Wall clock time and date at job start Mon Mar 30 2020 01:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 H 1.08994 * 109.47162 * 306.09122 * 3 2 1 5 5 N 1.46901 * 109.47230 * 66.09334 * 3 2 1 6 6 C 1.46907 * 110.99637 * 262.71601 * 5 3 2 7 7 H 1.08995 * 109.46849 * 20.15609 * 6 5 3 8 8 C 1.50699 * 109.46948 * 140.15371 * 6 5 3 9 9 H 1.08006 * 120.00298 * 0.02562 * 8 6 5 10 10 C 1.37873 * 120.00186 * 179.97438 * 8 6 5 11 11 N 1.31518 * 119.99748 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00440 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47267 * 89.99993 * 12 10 8 14 14 H 1.48498 * 109.47128 * 210.00254 * 12 10 8 15 15 H 1.48505 * 109.46855 * 330.00338 * 12 10 8 16 16 C 1.52997 * 109.47117 * 260.15300 * 6 5 3 17 17 C 1.53000 * 109.47192 * 64.94625 * 16 6 5 18 18 C 1.50697 * 109.46792 * 186.08866 * 3 2 1 19 19 C 1.38255 * 120.00284 * 264.99503 * 18 3 2 20 20 C 1.38213 * 120.00289 * 179.97438 * 19 18 3 21 21 C 1.50698 * 120.00179 * 180.02562 * 20 19 18 22 22 C 1.38258 * 119.99730 * 0.02562 * 20 19 18 23 23 C 1.38206 * 120.00253 * 0.02562 * 22 20 19 24 24 C 1.38217 * 120.00002 * 84.72824 * 18 3 2 25 25 C 1.50701 * 119.99773 * 359.97438 * 24 18 3 26 26 H 1.08996 * 109.46825 * 180.31789 * 1 2 3 27 27 H 1.09004 * 109.47221 * 300.31839 * 1 2 3 28 28 H 1.09000 * 109.46888 * 60.32085 * 1 2 3 29 29 H 1.08997 * 109.47436 * 240.00075 * 2 1 3 30 30 H 1.09001 * 109.47189 * 119.99786 * 2 1 3 31 31 H 1.00901 * 111.00529 * 138.76501 * 5 3 2 32 32 H 0.96999 * 120.00203 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.47378 * 304.94678 * 16 6 5 34 34 H 1.08999 * 109.47160 * 184.94776 * 16 6 5 35 35 H 1.08998 * 109.47469 * 177.18686 * 17 16 6 36 36 H 1.09005 * 109.47193 * 297.18898 * 17 16 6 37 37 H 1.09001 * 109.47142 * 57.18183 * 17 16 6 38 38 H 1.07996 * 120.00039 * 0.02562 * 19 18 3 39 39 H 1.08996 * 109.47343 * 89.99893 * 21 20 19 40 40 H 1.09000 * 109.46738 * 210.00161 * 21 20 19 41 41 H 1.09001 * 109.46731 * 329.99550 * 21 20 19 42 42 H 1.08007 * 120.00135 * 180.02562 * 22 20 19 43 43 H 1.08008 * 120.00216 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.47143 * 90.00350 * 25 24 18 45 45 H 1.08996 * 109.46790 * 209.99646 * 25 24 18 46 46 H 1.09000 * 109.47203 * 330.00105 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5903 1.9868 -0.8304 5 7 1.6740 2.0913 1.2662 6 6 0.4470 2.8850 1.1155 7 1 -0.1020 2.5423 0.2386 8 6 -0.4121 2.7193 2.3425 9 1 -0.0798 2.0880 3.1533 10 6 -1.6220 3.3746 2.4305 11 7 -2.0265 4.1439 1.4434 12 14 -2.6867 3.1699 3.9516 13 1 -2.3319 4.2121 4.9482 14 1 -4.1169 3.3095 3.5772 15 1 -2.4577 1.8252 4.5388 16 6 0.8122 4.3609 0.9441 17 6 1.5797 4.5475 -0.3662 18 6 3.5394 1.4452 -0.1507 19 6 4.3467 1.5087 0.9699 20 6 5.7219 1.5106 0.8317 21 6 6.6019 1.5792 2.0531 22 6 6.2902 1.4496 -0.4272 23 6 5.4832 1.3872 -1.5475 24 6 4.1076 1.3787 -1.4089 25 6 3.2277 1.3028 -2.6300 26 1 -0.3633 -1.0276 0.0057 27 1 -0.3634 0.5188 0.8871 28 1 -0.3633 0.5088 -0.8929 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4319 2.6596 1.6136 32 1 -2.8779 4.6046 1.5051 33 1 1.4358 4.6803 1.7791 34 1 -0.0981 4.9600 0.9205 35 1 1.7963 5.6056 -0.5129 36 1 2.5142 3.9879 -0.3228 37 1 0.9756 4.1817 -1.1965 38 1 3.9028 1.5559 1.9532 39 1 6.8208 0.5695 2.4004 40 1 7.5331 2.0869 1.8019 41 1 6.0882 2.1309 2.8404 42 1 7.3649 1.4507 -0.5353 43 1 5.9272 1.3391 -2.5309 44 1 3.0075 2.3105 -2.9823 45 1 3.7421 0.7480 -3.4146 46 1 2.2971 0.7952 -2.3763 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:46 Heat of formation + Delta-G solvation = -12.683806 kcal Electronic energy + Delta-G solvation = -22488.791054 eV Core-core repulsion = 19569.600368 eV Total energy + Delta-G solvation = -2919.190685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95458 -38.50733 -35.75966 -34.44773 -33.58927 -32.08916 -31.05960 -30.01223 -28.61091 -26.43461 -25.51380 -24.47200 -23.25329 -21.96568 -21.38224 -20.59861 -18.26069 -17.22447 -16.94891 -16.43878 -16.05156 -15.46657 -15.30012 -15.12843 -14.84155 -14.70439 -14.12461 -14.05167 -13.86709 -13.66882 -13.57669 -13.43002 -13.14547 -13.08795 -12.73734 -12.72273 -12.66277 -12.48988 -12.33041 -12.08919 -11.89436 -11.87146 -11.79222 -11.57132 -11.40439 -11.24589 -10.85694 -10.36547 -9.58397 -9.20529 -8.84016 -8.01702 -6.10633 0.49639 0.56596 1.42720 1.44444 1.54212 2.47530 2.87410 3.24729 3.66745 3.83004 4.01510 4.09092 4.23634 4.34712 4.39868 4.42972 4.45587 4.50960 4.54178 4.69570 4.73645 4.76106 4.81070 4.83010 4.87750 4.96451 4.98714 5.05368 5.10337 5.14995 5.18128 5.21249 5.30948 5.36746 5.42896 5.46961 5.56022 5.63658 5.72994 5.77880 5.78547 5.85605 5.95157 6.23046 6.41889 6.77996 6.93830 7.03950 7.58104 9.02064 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.005269 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.163265 B = 5313.229467 C = 5573.252867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C 0.131 3.869 4 H 0.043 0.957 5 N -0.678 5.678 6 C 0.230 3.770 7 H 0.010 0.990 8 C -0.499 4.499 9 H 0.049 0.951 10 C 0.011 3.989 11 N -0.920 5.920 12 Si 0.949 3.051 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.144 4.144 17 C -0.133 4.133 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.099 4.099 21 C -0.111 4.111 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.118 4.118 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.327 0.673 32 H 0.258 0.742 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.649 -5.567 -6.077 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C 0.021 3.979 4 H 0.061 0.939 5 N -0.309 5.309 6 C 0.122 3.878 7 H 0.028 0.972 8 C -0.538 4.538 9 H 0.068 0.932 10 C -0.186 4.186 11 N -0.561 5.561 12 Si 0.776 3.224 13 H -0.205 1.205 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.183 4.183 17 C -0.191 4.191 18 C -0.091 4.091 19 C -0.143 4.143 20 C -0.099 4.099 21 C -0.167 4.167 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.100 4.100 25 C -0.174 4.174 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.154 -6.018 -5.871 17.330 hybrid contribution -0.857 0.979 0.394 1.360 sum 14.297 -5.039 -5.477 16.118 Atomic orbital electron populations 1.21756 0.96337 1.00768 1.01665 1.21415 0.95364 0.95177 1.01032 1.20487 0.89945 0.95750 0.91677 0.93904 1.60852 1.06478 1.36801 1.26756 1.19016 0.86578 0.87279 0.94963 0.97208 1.21463 1.02644 1.26173 1.03532 0.93239 1.25593 0.98968 0.95422 0.98667 1.69996 1.21548 1.31689 1.32901 0.85695 0.77968 0.78324 0.80411 1.20546 1.21273 1.19757 1.22095 0.99561 1.01892 0.94784 1.21724 0.99117 1.00377 0.97851 1.20053 0.95021 1.00458 0.93575 1.21025 0.93508 1.01285 0.98526 1.20174 0.93594 0.99673 0.96465 1.20797 0.98753 1.02805 0.94349 1.21276 1.00673 1.00981 0.91584 1.21243 0.92329 1.00459 0.99735 1.19942 0.94972 1.00746 0.94340 1.20874 0.99008 1.02420 0.95105 0.92477 0.92742 0.94515 0.91362 0.92570 0.85378 0.93322 0.95257 0.91366 0.93223 0.93470 0.94397 0.86328 0.90511 0.90123 0.91886 0.83859 0.83933 0.91501 0.89594 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 8.79 71.98 0.63 -4.94 16 2 C -0.09 -3.14 5.32 30.60 0.16 -2.98 16 3 C 0.13 4.71 0.65 44.17 0.03 4.74 16 4 H 0.04 1.66 5.18 -2.39 -0.01 1.65 16 5 N -0.68 -28.27 5.26 -477.16 -2.51 -30.78 16 6 C 0.23 11.29 1.06 44.17 0.05 11.34 16 7 H 0.01 0.55 6.17 -2.39 -0.01 0.53 16 8 C -0.50 -27.40 8.09 25.60 0.21 -27.19 16 9 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.01 0.62 5.29 84.65 0.45 1.07 16 11 N -0.92 -52.83 11.29 21.45 0.24 -52.59 16 12 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 16 C -0.14 -6.84 5.10 30.59 0.16 -6.69 16 17 C -0.13 -5.28 8.74 71.98 0.63 -4.66 16 18 C -0.09 -2.83 4.48 -19.87 -0.09 -2.92 16 19 C -0.13 -3.76 8.45 22.27 0.19 -3.58 16 20 C -0.10 -2.45 5.88 -19.87 -0.12 -2.56 16 21 C -0.11 -2.10 10.01 71.24 0.71 -1.38 16 22 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 23 C -0.12 -2.70 9.70 22.27 0.22 -2.49 16 24 C -0.10 -2.67 5.88 -19.86 -0.12 -2.79 16 25 C -0.12 -2.78 9.22 71.24 0.66 -2.12 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 2.48 5.91 -2.38 -0.01 2.47 16 28 H 0.04 1.38 8.11 -2.39 -0.02 1.36 16 29 H 0.07 2.03 7.03 -2.39 -0.02 2.01 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.33 13.29 5.83 -89.69 -0.52 12.76 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 34 H 0.07 3.70 5.95 -2.39 -0.01 3.69 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.75 6.40 -2.38 -0.02 1.73 16 37 H 0.04 1.51 8.01 -2.39 -0.02 1.49 16 38 H 0.12 3.81 6.73 -2.91 -0.02 3.79 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 41 H 0.06 1.24 8.09 -2.39 -0.02 1.23 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 46 H 0.06 1.58 5.48 -2.39 -0.01 1.57 16 Total: -1.00 -59.70 349.82 4.16 -55.54 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.42 Total: 31.07 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 3.98 Total: -49.70 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.27 Total: -83.37 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -59.70 4.16 -55.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.854 kcal (2) G-P(sol) polarization free energy of solvation -59.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds