Wall clock time and date at job start Mon Mar 30 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 H 1.08999 * 109.47233 * 304.95690 * 3 2 1 5 5 C 1.50703 * 109.47068 * 184.95092 * 3 2 1 6 6 H 1.07997 * 119.99987 * 239.99780 * 5 3 2 7 7 C 1.37873 * 119.99509 * 60.00548 * 5 3 2 8 8 N 1.31518 * 120.00354 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00024 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47230 * 89.99633 * 9 7 5 11 11 H 1.48498 * 109.47201 * 209.99944 * 9 7 5 12 12 H 1.48502 * 109.46872 * 329.99833 * 9 7 5 13 13 N 1.46910 * 109.47323 * 64.95626 * 3 2 1 14 14 C 1.46902 * 110.99824 * 260.33445 * 13 3 2 15 15 H 1.09000 * 109.46981 * 18.67831 * 14 13 3 16 16 C 1.50693 * 109.46959 * 138.67736 * 14 13 3 17 17 C 1.38254 * 120.00214 * 39.72737 * 16 14 13 18 18 C 1.38222 * 120.00285 * 179.76159 * 17 16 14 19 19 C 1.38256 * 119.99539 * 0.51075 * 18 17 16 20 20 C 1.38211 * 120.00170 * 359.73938 * 19 18 17 21 21 C 1.50699 * 120.00004 * 179.97438 * 20 19 18 22 22 C 1.38212 * 119.99952 * 219.99363 * 16 14 13 23 23 C 1.53002 * 109.47018 * 258.67814 * 14 13 3 24 24 C 1.53006 * 109.46986 * 59.65264 * 23 14 13 25 25 C 1.52998 * 109.46992 * 179.65598 * 23 14 13 26 26 H 1.09003 * 109.47172 * 177.56344 * 1 2 3 27 27 H 1.09000 * 109.47315 * 297.55876 * 1 2 3 28 28 H 1.08996 * 109.46987 * 57.56066 * 1 2 3 29 29 H 1.09001 * 109.47089 * 119.99957 * 2 1 3 30 30 H 1.08990 * 109.46944 * 239.99960 * 2 1 3 31 31 H 0.96999 * 120.00000 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00184 * 136.37832 * 13 3 2 33 33 H 1.08002 * 120.00161 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.99786 * 180.22869 * 18 17 16 35 35 H 1.07997 * 119.99573 * 179.72572 * 19 18 17 36 36 H 1.09000 * 109.46762 * 270.02186 * 21 20 19 37 37 H 1.08995 * 109.47059 * 30.02268 * 21 20 19 38 38 H 1.09002 * 109.47379 * 150.02801 * 21 20 19 39 39 H 1.08002 * 119.99916 * 0.02562 * 22 16 14 40 40 H 1.08997 * 109.47079 * 299.65820 * 23 14 13 41 41 H 1.08997 * 109.46774 * 58.28018 * 24 23 14 42 42 H 1.08994 * 109.46700 * 178.27804 * 24 23 14 43 43 H 1.09001 * 109.47419 * 298.27919 * 24 23 14 44 44 H 1.08998 * 109.47298 * 60.00152 * 25 23 14 45 45 H 1.09007 * 109.46892 * 180.02562 * 25 23 14 46 46 H 1.08995 * 109.46883 * 299.99468 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9813 -0.8422 5 6 3.5420 1.4443 -0.1226 6 1 4.1466 1.8891 0.6538 7 6 4.1441 0.8781 -1.2262 8 7 3.4078 0.3361 -2.1715 9 14 6.0060 0.8809 -1.3787 10 1 6.5554 -0.3503 -0.7564 11 1 6.3850 0.9217 -2.8139 12 1 6.5574 2.0737 -0.6869 13 7 1.6504 2.0996 1.2548 14 6 0.4590 2.9372 1.0626 15 1 -0.0545 2.6345 0.1501 16 6 -0.4675 2.7704 2.2393 17 6 0.0491 2.6802 3.5186 18 6 -0.8009 2.5321 4.5984 19 6 -2.1672 2.4635 4.3982 20 6 -2.6833 2.5484 3.1189 21 6 -4.1725 2.4731 2.9006 22 6 -1.8333 2.7019 2.0393 23 6 0.8796 4.4039 0.9486 24 6 1.8272 4.5716 -0.2410 25 6 -0.3604 5.2753 0.7398 26 1 -0.3634 -1.0268 -0.0437 27 1 -0.3634 0.4755 0.9111 28 1 -0.3633 0.5512 -0.8673 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.8315 -0.0618 -2.9481 32 1 2.4146 2.6392 1.6329 33 1 1.1167 2.7290 3.6746 34 1 -0.3975 2.4654 5.5980 35 1 -2.8311 2.3433 5.2415 36 1 -4.4661 1.4336 2.7542 37 1 -4.6883 2.8770 3.7717 38 1 -4.4403 3.0539 2.0180 39 1 -2.2366 2.7676 1.0395 40 1 1.3878 4.7083 1.8636 41 1 1.3295 4.2385 -1.1516 42 1 2.1027 5.6215 -0.3407 43 1 2.7244 3.9745 -0.0779 44 1 -1.0354 5.1558 1.5873 45 1 -0.0607 6.3202 0.6581 46 1 -0.8685 4.9709 -0.1752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:08 Heat of formation + Delta-G solvation = -2.668632 kcal Electronic energy + Delta-G solvation = -22468.626536 eV Core-core repulsion = 19549.870141 eV Total energy + Delta-G solvation = -2918.756395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.51635 -37.26419 -34.49447 -32.50641 -31.88943 -30.85797 -30.16720 -27.03121 -26.51240 -26.45956 -24.20975 -22.49624 -21.78946 -20.92226 -19.32465 -19.07265 -16.68129 -16.06980 -15.27164 -14.88569 -14.67836 -14.39162 -14.08629 -13.66679 -13.48117 -13.18228 -12.76484 -12.70987 -12.38651 -12.26175 -12.00685 -11.82963 -11.82387 -11.67137 -11.40413 -11.26867 -10.99912 -10.83867 -10.73561 -10.62224 -10.59769 -10.34351 -10.18524 -10.06990 -9.58908 -9.38278 -8.80635 -8.42859 -8.40675 -8.15553 -7.20411 -6.02314 -4.09606 1.74361 1.75560 3.28471 3.35632 3.37648 4.11336 4.39454 4.93963 5.06914 5.23160 5.23800 5.32886 5.36643 5.41997 5.46406 5.54623 5.65991 5.76475 5.86745 5.93399 5.96418 6.03958 6.11105 6.15889 6.27251 6.30463 6.40152 6.43456 6.49176 6.50137 6.51670 6.70341 6.71918 6.85560 6.87225 6.96860 7.09587 7.14984 7.21993 7.39280 7.49346 7.63043 7.78115 7.97045 8.29686 8.42877 8.69602 9.03619 9.56319 11.02262 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.005171 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.105539 B = 5413.458743 C = 5751.955403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.221 3.779 4 H 0.013 0.987 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.127 3.873 15 H 0.076 0.924 16 C -0.040 4.040 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.151 4.151 25 C -0.143 4.143 26 H 0.025 0.975 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.260 0.740 32 H 0.332 0.668 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 6.592 8.259 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.031 0.969 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.309 5.309 14 C 0.016 3.984 15 H 0.094 0.906 16 C -0.041 4.041 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.094 4.094 21 C -0.167 4.167 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.209 4.209 25 C -0.201 4.201 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.753 5.937 8.285 14.816 hybrid contribution 1.391 0.565 -0.639 1.631 sum -9.362 6.502 7.645 13.725 Atomic orbital electron populations 1.21839 0.99698 0.98633 0.99936 1.21538 0.91453 0.99783 1.01655 1.19188 0.93955 0.90940 0.84574 0.96940 1.21395 0.91537 1.38064 1.05125 0.92474 1.24887 0.97909 0.95132 0.95721 1.69890 1.34763 1.38308 1.09453 0.86621 0.85970 0.78431 0.77095 1.20704 1.21353 1.20001 1.60753 1.06206 1.32232 1.31738 1.20659 0.92597 0.90646 0.94484 0.90576 1.20023 0.93200 0.95744 0.95151 1.20948 0.99816 0.99023 0.91860 1.21077 0.93479 1.00918 0.98641 1.20848 0.95262 1.03224 0.96079 1.19768 0.95474 1.00805 0.93402 1.20738 0.92072 1.01978 1.01921 1.20870 0.92978 1.01933 0.98016 1.21722 0.96380 0.95865 0.99088 1.21934 1.00699 1.00727 0.97499 1.21833 0.97925 0.98915 1.01451 0.95604 0.93316 0.94830 0.94659 0.89459 0.92960 0.84984 0.86019 0.86836 0.87079 0.91570 0.92090 0.91904 0.86841 0.91602 0.92884 0.93854 0.90238 0.92690 0.93411 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.81 37.16 0.33 -2.69 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.22 1.16 -68.86 -0.08 5.14 16 4 H 0.01 0.33 6.46 -51.93 -0.34 0.00 16 5 C -0.52 -13.54 7.78 -34.44 -0.27 -13.81 16 6 H 0.06 1.47 7.42 -52.49 -0.39 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.68 -13.55 4.89 -102.17 -0.50 -14.05 16 14 C 0.13 2.20 0.91 -68.87 -0.06 2.14 16 15 H 0.08 1.45 6.28 -51.93 -0.33 1.13 16 16 C -0.04 -0.64 3.26 -104.63 -0.34 -0.98 16 17 C -0.10 -1.52 9.33 -39.58 -0.37 -1.89 16 18 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 19 C -0.14 -1.78 9.70 -39.58 -0.38 -2.16 16 20 C -0.09 -1.26 5.88 -104.62 -0.62 -1.88 16 21 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 22 C -0.12 -1.77 8.36 -39.58 -0.33 -2.10 16 23 C -0.11 -1.73 2.30 -90.62 -0.21 -1.93 16 24 C -0.15 -2.58 8.09 37.16 0.30 -2.28 16 25 C -0.14 -1.95 8.79 37.16 0.33 -1.63 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.99 6.24 -51.93 -0.32 0.66 16 28 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.33 6.58 6.91 -39.29 -0.27 6.30 16 33 H 0.12 1.89 7.71 -52.49 -0.40 1.48 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.11 1.60 8.04 -52.49 -0.42 1.18 16 40 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 41 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.56 5.89 -51.93 -0.31 1.25 16 44 H 0.05 0.74 6.64 -51.93 -0.35 0.39 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -26.80 353.30 -9.59 -36.39 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -8.04 Total: 8.50 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -1.98 Total: -27.98 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.13 Total: -38.01 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.80 -9.59 -36.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.725 kcal (2) G-P(sol) polarization free energy of solvation -26.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds