Wall clock time and date at job start Mon Mar 30 2020 01:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46835 * 2 1 4 4 H 1.08997 * 109.46966 * 55.49628 * 3 2 1 5 5 C 1.50703 * 109.46702 * 175.49338 * 3 2 1 6 6 H 1.08003 * 119.99555 * 114.60655 * 5 3 2 7 7 C 1.37879 * 119.99939 * 294.60161 * 5 3 2 8 8 N 1.31506 * 120.00309 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47106 * 59.99959 * 9 7 5 11 11 H 1.48499 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47057 * 300.00133 * 9 7 5 13 13 N 1.46900 * 109.47134 * 295.49361 * 3 2 1 14 14 C 1.46903 * 110.99881 * 288.84531 * 13 3 2 15 15 C 1.50697 * 109.46854 * 157.74807 * 14 13 3 16 16 C 1.38238 * 120.00252 * 308.35377 * 15 14 13 17 17 C 1.38233 * 120.00112 * 179.76569 * 16 15 14 18 18 C 1.38228 * 120.00243 * 0.50861 * 17 16 15 19 19 C 1.38242 * 119.99565 * 359.74383 * 18 17 16 20 20 C 1.38227 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.46897 * 110.99488 * 164.89230 * 13 3 2 22 22 C 1.53009 * 109.46793 * 178.77185 * 21 13 3 23 23 C 1.53001 * 109.47575 * 58.77307 * 21 13 3 24 24 C 1.53001 * 109.47431 * 298.76479 * 21 13 3 25 25 H 1.09003 * 109.46778 * 304.27505 * 1 2 3 26 26 H 1.08993 * 109.47286 * 64.28248 * 1 2 3 27 27 H 1.09001 * 109.46863 * 184.28600 * 1 2 3 28 28 H 1.09005 * 109.47060 * 240.00691 * 2 1 3 29 29 H 1.08998 * 109.47380 * 120.00290 * 2 1 3 30 30 H 0.97001 * 120.00295 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46773 * 277.74571 * 14 13 3 32 32 H 1.08999 * 109.46971 * 37.74918 * 14 13 3 33 33 H 1.08003 * 119.99890 * 0.02562 * 16 15 14 34 34 H 1.08001 * 119.99935 * 180.23383 * 17 16 15 35 35 H 1.07998 * 120.00746 * 179.72744 * 18 17 16 36 36 H 1.08004 * 119.99804 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.00190 * 179.97438 * 20 19 18 38 38 H 1.09008 * 109.46742 * 289.05267 * 22 21 13 39 39 H 1.09001 * 109.47097 * 49.05431 * 22 21 13 40 40 H 1.09000 * 109.47341 * 169.05702 * 22 21 13 41 41 H 1.09000 * 109.47486 * 172.57728 * 23 21 13 42 42 H 1.09003 * 109.46506 * 292.58155 * 23 21 13 43 43 H 1.09003 * 109.46785 * 52.57437 * 23 21 13 44 44 H 1.09000 * 109.47057 * 307.34797 * 24 21 13 45 45 H 1.09008 * 109.46606 * 67.34555 * 24 21 13 46 46 H 1.08999 * 109.46898 * 187.33998 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6122 1.9791 0.8469 5 6 3.5428 1.4440 0.1116 6 1 4.1447 1.8116 -0.7064 7 6 4.1494 0.9762 1.2581 8 7 3.4166 0.5282 2.2539 9 14 6.0123 0.9786 1.3967 10 1 6.5166 2.3692 1.2659 11 1 6.4111 0.4291 2.7173 12 1 6.5901 0.1389 0.3167 13 7 1.6411 2.1029 -1.2501 14 6 2.4037 1.5765 -2.3901 15 6 1.6432 1.8346 -3.6652 16 6 0.3186 1.4530 -3.7694 17 6 -0.3804 1.6941 -4.9374 18 6 0.2481 2.3073 -6.0049 19 6 1.5743 2.6842 -5.9026 20 6 2.2718 2.4474 -4.7330 21 6 1.7892 3.5607 -1.1458 22 6 1.3944 4.2097 -2.4740 23 6 3.2450 3.9038 -0.8234 24 6 0.8823 4.0871 -0.0316 25 1 -0.3633 0.5788 0.8492 26 1 -0.3633 0.4459 -0.9258 27 1 -0.3633 -1.0248 0.0768 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8433 0.1987 3.0603 31 1 3.3732 2.0722 -2.4386 32 1 2.5499 0.5036 -2.2650 33 1 -0.1714 0.9703 -2.9367 34 1 -1.4163 1.3994 -5.0174 35 1 -0.2966 2.4917 -6.9190 36 1 2.0655 3.1629 -6.7369 37 1 3.3080 2.7414 -4.6532 38 1 2.1528 3.9897 -3.2254 39 1 0.4332 3.8129 -2.8008 40 1 1.3161 5.2889 -2.3420 41 1 3.3840 4.9836 -0.8757 42 1 3.4867 3.5545 0.1805 43 1 3.9013 3.4175 -1.5451 44 1 -0.1354 3.7318 -0.1933 45 1 1.2440 3.7273 0.9317 46 1 0.8923 5.1770 -0.0395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:07 Heat of formation + Delta-G solvation = 20.473223 kcal Electronic energy + Delta-G solvation = -23322.773363 eV Core-core repulsion = 20405.020475 eV Total energy + Delta-G solvation = -2917.752888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03137 -39.16922 -35.71823 -33.91814 -33.14861 -31.60884 -31.11681 -28.70418 -28.26031 -27.29391 -25.95638 -24.42423 -23.22781 -22.03140 -21.33764 -19.27424 -18.35055 -17.42821 -16.92123 -16.63802 -16.00407 -15.62804 -15.33028 -15.05301 -14.62763 -14.59608 -14.37804 -14.01143 -13.79072 -13.41793 -13.35300 -13.12621 -13.06665 -12.90928 -12.63942 -12.50096 -12.40861 -12.30948 -12.25892 -11.95046 -11.79978 -11.69971 -11.60981 -11.38410 -11.20427 -11.10575 -10.63079 -10.33600 -9.57327 -9.24091 -8.79337 -7.96009 -6.08093 0.65313 0.71834 1.37864 1.40479 1.45061 2.44476 3.05750 3.25259 3.49023 4.10917 4.18366 4.25715 4.30986 4.33871 4.45970 4.56101 4.61653 4.70122 4.78725 4.81785 4.87269 4.90283 4.93802 4.96434 5.02459 5.08959 5.11434 5.18872 5.24776 5.30126 5.37410 5.38547 5.45040 5.49076 5.53000 5.65510 5.71673 5.76887 5.81692 5.82996 5.89442 6.01266 6.12621 6.31818 6.34586 6.53918 6.84726 7.08455 7.55976 9.01244 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.006454 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.660130 B = 4337.093203 C = 4535.625369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C 0.218 3.782 4 H 0.022 0.978 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.929 3.071 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.508 5.508 14 C 0.101 3.899 15 C -0.064 4.064 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.133 4.133 21 C 0.109 3.891 22 C -0.131 4.131 23 C -0.164 4.164 24 C -0.126 4.126 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.256 0.744 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 5.076 -13.324 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 C 0.111 3.889 4 H 0.039 0.961 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.179 4.179 8 N -0.555 5.555 9 Si 0.757 3.243 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.231 5.231 14 C -0.027 4.027 15 C -0.065 4.065 16 C -0.127 4.127 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.151 4.151 21 C 0.019 3.981 22 C -0.189 4.189 23 C -0.223 4.223 24 C -0.184 4.184 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.401 4.899 -13.201 15.468 hybrid contribution 2.270 -0.167 1.043 2.504 sum -4.131 4.732 -12.159 13.685 Atomic orbital electron populations 1.21567 0.96391 0.99378 1.00797 1.21386 0.94453 0.98785 0.99255 1.19138 0.91748 0.90917 0.87120 0.96061 1.22188 0.94049 1.39755 1.00825 0.92056 1.25472 1.00424 0.95803 0.96175 1.70015 1.35841 1.43594 1.06045 0.86057 0.83254 0.78148 0.76824 1.20155 1.21663 1.20288 1.62587 1.53957 1.03014 1.03586 1.20820 0.93957 0.99215 0.88693 1.19969 0.94935 0.97000 0.94571 1.21033 0.93991 0.99916 0.97761 1.21357 1.00462 0.99481 0.93218 1.21345 0.95101 0.99334 0.99247 1.21279 0.95030 1.00369 0.97493 1.21095 1.00021 1.00227 0.93788 1.20917 0.93282 0.88346 0.95549 1.22143 1.01609 0.99187 0.95937 1.22646 0.97935 0.99094 1.02578 1.21775 0.99263 1.00021 0.97335 0.94955 0.92170 0.94096 0.95258 0.93344 0.93430 0.94784 0.92113 0.86840 0.84824 0.84138 0.84412 0.86568 0.92065 0.92437 0.92605 0.93738 0.92216 0.93936 0.92544 0.94758 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 9.74 71.98 0.70 -4.11 16 2 C -0.10 -4.61 5.27 30.60 0.16 -4.45 16 3 C 0.22 10.17 1.29 44.17 0.06 10.22 16 4 H 0.02 1.14 5.85 -2.39 -0.01 1.12 16 5 C -0.53 -26.81 4.90 25.60 0.13 -26.68 16 6 H 0.06 3.09 4.49 -2.91 -0.01 3.07 16 7 C 0.02 1.08 5.30 84.66 0.45 1.53 16 8 N -0.91 -51.55 11.71 21.45 0.25 -51.30 16 9 Si 0.93 43.14 29.54 68.60 2.03 45.16 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.51 -19.75 3.48 -830.58 -2.89 -22.65 16 14 C 0.10 3.78 3.70 85.56 0.32 4.10 16 15 C -0.06 -2.00 3.19 -19.87 -0.06 -2.06 16 16 C -0.11 -3.19 8.45 22.27 0.19 -3.00 16 17 C -0.13 -3.04 10.05 22.27 0.22 -2.81 16 18 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 19 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 20 C -0.13 -3.60 7.50 22.27 0.17 -3.43 16 21 C 0.11 3.92 0.71 3.53 0.00 3.92 16 22 C -0.13 -4.01 6.99 71.99 0.50 -3.51 16 23 C -0.16 -6.37 6.81 71.98 0.49 -5.88 16 24 C -0.13 -4.45 8.11 71.98 0.58 -3.87 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 2.17 6.68 -2.39 -0.02 2.15 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 1.33 6.39 -2.38 -0.02 1.31 16 29 H 0.05 2.55 6.42 -2.39 -0.02 2.53 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.03 1.34 4.71 -2.39 -0.01 1.33 16 32 H 0.06 2.52 6.08 -2.39 -0.01 2.51 16 33 H 0.11 3.57 6.87 -2.91 -0.02 3.55 16 34 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.12 3.03 7.97 -2.91 -0.02 3.01 16 38 H 0.06 1.84 4.75 -2.38 -0.01 1.83 16 39 H 0.06 1.78 6.69 -2.39 -0.02 1.76 16 40 H 0.05 1.52 8.04 -2.39 -0.02 1.50 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 2.74 5.76 -2.39 -0.01 2.73 16 43 H 0.04 1.68 5.09 -2.39 -0.01 1.66 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.03 1.39 6.48 -2.38 -0.02 1.37 16 46 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 Total: -1.00 -55.55 333.53 4.69 -50.86 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.95 Total: 23.09 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 4.35 Total: -45.16 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -2.64 Total: -73.94 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -55.55 4.69 -50.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.331 kcal (2) G-P(sol) polarization free energy of solvation -55.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds