Wall clock time and date at job start Mon Mar 30 2020 01:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47092 * 2 1 4 4 H 1.08996 * 109.47186 * 326.83468 * 3 2 1 5 5 C 1.50694 * 109.47176 * 206.82719 * 3 2 1 6 6 H 1.08000 * 120.00387 * 242.99990 * 5 3 2 7 7 C 1.37887 * 119.99972 * 63.00339 * 5 3 2 8 8 N 1.31508 * 119.99641 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00262 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47280 * 89.99444 * 9 7 5 11 11 H 1.48490 * 109.47089 * 209.99914 * 9 7 5 12 12 H 1.48507 * 109.47117 * 329.99930 * 9 7 5 13 13 N 1.46905 * 109.46961 * 86.83003 * 3 2 1 14 14 C 1.46900 * 110.99729 * 186.84986 * 13 3 2 15 15 C 1.53004 * 109.47395 * 297.37928 * 14 13 3 16 16 C 1.53003 * 109.47157 * 57.37936 * 14 13 3 17 17 C 1.46894 * 111.00019 * 310.80433 * 13 3 2 18 18 H 1.08994 * 109.47120 * 322.66670 * 17 13 3 19 19 C 1.53002 * 109.47177 * 82.66817 * 17 13 3 20 20 C 1.50707 * 109.46996 * 202.66551 * 17 13 3 21 21 C 1.38226 * 119.99942 * 319.73038 * 20 17 13 22 22 C 1.38241 * 119.99823 * 179.78864 * 21 20 17 23 23 C 1.38236 * 119.99981 * 0.43948 * 22 21 20 24 24 C 1.38240 * 119.99804 * 359.81225 * 23 22 21 25 25 C 1.38234 * 120.00016 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47338 * 280.02543 * 1 2 3 27 27 H 1.08994 * 109.47190 * 40.02811 * 1 2 3 28 28 H 1.09000 * 109.47201 * 160.03156 * 1 2 3 29 29 H 1.09000 * 109.47212 * 239.99606 * 2 1 3 30 30 H 1.09005 * 109.46847 * 120.00211 * 2 1 3 31 31 H 0.97003 * 120.00195 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47361 * 177.37920 * 14 13 3 33 33 H 1.09000 * 109.46691 * 74.79346 * 15 14 13 34 34 H 1.09004 * 109.46957 * 194.79646 * 15 14 13 35 35 H 1.08996 * 109.46880 * 314.79209 * 15 14 13 36 36 H 1.09002 * 109.46885 * 64.20448 * 16 14 13 37 37 H 1.08996 * 109.47082 * 184.20297 * 16 14 13 38 38 H 1.08997 * 109.47350 * 304.20538 * 16 14 13 39 39 H 1.08999 * 109.46704 * 51.85132 * 19 17 13 40 40 H 1.09002 * 109.47110 * 171.85183 * 19 17 13 41 41 H 1.08997 * 109.47005 * 291.85251 * 19 17 13 42 42 H 1.07997 * 120.00281 * 359.97438 * 21 20 17 43 43 H 1.08003 * 119.99804 * 180.27392 * 22 21 20 44 44 H 1.07996 * 119.99975 * 179.83498 * 23 22 21 45 45 H 1.07997 * 119.99693 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.99870 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3501 2.0717 -0.5622 5 6 3.4028 1.4934 -0.6412 6 1 4.2601 1.8059 -0.0635 7 6 3.5552 1.1413 -1.9656 8 7 2.5113 0.7604 -2.6689 9 14 5.2445 1.2037 -2.7603 10 1 5.9199 -0.1080 -2.5913 11 1 5.1000 1.5034 -4.2074 12 1 6.0568 2.2656 -2.1136 13 7 2.1310 1.9296 1.3829 14 6 2.4612 3.3606 1.4162 15 6 3.8370 3.5815 0.7842 16 6 1.4077 4.1456 0.6320 17 6 0.8892 1.6586 2.1193 18 1 0.0358 1.7954 1.4553 19 6 0.9071 0.2189 2.6369 20 6 0.7777 2.6095 3.2832 21 6 1.8981 2.9227 4.0296 22 6 1.7966 3.7983 5.0946 23 6 0.5729 4.3536 5.4186 24 6 -0.5487 4.0363 4.6753 25 6 -0.4463 3.1641 3.6077 26 1 -0.3634 0.1789 1.0120 27 1 -0.3633 0.7869 -0.6609 28 1 -0.3633 -0.9659 -0.3509 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.6184 0.5130 -3.6007 32 1 2.4767 3.7060 2.4500 33 1 3.7583 3.4883 -0.2990 34 1 4.1976 4.5784 1.0379 35 1 4.5350 2.8352 1.1634 36 1 0.4406 4.0487 1.1254 37 1 1.6922 5.1970 0.5934 38 1 1.3397 3.7501 -0.3814 39 1 1.8340 0.0403 3.1819 40 1 0.0582 0.0614 3.3023 41 1 0.8418 -0.4706 1.7953 42 1 2.8534 2.4856 3.7791 43 1 2.6730 4.0464 5.6750 44 1 0.4931 5.0356 6.2521 45 1 -1.5046 4.4704 4.9281 46 1 -1.3224 2.9166 3.0267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:29 Heat of formation + Delta-G solvation = 79.044876 kcal Electronic energy + Delta-G solvation = -23390.884089 eV Core-core repulsion = 20475.671058 eV Total energy + Delta-G solvation = -2915.213031 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.07205 -37.75292 -33.93450 -33.39785 -31.40379 -30.68842 -29.03035 -28.32044 -27.03358 -25.62558 -23.31790 -22.66650 -22.15797 -20.50165 -20.09319 -18.44176 -16.64486 -16.09166 -15.51261 -15.28652 -14.50170 -14.26413 -14.04460 -13.94260 -13.34072 -13.13842 -12.73063 -12.41284 -12.38421 -12.16658 -11.98796 -11.77227 -11.36354 -11.25042 -11.01128 -10.94306 -10.80747 -10.72897 -10.66863 -10.45196 -10.27539 -10.15625 -10.05310 -9.57324 -9.38645 -9.07901 -8.64695 -8.56108 -8.23163 -8.10289 -7.05282 -5.94735 -3.93152 1.62473 1.64919 3.32995 3.40368 3.42850 4.03404 4.45170 4.92280 5.07431 5.18748 5.20914 5.35130 5.38571 5.74918 5.77404 5.84781 5.92178 5.95750 6.11093 6.14758 6.21202 6.24195 6.28583 6.31991 6.35835 6.44947 6.49800 6.55792 6.66116 6.67518 6.73747 6.78346 6.81286 6.87047 6.93086 7.02154 7.05913 7.26227 7.30920 7.31884 7.48505 7.63800 7.83523 7.94919 8.34195 8.40043 8.68254 9.10792 9.66127 11.11997 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.006296 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.375685 B = 4445.891712 C = 5038.478625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.125 4.125 3 C 0.216 3.784 4 H 0.013 0.987 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.055 3.945 8 N -0.892 5.892 9 Si 0.887 3.113 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.519 5.519 14 C 0.073 3.927 15 C -0.140 4.140 16 C -0.182 4.182 17 C 0.114 3.886 18 H 0.052 0.948 19 C -0.167 4.167 20 C -0.066 4.066 21 C -0.092 4.092 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.121 4.121 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.257 0.743 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 4.099 11.732 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.031 0.969 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.146 4.146 8 N -0.532 5.532 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.244 5.244 14 C -0.036 4.036 15 C -0.197 4.197 16 C -0.240 4.240 17 C 0.006 3.994 18 H 0.070 0.930 19 C -0.224 4.224 20 C -0.066 4.066 21 C -0.110 4.110 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.140 4.140 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.992 3.773 11.756 12.976 hybrid contribution 0.078 0.546 -1.010 1.151 sum -3.914 4.319 10.746 12.225 Atomic orbital electron populations 1.22441 0.99332 1.00012 1.00427 1.21981 0.91962 1.00304 1.02025 1.19439 0.96618 0.91168 0.81774 0.96949 1.21726 0.94471 1.42967 0.94885 0.90121 1.24929 0.96209 0.95943 0.97516 1.69969 1.28818 1.45827 1.08553 0.86674 0.85008 0.78341 0.78460 1.20899 1.21633 1.19893 1.62605 1.29652 1.14246 1.17922 1.21926 0.95016 0.88009 0.98608 1.22393 0.95578 0.97439 1.04305 1.22457 0.99234 0.99810 1.02540 1.20706 0.93998 0.93285 0.91452 0.93044 1.22712 1.00574 0.96706 1.02385 1.20160 0.93055 0.96790 0.96595 1.21087 0.99128 0.97191 0.93608 1.21122 0.97418 0.98568 0.97896 1.21016 0.93138 1.00723 1.00030 1.20996 0.98249 0.98965 0.96343 1.21019 0.97259 0.97894 0.97789 0.92682 0.93628 0.94944 0.89693 0.92497 0.93298 0.90341 0.89003 0.96197 0.92230 0.94090 0.93910 0.91101 0.92467 0.94281 0.87912 0.84922 0.86560 0.86866 0.86778 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 8.06 37.16 0.30 -2.94 16 2 C -0.12 -2.79 4.71 -26.73 -0.13 -2.92 16 3 C 0.22 5.00 1.27 -68.87 -0.09 4.91 16 4 H 0.01 0.34 5.21 -51.93 -0.27 0.07 16 5 C -0.50 -12.74 5.93 -34.44 -0.20 -12.95 16 6 H 0.08 2.04 4.50 -52.49 -0.24 1.80 16 7 C 0.05 1.44 5.11 -17.82 -0.09 1.35 16 8 N -0.89 -24.59 11.74 55.43 0.65 -23.94 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.52 -10.35 3.97 -213.59 -0.85 -11.20 16 14 C 0.07 1.38 2.10 -67.71 -0.14 1.24 16 15 C -0.14 -2.78 7.52 37.16 0.28 -2.50 16 16 C -0.18 -3.45 8.50 37.16 0.32 -3.13 16 17 C 0.11 2.00 1.21 -68.86 -0.08 1.92 16 18 H 0.05 0.97 5.54 -51.93 -0.29 0.68 16 19 C -0.17 -2.77 7.19 37.16 0.27 -2.50 16 20 C -0.07 -1.04 3.11 -104.62 -0.33 -1.36 16 21 C -0.09 -1.40 6.69 -39.59 -0.26 -1.66 16 22 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 23 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 24 C -0.13 -1.63 10.05 -39.58 -0.40 -2.02 16 25 C -0.12 -1.74 9.34 -39.58 -0.37 -2.11 16 26 H 0.05 0.96 3.97 -51.92 -0.21 0.75 16 27 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 2.19 6.16 -51.93 -0.32 1.87 16 30 H 0.06 1.22 5.22 -51.93 -0.27 0.95 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.08 1.40 3.89 -51.93 -0.20 1.20 16 33 H 0.09 2.07 5.69 -51.93 -0.30 1.77 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 1.21 6.79 -51.93 -0.35 0.86 16 36 H 0.04 0.74 6.51 -51.93 -0.34 0.40 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.53 5.99 -51.93 -0.31 1.22 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.10 1.79 2.98 -51.93 -0.15 1.63 16 42 H 0.13 2.12 7.25 -52.49 -0.38 1.74 16 43 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 44 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -26.37 325.96 -8.99 -35.36 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.96 Total: 7.92 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -1.73 Total: -28.83 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.20 Total: -35.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.37 -8.99 -35.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.403 kcal (2) G-P(sol) polarization free energy of solvation -26.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds