1.38255 * 120.00284 * 264.99503 * 18 3 2 20 20 C 1.38213 * 120.00289 * 179.97438 * 19 18 3 21 21 C 1.50698 * 120.00179 * 180.02562 * 20 19 18 22 22 C 1.38258 * 119.99730 * 0.02562 * 20 19 18 23 23 C 1.38206 * 120.00253 * 0.02562 * 22 20 19 24 24 C 1.38217 * 120.00002 * 84.72824 * 18 3 2 25 25 C 1.50701 * 119.99773 * 359.97438 * 24 18 3 26 26 H 1.08996 * 109.46825 * 180.31789 * 1 2 3 27 27 H 1.09004 * 109.47221 * 300.31839 * 1 2 3 28 28 H 1.09000 * 109.46888 * 60.32085 * 1 2 3 29 29 H 1.08997 * 109.47436 * 240.00075 * 2 1 3 30 30 H 1.09001 * 109.47189 * 119.99786 * 2 1 3 31 31 H 1.00901 * 111.00529 * 138.76501 * 5 3 2 32 32 H 0.96999 * 120.00203 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.47378 * 304.94678 * 16 6 5 34 34 H 1.08999 * 109.47160 * 184.94776 * 16 6 5 35 35 H 1.08998 * 109.47469 * 177.18686 * 17 16 6 36 36 H 1.09005 * 109.47193 * 297.18898 * 17 16 6 37 37 H 1.09001 * 109.47142 * 57.18183 * 17 16 6 38 38 H 1.07996 * 120.00039 * 0.02562 * 19 18 3 39 39 H 1.08996 * 109.47343 * 89.99893 * 21 20 19 40 40 H 1.09000 * 109.46738 * 210.00161 * 21 20 19 41 41 H 1.09001 * 109.46731 * 329.99550 * 21 20 19 42 42 H 1.08007 * 120.00135 * 180.02562 * 22 20 19 43 43 H 1.08008 * 120.00216 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.47143 * 90.00350 * 25 24 18 45 45 H 1.08996 * 109.46790 * 209.99646 * 25 24 18 46 46 H 1.09000 * 109.47203 * 330.00105 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5903 1.9868 -0.8304 5 7 1.6740 2.0913 1.2662 6 6 0.4470 2.8850 1.1155 7 1 -0.1020 2.5423 0.2386 8 6 -0.4121 2.7193 2.3425 9 1 -0.0798 2.0880 3.1533 10 6 -1.6220 3.3746 2.4305 11 7 -2.0265 4.1439 1.4434 12 14 -2.6867 3.1699 3.9516 13 1 -2.3319 4.2121 4.9482 14 1 -4.1169 3.3095 3.5772 15 1 -2.4577 1.8252 4.5388 16 6 0.8122 4.3609 0.9441 17 6 1.5797 4.5475 -0.3662 18 6 3.5394 1.4452 -0.1507 19 6 4.3467 1.5087 0.9699 20 6 5.7219 1.5106 0.8317 21 6 6.6019 1.5792 2.0531 22 6 6.2902 1.4496 -0.4272 23 6 5.4832 1.3872 -1.5475 24 6 4.1076 1.3787 -1.4089 25 6 3.2277 1.3028 -2.6300 26 1 -0.3633 -1.0276 0.0057 27 1 -0.3634 0.5188 0.8871 28 1 -0.3633 0.5088 -0.8929 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4319 2.6596 1.6136 32 1 -2.8779 4.6046 1.5051 33 1 1.4358 4.6803 1.7791 34 1 -0.0981 4.9600 0.9205 35 1 1.7963 5.6056 -0.5129 36 1 2.5142 3.9879 -0.3228 37 1 0.9756 4.1817 -1.1965 38 1 3.9028 1.5559 1.9532 39 1 6.8208 0.5695 2.4004 40 1 7.5331 2.0869 1.8019 41 1 6.0882 2.1309 2.8404 42 1 7.3649 1.4507 -0.5353 43 1 5.9272 1.3391 -2.5309 44 1 3.0075 2.3105 -2.9823 45 1 3.7421 0.7480 -3.4146 46 1 2.2971 0.7952 -2.3763 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:46 Heat of formation + Delta-G solvation = 0.038257 kcal Electronic energy + Delta-G solvation = -22488.239384 eV Core-core repulsion = 19569.600368 eV Total energy + Delta-G solvation = -2918.639015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78804 -36.98561 -34.25870 -33.17940 -31.71209 -30.78029 -29.59545 -28.95676 -26.86768 -24.97187 -24.42207 -22.66623 -22.01137 -20.63453 -19.76320 -19.19379 -16.32601 -15.88425 -15.64163 -14.87071 -14.60848 -14.23786 -13.98735 -13.70942 -13.32271 -13.23052 -13.03333 -12.64318 -12.50059 -12.48655 -12.30117 -11.98562 -11.76232 -11.67482 -11.35633 -11.23833 -11.19633 -10.86541 -10.73802 -10.59952 -10.58532 -10.30661 -10.10320 -9.86212 -9.66429 -9.63526 -8.96507 -8.47719 -8.29103 -8.13685 -7.15259 -5.93947 -3.96513 1.54999 1.63997 3.34532 3.41421 3.45682 3.93401 4.47225 4.96256 4.97132 5.06014 5.22429 5.29170 5.33756 5.36047 5.59634 5.66229 5.68975 5.75092 5.82277 5.85424 5.91596 5.97731 6.03128 6.13067 6.16607 6.20539 6.32554 6.37111 6.43765 6.44401 6.56880 6.62376 6.67081 6.81401 6.84530 6.86361 6.96911 7.02830 7.26115 7.27397 7.33107 7.48013 7.80263 7.95954 8.36622 8.62765 8.65900 9.11780 9.68381 11.11908 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.005269 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.163265 B = 5313.229467 C = 5573.252867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C 0.124 3.876 4 H 0.057 0.943 5 N -0.677 5.677 6 C 0.217 3.783 7 H 0.036 0.964 8 C -0.487 4.487 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.274 1.274 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.072 4.072 19 C -0.107 4.107 20 C -0.095 4.095 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.089 4.089 25 C -0.119 4.119 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.325 0.675 32 H 0.258 0.742 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.042 0.958 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.369 -4.957 -5.351 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.136 4.136 3 C 0.013 3.987 4 H 0.075 0.925 5 N -0.308 5.308 6 C 0.110 3.890 7 H 0.054 0.946 8 C -0.526 4.526 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.721 3.279 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.199 1.199 16 C -0.188 4.188 17 C -0.206 4.206 18 C -0.073 4.073 19 C -0.125 4.125 20 C -0.095 4.095 21 C -0.168 4.168 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.090 4.090 25 C -0.175 4.175 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.151 0.849 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.862 -5.400 -5.148 14.870 hybrid contribution -0.217 0.827 0.185 0.875 sum 12.645 -4.574 -4.963 14.334 Atomic orbital electron populations 1.21864 0.95163 1.00230 1.03919 1.21457 0.96574 0.95236 1.00314 1.20618 0.88129 0.96162 0.93747 0.92519 1.60980 1.07473 1.37547 1.24822 1.19342 0.85739 0.86636 0.97299 0.94606 1.21209 1.01851 1.26637 1.02943 0.91983 1.24943 0.97821 0.95525 0.96236 1.69872 1.21329 1.31019 1.31473 0.86588 0.79527 0.78434 0.83363 1.20981 1.21529 1.19943 1.22253 1.00634 1.02892 0.93033 1.21903 0.99398 0.99153 1.00127 1.20211 0.96511 0.98186 0.92349 1.21032 0.92312 0.99860 0.99312 1.19873 0.94197 1.00556 0.94842 1.20755 0.98549 1.01968 0.95553 1.20888 0.99091 1.02551 0.92219 1.20898 0.93025 1.01764 0.98202 1.19739 0.93848 1.00685 0.94683 1.20863 0.99460 1.02226 0.94971 0.94455 0.88860 0.94003 0.93628 0.91971 0.85616 0.93188 0.94839 0.88280 0.94868 0.94557 0.93928 0.84901 0.91528 0.92045 0.91441 0.86790 0.86671 0.91381 0.92044 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.79 37.16 0.33 -2.53 16 2 C -0.10 -1.67 5.32 -26.73 -0.14 -1.81 16 3 C 0.12 2.19 0.65 -68.86 -0.04 2.15 16 4 H 0.06 1.08 5.18 -51.93 -0.27 0.81 16 5 N -0.68 -13.71 5.26 -102.17 -0.54 -14.25 16 6 C 0.22 5.15 1.06 -68.86 -0.07 5.07 16 7 H 0.04 0.93 6.17 -51.93 -0.32 0.61 16 8 C -0.49 -12.94 8.09 -34.44 -0.28 -13.22 16 9 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 10 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 11 N -0.90 -25.04 11.29 55.43 0.63 -24.41 16 12 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 16 C -0.15 -3.45 5.10 -26.73 -0.14 -3.59 16 17 C -0.15 -2.95 8.74 37.16 0.32 -2.62 16 18 C -0.07 -1.15 4.48 -104.62 -0.47 -1.62 16 19 C -0.11 -1.65 8.45 -39.58 -0.33 -1.98 16 20 C -0.09 -1.27 5.88 -104.62 -0.62 -1.89 16 21 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 22 C -0.13 -1.64 9.70 -39.59 -0.38 -2.02 16 23 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 24 C -0.09 -1.29 5.88 -104.62 -0.62 -1.90 16 25 C -0.12 -1.51 9.22 36.01 0.33 -1.18 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.05 5.91 -51.93 -0.31 1.74 16 28 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.05 0.70 7.03 -51.93 -0.36 0.33 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.33 6.43 5.83 -39.29 -0.23 6.20 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 34 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.68 6.40 -51.93 -0.33 0.35 16 37 H 0.04 0.85 8.01 -51.93 -0.42 0.43 16 38 H 0.13 2.10 6.73 -52.49 -0.35 1.74 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 46 H 0.07 0.98 5.48 -51.93 -0.28 0.70 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -27.22 349.82 -9.68 -36.89 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.79 Total: 8.80 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -2.23 Total: -28.53 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.09 Total: -38.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.22 -9.68 -36.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.930 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds