Wall clock time and date at job start Mon Mar 30 2020 01:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47092 * 2 1 4 4 H 1.08996 * 109.47186 * 326.83468 * 3 2 1 5 5 C 1.50694 * 109.47176 * 206.82719 * 3 2 1 6 6 H 1.08000 * 120.00387 * 242.99990 * 5 3 2 7 7 C 1.37887 * 119.99972 * 63.00339 * 5 3 2 8 8 N 1.31508 * 119.99641 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00262 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47280 * 89.99444 * 9 7 5 11 11 H 1.48490 * 109.47089 * 209.99914 * 9 7 5 12 12 H 1.48507 * 109.47117 * 329.99930 * 9 7 5 13 13 N 1.46905 * 109.46961 * 86.83003 * 3 2 1 14 14 C 1.46900 * 110.99729 * 186.84986 * 13 3 2 15 15 C 1.53004 * 109.47395 * 297.37928 * 14 13 3 16 16 C 1.53003 * 109.47157 * 57.37936 * 14 13 3 17 17 C 1.46894 * 111.00019 * 310.80433 * 13 3 2 18 18 H 1.08994 * 109.47120 * 322.66670 * 17 13 3 19 19 C 1.53002 * 109.47177 * 82.66817 * 17 13 3 20 20 C 1.50707 * 109.46996 * 202.66551 * 17 13 3 21 21 C 1.38226 * 119.99942 * 319.73038 * 20 17 13 22 22 C 1.38241 * 119.99823 * 179.78864 * 21 20 17 23 23 C 1.38236 * 119.99981 * 0.43948 * 22 21 20 24 24 C 1.38240 * 119.99804 * 359.81225 * 23 22 21 25 25 C 1.38234 * 120.00016 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47338 * 280.02543 * 1 2 3 27 27 H 1.08994 * 109.47190 * 40.02811 * 1 2 3 28 28 H 1.09000 * 109.47201 * 160.03156 * 1 2 3 29 29 H 1.09000 * 109.47212 * 239.99606 * 2 1 3 30 30 H 1.09005 * 109.46847 * 120.00211 * 2 1 3 31 31 H 0.97003 * 120.00195 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47361 * 177.37920 * 14 13 3 33 33 H 1.09000 * 109.46691 * 74.79346 * 15 14 13 34 34 H 1.09004 * 109.46957 * 194.79646 * 15 14 13 35 35 H 1.08996 * 109.46880 * 314.79209 * 15 14 13 36 36 H 1.09002 * 109.46885 * 64.20448 * 16 14 13 37 37 H 1.08996 * 109.47082 * 184.20297 * 16 14 13 38 38 H 1.08997 * 109.47350 * 304.20538 * 16 14 13 39 39 H 1.08999 * 109.46704 * 51.85132 * 19 17 13 40 40 H 1.09002 * 109.47110 * 171.85183 * 19 17 13 41 41 H 1.08997 * 109.47005 * 291.85251 * 19 17 13 42 42 H 1.07997 * 120.00281 * 359.97438 * 21 20 17 43 43 H 1.08003 * 119.99804 * 180.27392 * 22 21 20 44 44 H 1.07996 * 119.99975 * 179.83498 * 23 22 21 45 45 H 1.07997 * 119.99693 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.99870 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3501 2.0717 -0.5622 5 6 3.4028 1.4934 -0.6412 6 1 4.2601 1.8059 -0.0635 7 6 3.5552 1.1413 -1.9656 8 7 2.5113 0.7604 -2.6689 9 14 5.2445 1.2037 -2.7603 10 1 5.9199 -0.1080 -2.5913 11 1 5.1000 1.5034 -4.2074 12 1 6.0568 2.2656 -2.1136 13 7 2.1310 1.9296 1.3829 14 6 2.4612 3.3606 1.4162 15 6 3.8370 3.5815 0.7842 16 6 1.4077 4.1456 0.6320 17 6 0.8892 1.6586 2.1193 18 1 0.0358 1.7954 1.4553 19 6 0.9071 0.2189 2.6369 20 6 0.7777 2.6095 3.2832 21 6 1.8981 2.9227 4.0296 22 6 1.7966 3.7983 5.0946 23 6 0.5729 4.3536 5.4186 24 6 -0.5487 4.0363 4.6753 25 6 -0.4463 3.1641 3.6077 26 1 -0.3634 0.1789 1.0120 27 1 -0.3633 0.7869 -0.6609 28 1 -0.3633 -0.9659 -0.3509 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.6184 0.5130 -3.6007 32 1 2.4767 3.7060 2.4500 33 1 3.7583 3.4883 -0.2990 34 1 4.1976 4.5784 1.0379 35 1 4.5350 2.8352 1.1634 36 1 0.4406 4.0487 1.1254 37 1 1.6922 5.1970 0.5934 38 1 1.3397 3.7501 -0.3814 39 1 1.8340 0.0403 3.1819 40 1 0.0582 0.0614 3.3023 41 1 0.8418 -0.4706 1.7953 42 1 2.8534 2.4856 3.7791 43 1 2.6730 4.0464 5.6750 44 1 0.4931 5.0356 6.2521 45 1 -1.5046 4.4704 4.9281 46 1 -1.3224 2.9166 3.0267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:29 Heat of formation + Delta-G solvation = 66.277050 kcal Electronic energy + Delta-G solvation = -23391.437744 eV Core-core repulsion = 20475.671058 eV Total energy + Delta-G solvation = -2915.766685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42392 -39.07277 -35.53805 -35.09690 -33.03254 -31.73325 -30.55874 -29.75308 -28.71980 -27.31610 -24.85650 -24.02417 -23.45043 -22.05103 -21.51850 -19.98920 -18.38726 -17.41663 -16.96036 -16.71294 -16.24047 -15.66284 -15.39349 -15.29543 -14.91521 -14.45375 -14.23398 -13.90849 -13.77250 -13.59700 -13.42101 -13.36992 -13.10251 -12.77005 -12.65466 -12.62181 -12.34722 -12.24518 -12.10583 -11.89318 -11.86348 -11.70148 -11.56944 -11.32681 -11.10947 -10.75405 -10.46050 -10.15800 -9.63191 -9.31014 -8.70580 -7.97396 -5.99471 0.56469 0.60327 1.43180 1.45773 1.53423 2.49598 2.97369 3.31278 3.41947 3.88604 4.13112 4.24765 4.28829 4.38685 4.42861 4.48002 4.58110 4.61185 4.67277 4.70125 4.76594 4.79166 4.81491 4.89807 4.93793 5.03472 5.08869 5.15557 5.19604 5.25423 5.28556 5.32495 5.34598 5.48459 5.53007 5.64103 5.69064 5.69656 5.73226 5.85726 5.88890 5.94522 6.02058 6.23202 6.48890 6.64792 6.93823 7.12608 7.62577 9.08338 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.006296 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.375685 B = 4445.891712 C = 5038.478625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.225 3.775 4 H -0.020 1.020 5 C -0.501 4.501 6 H 0.081 0.919 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.940 3.060 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.267 1.267 13 N -0.521 5.521 14 C 0.072 3.928 15 C -0.134 4.134 16 C -0.171 4.171 17 C 0.116 3.884 18 H 0.038 0.962 19 C -0.162 4.162 20 C -0.081 4.081 21 C -0.109 4.109 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.132 4.132 26 H 0.080 0.920 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.253 0.747 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 5.355 14.518 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.118 3.882 4 H -0.003 1.003 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.767 3.233 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.191 1.191 13 N -0.246 5.246 14 C -0.036 4.036 15 C -0.191 4.191 16 C -0.230 4.230 17 C 0.008 3.992 18 H 0.056 0.944 19 C -0.219 4.219 20 C -0.082 4.082 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.150 4.150 26 H 0.099 0.901 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.158 0.842 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.273 5.034 14.559 15.987 hybrid contribution 0.132 0.224 -1.756 1.776 sum -4.141 5.258 12.803 14.447 Atomic orbital electron populations 1.22303 0.97291 0.99823 1.01495 1.21852 0.93814 0.99423 1.00621 1.19166 0.94721 0.91134 0.83197 1.00291 1.22052 0.95510 1.41445 0.94977 0.90141 1.25558 0.98873 0.96284 0.98283 1.70102 1.30401 1.47369 1.08431 0.85825 0.81807 0.78307 0.77321 1.20808 1.22048 1.19123 1.62514 1.31271 1.14963 1.15829 1.22018 0.94343 0.87564 0.99682 1.22233 0.96150 0.98653 1.02079 1.22328 0.99746 1.00447 1.00451 1.20673 0.92098 0.94641 0.91825 0.94435 1.22614 1.01344 0.95752 1.02169 1.19981 0.94183 0.97533 0.96472 1.21039 0.98345 0.98450 0.94889 1.21395 0.98822 0.97512 0.97091 1.21412 0.92415 1.00301 1.00361 1.21335 0.99727 0.97904 0.95295 1.21163 0.96813 0.98394 0.98664 0.90150 0.95777 0.93837 0.93391 0.91472 0.93812 0.88198 0.92201 0.93697 0.93080 0.93392 0.92373 0.94584 0.92794 0.92166 0.89057 0.86258 0.84409 0.83817 0.84158 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 8.06 71.98 0.58 -5.49 16 2 C -0.12 -5.48 4.71 30.59 0.14 -5.34 16 3 C 0.22 10.76 1.27 44.16 0.06 10.82 16 4 H -0.02 -1.10 5.21 -2.39 -0.01 -1.12 16 5 C -0.50 -26.23 5.93 25.60 0.15 -26.07 16 6 H 0.08 4.14 4.50 -2.91 -0.01 4.13 16 7 C 0.01 0.40 5.11 84.66 0.43 0.83 16 8 N -0.92 -52.98 11.74 21.45 0.25 -52.73 16 9 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 N -0.52 -20.92 3.97 -829.67 -3.29 -24.22 16 14 C 0.07 2.70 2.10 44.92 0.09 2.80 16 15 C -0.13 -5.28 7.52 71.98 0.54 -4.74 16 16 C -0.17 -6.49 8.50 71.98 0.61 -5.88 16 17 C 0.12 4.00 1.21 44.17 0.05 4.06 16 18 H 0.04 1.41 5.54 -2.39 -0.01 1.40 16 19 C -0.16 -5.19 7.19 71.98 0.52 -4.67 16 20 C -0.08 -2.43 3.11 -19.87 -0.06 -2.49 16 21 C -0.11 -3.08 6.69 22.27 0.15 -2.93 16 22 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 23 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 24 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 25 C -0.13 -3.46 9.34 22.27 0.21 -3.25 16 26 H 0.08 2.77 3.97 -2.38 -0.01 2.76 16 27 H 0.02 1.03 7.61 -2.39 -0.02 1.01 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 2.56 6.16 -2.39 -0.01 2.55 16 30 H 0.07 2.92 5.22 -2.38 -0.01 2.90 16 31 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.10 3.41 3.89 -2.39 -0.01 3.40 16 33 H 0.06 2.74 5.69 -2.39 -0.01 2.73 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 2.07 6.79 -2.39 -0.02 2.05 16 36 H 0.05 1.71 6.51 -2.39 -0.02 1.70 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.61 5.99 -2.39 -0.01 1.59 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 41 H 0.09 3.11 2.98 -2.39 -0.01 3.10 16 42 H 0.12 3.66 7.25 -2.91 -0.02 3.63 16 43 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 44 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 45 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.12 2.95 8.04 -2.91 -0.02 2.93 16 Total: -1.00 -58.53 325.96 4.10 -54.43 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.97 Total: 26.65 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 4.15 Total: -49.94 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -3.04 Total: -76.94 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -58.53 4.10 -54.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.702 kcal (2) G-P(sol) polarization free energy of solvation -58.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds