Wall clock time and date at job start Mon Mar 30 2020 01:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47130 * 2 1 4 4 H 1.08999 * 109.47138 * 306.61050 * 3 2 1 5 5 C 1.50700 * 109.47281 * 186.60800 * 3 2 1 6 6 H 1.07998 * 120.00516 * 244.89840 * 5 3 2 7 7 C 1.37885 * 119.99564 * 64.88958 * 5 3 2 8 8 N 1.31512 * 120.00107 * 192.25058 * 7 5 3 9 9 Si 1.86796 * 119.99938 * 12.25765 * 7 5 3 10 10 H 1.48504 * 109.46984 * 93.62109 * 9 7 5 11 11 H 1.48498 * 109.47250 * 213.61717 * 9 7 5 12 12 H 1.48500 * 109.47319 * 333.62029 * 9 7 5 13 13 N 1.46906 * 109.47468 * 66.61075 * 3 2 1 14 14 C 1.46896 * 110.99882 * 262.41021 * 13 3 2 15 15 H 1.09000 * 109.47205 * 40.10394 * 14 13 3 16 16 C 1.53004 * 109.47072 * 160.09764 * 14 13 3 17 17 C 1.52999 * 109.47374 * 293.43923 * 16 14 13 18 18 C 1.50695 * 109.47321 * 280.09996 * 14 13 3 19 19 C 1.38230 * 120.00200 * 319.86767 * 18 14 13 20 20 C 1.38230 * 120.00284 * 180.02562 * 19 18 14 21 21 C 1.50709 * 120.00282 * 180.34785 * 20 19 18 22 22 C 1.38238 * 120.00197 * 0.07203 * 20 19 18 23 23 C 1.38235 * 119.99723 * 359.97438 * 22 20 19 24 24 C 1.50693 * 119.99882 * 179.97438 * 23 22 20 25 25 C 1.38239 * 120.00149 * 359.97438 * 23 22 20 26 26 H 1.09004 * 109.46777 * 302.27677 * 1 2 3 27 27 H 1.09002 * 109.47401 * 62.27508 * 1 2 3 28 28 H 1.09001 * 109.47366 * 182.27440 * 1 2 3 29 29 H 1.09002 * 109.47013 * 239.99589 * 2 1 3 30 30 H 1.09004 * 109.46971 * 120.00080 * 2 1 3 31 31 H 0.96990 * 120.00322 * 180.02562 * 8 7 5 32 32 H 1.00892 * 110.99891 * 138.45495 * 13 3 2 33 33 H 1.08997 * 109.46542 * 53.44218 * 16 14 13 34 34 H 1.09005 * 109.47184 * 173.43632 * 16 14 13 35 35 H 1.09000 * 109.47270 * 304.51812 * 17 16 14 36 36 H 1.09004 * 109.46906 * 64.51812 * 17 16 14 37 37 H 1.08996 * 109.47040 * 184.51417 * 17 16 14 38 38 H 1.08005 * 119.99923 * 0.11050 * 19 18 14 39 39 H 1.08999 * 109.46523 * 269.72850 * 21 20 19 40 40 H 1.09003 * 109.46727 * 29.71892 * 21 20 19 41 41 H 1.08995 * 109.47475 * 149.72275 * 21 20 19 42 42 H 1.07995 * 119.99852 * 179.97438 * 22 20 19 43 43 H 1.09005 * 109.46945 * 89.99881 * 24 23 22 44 44 H 1.08999 * 109.47443 * 209.99635 * 24 23 22 45 45 H 1.08997 * 109.47733 * 330.00201 * 24 23 22 46 46 H 1.07997 * 120.00014 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5833 1.9893 -0.8249 5 6 3.5381 1.4456 -0.1635 6 1 4.1677 1.8107 0.6344 7 6 4.1050 0.9822 -1.3319 8 7 5.3994 0.7572 -1.3906 9 14 3.0345 0.6740 -2.8313 10 1 3.0318 1.8825 -3.6944 11 1 3.5737 -0.4791 -3.5960 12 1 1.6469 0.3738 -2.3957 13 7 1.6849 2.0875 1.2712 14 6 0.4609 2.8875 1.1316 15 1 -0.2536 2.3525 0.5060 16 6 -0.1513 3.1283 2.5130 17 6 -0.6407 1.7996 3.0927 18 6 0.7957 4.2107 0.4930 19 6 1.9507 4.8794 0.8530 20 6 2.2575 6.0934 0.2675 21 6 3.5207 6.8187 0.6542 22 6 1.4086 6.6396 -0.6769 23 6 0.2530 5.9714 -1.0362 24 6 -0.6727 6.5670 -2.0653 25 6 -0.0533 4.7568 -0.4515 26 1 -0.3633 0.5488 0.8689 27 1 -0.3634 0.4781 -0.9097 28 1 -0.3634 -1.0268 0.0408 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.7983 0.4315 -2.2125 32 1 2.4476 2.6506 1.6163 33 1 0.6014 3.5579 3.1740 34 1 -0.9915 3.8169 2.4231 35 1 -1.3333 1.3312 2.3935 36 1 0.2110 1.1395 3.2576 37 1 -1.1481 1.9814 4.0400 38 1 2.6141 4.4526 1.5907 39 1 3.3148 7.4859 1.4912 40 1 4.2809 6.0940 0.9460 41 1 3.8801 7.4005 -0.1945 42 1 1.6482 7.5883 -1.1340 43 1 -0.3822 6.2227 -3.0579 44 1 -1.6961 6.2548 -1.8576 45 1 -0.6094 7.6544 -2.0251 46 1 -0.9563 4.2350 -0.7320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:51 Heat of formation + Delta-G solvation = 0.953584 kcal Electronic energy + Delta-G solvation = -22485.760015 eV Core-core repulsion = 19567.160691 eV Total energy + Delta-G solvation = -2918.599324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.62327 -37.08698 -34.13187 -33.27338 -31.89012 -31.48192 -30.18944 -27.40203 -26.86625 -26.42608 -24.74165 -22.48793 -21.69803 -20.57685 -19.64283 -19.36995 -16.84903 -16.17506 -15.62594 -15.00795 -14.62997 -14.33627 -13.90444 -13.65873 -13.38444 -13.22241 -13.05313 -12.79349 -12.64719 -12.48453 -12.39503 -12.19284 -12.01758 -11.74334 -11.57399 -11.48301 -11.27100 -11.10870 -10.83997 -10.72403 -10.69255 -10.41316 -10.33560 -9.92847 -9.82073 -9.25517 -9.04042 -8.45340 -8.23048 -8.21531 -7.44557 -6.09486 -4.05174 1.70812 1.72045 3.29258 3.38547 3.42761 4.04471 4.43316 4.96013 4.97889 5.03652 5.16004 5.25536 5.40678 5.43347 5.52564 5.55044 5.60974 5.66695 5.75346 5.79680 5.87597 5.90064 5.96163 6.02150 6.07582 6.07964 6.14505 6.24785 6.28185 6.30826 6.44055 6.46697 6.54305 6.70432 6.75044 6.82505 6.84234 6.87978 6.96786 7.08151 7.13572 7.37964 7.50817 7.68484 8.01158 8.38152 8.64162 8.97865 9.56582 11.03543 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.007762 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.388906 B = 3606.349059 C = 4436.200336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C 0.193 3.807 4 H 0.004 0.996 5 C -0.523 4.523 6 H 0.074 0.926 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.860 3.140 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.247 1.247 13 N -0.667 5.667 14 C 0.117 3.883 15 H 0.085 0.915 16 C -0.104 4.104 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.106 4.106 20 C -0.080 4.080 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.089 4.089 24 C -0.110 4.110 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.262 0.738 32 H 0.339 0.661 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 9.654 3.532 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.021 0.979 5 C -0.561 4.561 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.687 3.313 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.171 1.171 13 N -0.297 5.297 14 C 0.006 3.994 15 H 0.103 0.897 16 C -0.142 4.142 17 C -0.199 4.199 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.169 4.169 22 C -0.149 4.149 23 C -0.089 4.089 24 C -0.167 4.167 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.756 9.003 3.672 15.256 hybrid contribution 0.029 0.539 -1.654 1.740 sum -11.728 9.542 2.018 15.253 Atomic orbital electron populations 1.22038 0.98884 0.99759 1.00817 1.21880 0.92602 0.99521 1.00784 1.19417 0.95578 0.90553 0.86085 0.97851 1.21165 0.89497 1.43133 1.02351 0.90754 1.24868 0.94685 0.94346 0.98581 1.69949 1.10967 1.44948 1.27312 0.87265 0.82713 0.77805 0.83482 1.20997 1.21446 1.17140 1.60789 1.05149 1.33129 1.30680 1.20891 0.94996 0.88289 0.95185 0.89746 1.21467 0.99378 0.97509 0.95847 1.21693 1.01371 0.97780 0.99073 1.20856 0.94527 0.97469 0.96292 1.20794 0.96836 0.94327 1.00498 1.19825 0.96266 0.95315 0.96557 1.20772 0.94864 1.00040 1.01269 1.20765 0.94929 1.00111 0.99116 1.19794 0.95976 0.95267 0.97871 1.20742 0.98110 1.00305 0.97537 1.20847 0.99901 0.95587 0.97946 0.91792 0.94581 0.94675 0.93199 0.92310 0.92771 0.84095 0.92172 0.92804 0.93326 0.91092 0.94033 0.86056 0.91655 0.91135 0.91911 0.86815 0.91485 0.91879 0.91964 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.83 37.16 0.33 -2.57 16 2 C -0.11 -2.41 4.79 -26.73 -0.13 -2.53 16 3 C 0.19 4.44 1.55 -68.87 -0.11 4.34 16 4 H 0.00 0.09 6.11 -51.93 -0.32 -0.22 16 5 C -0.52 -14.37 9.02 -34.44 -0.31 -14.68 16 6 H 0.07 2.20 7.73 -52.49 -0.41 1.80 16 7 C 0.08 2.23 5.36 -17.82 -0.10 2.13 16 8 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.86 21.58 25.73 -169.99 -4.37 17.21 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.25 -5.85 5.33 56.52 0.30 -5.55 16 13 N -0.67 -13.03 5.46 -102.17 -0.56 -13.59 16 14 C 0.12 1.96 1.39 -68.87 -0.10 1.87 16 15 H 0.08 1.46 5.55 -51.93 -0.29 1.17 16 16 C -0.10 -1.47 5.58 -26.73 -0.15 -1.62 16 17 C -0.14 -1.90 9.05 37.16 0.34 -1.56 16 18 C -0.09 -1.53 4.42 -104.63 -0.46 -1.99 16 19 C -0.11 -1.82 8.83 -39.59 -0.35 -2.17 16 20 C -0.08 -1.26 5.88 -104.62 -0.62 -1.87 16 21 C -0.11 -1.48 10.01 36.01 0.36 -1.12 16 22 C -0.13 -1.96 9.36 -39.58 -0.37 -2.33 16 23 C -0.09 -1.33 5.88 -104.63 -0.62 -1.94 16 24 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 25 C -0.12 -1.99 9.33 -39.58 -0.37 -2.36 16 26 H 0.06 1.08 4.00 -51.93 -0.21 0.88 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.17 4.74 -51.93 -0.25 0.92 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.34 6.81 5.75 -39.30 -0.23 6.59 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.64 6.92 -51.93 -0.36 0.28 16 36 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.12 2.06 6.51 -52.48 -0.34 1.71 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 45 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 46 H 0.11 1.65 8.04 -52.49 -0.42 1.23 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -29.72 351.09 -9.09 -38.81 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.94 Total: 8.02 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -2.28 Total: -29.32 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.22 Total: -40.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.37 Total: 17.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.72 -9.09 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.767 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds