Wall clock time and date at job start Mon Mar 30 2020 01:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47093 * 2 1 4 4 H 1.09004 * 109.47216 * 193.63866 * 3 2 1 5 5 C 1.50703 * 109.46872 * 313.63647 * 3 2 1 6 6 H 1.08003 * 119.99747 * 115.80786 * 5 3 2 7 7 C 1.37876 * 119.99834 * 295.80754 * 5 3 2 8 8 N 1.31511 * 120.00345 * 349.52821 * 7 5 3 9 9 Si 1.86805 * 119.99892 * 169.52629 * 7 5 3 10 10 H 1.48492 * 109.47301 * 270.00504 * 9 7 5 11 11 H 1.48500 * 109.46781 * 30.00177 * 9 7 5 12 12 H 1.48498 * 109.47088 * 149.99714 * 9 7 5 13 13 N 1.46896 * 109.47178 * 73.63349 * 3 2 1 14 14 C 1.46893 * 111.00328 * 309.39081 * 13 3 2 15 15 C 1.53003 * 109.47538 * 200.02523 * 14 13 3 16 16 C 1.46906 * 110.99605 * 73.34502 * 13 3 2 17 17 C 1.50700 * 109.47075 * 74.27624 * 16 13 3 18 18 C 1.38252 * 119.99973 * 267.22683 * 17 16 13 19 19 C 1.38213 * 120.00077 * 179.77111 * 18 17 16 20 20 C 1.38261 * 119.99871 * 0.49829 * 19 18 17 21 21 C 1.50704 * 119.99791 * 179.72786 * 20 19 18 22 22 C 1.38214 * 119.99850 * 359.75254 * 20 19 18 23 23 C 1.50705 * 119.99720 * 179.97438 * 22 20 19 24 24 C 1.38214 * 120.00085 * 87.49954 * 17 16 13 25 25 H 1.09003 * 109.47165 * 36.71971 * 1 2 3 26 26 H 1.09002 * 109.46728 * 156.71957 * 1 2 3 27 27 H 1.08995 * 109.47169 * 276.71765 * 1 2 3 28 28 H 1.09002 * 109.47611 * 240.00191 * 2 1 3 29 29 H 1.09001 * 109.47502 * 119.99481 * 2 1 3 30 30 H 0.96994 * 119.99774 * 356.34277 * 8 7 5 31 31 H 1.09000 * 109.46916 * 320.02425 * 14 13 3 32 32 H 1.09000 * 109.47113 * 80.02224 * 14 13 3 33 33 H 1.09000 * 109.47004 * 63.84925 * 15 14 13 34 34 H 1.08994 * 109.47603 * 183.85784 * 15 14 13 35 35 H 1.09003 * 109.46492 * 303.85580 * 15 14 13 36 36 H 1.09005 * 109.47114 * 194.27307 * 16 13 3 37 37 H 1.08994 * 109.47088 * 314.27229 * 16 13 3 38 38 H 1.08001 * 120.00492 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.00211 * 180.22815 * 19 18 17 40 40 H 1.08997 * 109.46986 * 270.02227 * 21 20 19 41 41 H 1.08988 * 109.47195 * 30.02417 * 21 20 19 42 42 H 1.08996 * 109.46419 * 150.02782 * 21 20 19 43 43 H 1.09003 * 109.46613 * 270.02220 * 23 22 20 44 44 H 1.08993 * 109.46973 * 30.02307 * 23 22 20 45 45 H 1.08995 * 109.46531 * 150.02515 * 23 22 20 46 46 H 1.08001 * 119.99907 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1027 1.4522 -0.2423 5 6 1.2830 2.2429 -1.0283 6 1 0.6534 3.0636 -0.7175 7 6 1.3941 1.9275 -2.3659 8 7 2.3092 1.0719 -2.7660 9 14 0.2446 2.7154 -3.6100 10 1 -0.9677 1.8724 -3.7669 11 1 -0.1495 4.0656 -3.1338 12 1 0.9376 2.8345 -4.9180 13 7 1.8353 2.0343 1.3288 14 6 0.4526 1.8390 1.7848 15 6 0.1301 2.8528 2.8844 16 6 2.7922 1.4890 2.3010 17 6 4.1555 2.0798 2.0495 18 6 5.0529 1.4228 1.2283 19 6 6.3015 1.9670 0.9938 20 6 6.6570 3.1634 1.5887 21 6 8.0207 3.7537 1.3379 22 6 5.7617 3.8176 2.4138 23 6 6.1494 5.1214 3.0627 24 6 4.5109 3.2758 2.6442 25 1 -0.3634 0.8238 -0.6145 26 1 -0.3633 -0.9440 -0.4062 27 1 -0.3633 0.1202 1.0206 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.9403 0.7033 -2.1283 31 1 -0.2299 1.9823 0.9471 32 1 0.3388 0.8286 2.1774 33 1 0.1773 3.8614 2.4739 34 1 -0.8715 2.6640 3.2704 35 1 0.8552 2.7552 3.6925 36 1 2.4677 1.7408 3.3107 37 1 2.8405 0.4053 2.1945 38 1 4.7771 0.4858 0.7673 39 1 7.0012 1.4556 0.3494 40 1 8.7204 3.3829 2.0869 41 1 8.3646 3.4648 0.3449 42 1 7.9633 4.8403 1.4008 43 1 6.6142 4.9225 4.0284 44 1 6.8548 5.6505 2.4221 45 1 5.2595 5.7340 3.2071 46 1 3.8116 3.7866 3.2896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:25 Heat of formation + Delta-G solvation = 22.686698 kcal Electronic energy + Delta-G solvation = -22464.042742 eV Core-core repulsion = 19546.385837 eV Total energy + Delta-G solvation = -2917.656905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.49536 -37.95942 -33.94320 -32.99822 -31.86344 -30.75248 -29.95153 -27.77158 -26.68287 -25.55110 -23.99916 -23.56213 -21.74370 -20.55158 -20.02094 -18.97351 -16.86371 -15.51988 -15.45879 -14.92609 -14.65246 -14.44130 -14.01884 -13.76405 -13.59531 -13.06718 -12.92097 -12.70602 -12.59682 -12.53120 -12.30748 -11.94732 -11.73737 -11.66042 -11.43638 -11.26441 -10.99363 -10.87561 -10.75092 -10.62142 -10.48774 -10.31357 -10.08468 -9.86945 -9.69347 -9.54964 -8.60989 -8.33217 -8.12503 -8.01059 -7.13225 -6.28243 -3.93473 1.74624 1.82520 3.46048 3.49489 3.64799 4.08276 4.56341 5.01335 5.06158 5.09988 5.27570 5.31018 5.41814 5.49183 5.57439 5.62397 5.68369 5.76437 5.81063 5.92493 5.95122 5.95706 6.02084 6.03907 6.07869 6.10485 6.19845 6.32327 6.37997 6.45234 6.52457 6.54308 6.73189 6.77733 6.79645 6.86761 6.97832 7.09503 7.12016 7.22108 7.29744 7.45381 7.50125 7.97537 8.16497 8.44285 8.68486 8.96462 9.72046 11.08531 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.006115 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.246003 B = 4578.022615 C = 5317.227201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.198 3.802 4 H 0.038 0.962 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.061 2.939 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.515 5.515 14 C 0.049 3.951 15 C -0.148 4.148 16 C 0.084 3.916 17 C -0.057 4.057 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.098 4.098 21 C -0.112 4.112 22 C -0.095 4.095 23 C -0.112 4.112 24 C -0.098 4.098 25 H 0.085 0.915 26 H 0.020 0.980 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.021 0.979 30 H 0.269 0.731 31 H 0.094 0.906 32 H 0.027 0.973 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.308 2.938 11.323 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.609 4.609 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.890 3.110 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.239 5.239 14 C -0.079 4.079 15 C -0.206 4.206 16 C -0.043 4.043 17 C -0.058 4.058 18 C -0.125 4.125 19 C -0.135 4.135 20 C -0.099 4.099 21 C -0.169 4.169 22 C -0.095 4.095 23 C -0.168 4.168 24 C -0.116 4.116 25 H 0.104 0.896 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.976 3.477 9.670 11.418 hybrid contribution 0.231 -1.076 1.538 1.891 sum 5.207 2.402 11.209 12.590 Atomic orbital electron populations 1.22357 0.96747 1.01085 1.00882 1.22145 0.96538 1.01296 0.98802 1.19581 0.97148 0.88916 0.85213 0.94389 1.21773 1.29780 1.17274 0.92091 0.92715 1.25612 0.98576 0.96389 0.97575 1.70750 1.15921 1.29637 1.38433 0.83659 0.75698 0.75691 0.75947 1.21556 1.21491 1.21270 1.62269 1.01357 1.57670 1.02567 1.22540 0.92006 0.95308 0.98011 1.21877 0.99353 1.00778 0.98551 1.21081 0.90271 0.96306 0.96686 1.19754 0.94931 0.94870 0.96229 1.21023 0.93468 1.00290 0.97716 1.20901 0.96713 0.95772 1.00120 1.19617 0.96153 0.95633 0.98455 1.20792 0.93635 1.00797 1.01632 1.19634 0.94243 0.96869 0.98724 1.20792 1.01766 0.94372 0.99903 1.20756 0.95242 0.95247 1.00371 0.89630 0.96115 0.93564 0.92257 0.96004 0.92022 0.88814 0.95480 0.92422 0.93576 0.93820 0.91429 0.94708 0.86579 0.86630 0.91785 0.91926 0.91511 0.91783 0.91530 0.91839 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.22 37.16 0.31 -2.98 16 2 C -0.15 -3.38 5.05 -26.73 -0.14 -3.52 16 3 C 0.20 4.78 1.80 -68.86 -0.12 4.66 16 4 H 0.04 1.01 5.13 -51.93 -0.27 0.74 16 5 C -0.57 -15.35 5.81 -34.44 -0.20 -15.55 16 6 H 0.05 1.52 7.41 -52.48 -0.39 1.13 16 7 C 0.02 0.63 5.14 -17.82 -0.09 0.54 16 8 N -0.91 -26.71 13.07 55.43 0.72 -25.99 16 9 Si 1.06 25.09 29.92 -169.99 -5.09 20.00 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.52 -10.83 4.28 -229.47 -0.98 -11.81 16 14 C 0.05 0.93 3.49 -3.83 -0.01 0.91 16 15 C -0.15 -2.35 10.07 37.16 0.37 -1.97 16 16 C 0.08 1.55 4.84 -4.97 -0.02 1.53 16 17 C -0.06 -1.05 5.07 -104.63 -0.53 -1.58 16 18 C -0.11 -1.95 8.24 -39.59 -0.33 -2.27 16 19 C -0.12 -1.94 9.70 -39.58 -0.38 -2.32 16 20 C -0.10 -1.50 5.88 -104.62 -0.62 -2.11 16 21 C -0.11 -1.31 9.61 36.01 0.35 -0.97 16 22 C -0.09 -1.45 5.88 -104.62 -0.62 -2.06 16 23 C -0.11 -1.31 9.60 36.01 0.35 -0.97 16 24 C -0.10 -1.64 9.37 -39.58 -0.37 -2.01 16 25 H 0.09 2.01 5.44 -51.93 -0.28 1.73 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.88 4.76 -51.93 -0.25 0.63 16 28 H 0.06 1.49 6.70 -51.93 -0.35 1.14 16 29 H 0.02 0.46 6.36 -51.93 -0.33 0.13 16 30 H 0.27 7.88 6.14 -40.82 -0.25 7.62 16 31 H 0.09 1.95 4.92 -51.93 -0.26 1.70 16 32 H 0.03 0.50 5.92 -51.93 -0.31 0.19 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.64 6.69 -51.93 -0.35 0.30 16 36 H 0.07 1.11 6.45 -51.93 -0.33 0.78 16 37 H 0.03 0.65 6.22 -51.93 -0.32 0.33 16 38 H 0.12 2.15 7.77 -52.49 -0.41 1.75 16 39 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.70 8.08 -51.94 -0.42 0.28 16 42 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 45 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 46 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -29.21 341.16 -9.56 -38.77 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.30 Total: 4.55 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -2.06 Total: -30.67 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.26 Total: -37.79 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.21 -9.56 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.459 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds