Wall clock time and date at job start Mon Mar 30 2020 01:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47245 * 2 1 4 4 H 1.09002 * 109.47008 * 24.70262 * 3 2 1 5 5 C 1.50700 * 109.47060 * 144.70274 * 3 2 1 6 6 H 1.08002 * 119.99371 * 120.00680 * 5 3 2 7 7 C 1.37873 * 120.00315 * 299.99958 * 5 3 2 8 8 N 1.31520 * 119.99953 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00088 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47214 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47131 * 120.00256 * 9 7 5 12 12 H 1.48502 * 109.46894 * 239.99656 * 9 7 5 13 13 N 1.46903 * 109.47280 * 264.70652 * 3 2 1 14 14 C 1.46904 * 110.99661 * 37.37551 * 13 3 2 15 15 C 1.46890 * 111.00146 * 161.32992 * 13 3 2 16 16 C 1.53002 * 109.47319 * 53.20632 * 15 13 3 17 17 C 1.52996 * 109.47462 * 293.20522 * 15 13 3 18 18 C 1.53006 * 109.47058 * 173.20546 * 15 13 3 19 19 C 1.50700 * 109.46733 * 179.97438 * 18 15 13 20 20 C 1.38231 * 119.99867 * 90.00764 * 19 18 15 21 21 C 1.38240 * 120.00003 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.99976 * 0.08619 * 21 20 19 23 23 C 1.38233 * 119.99996 * 359.86249 * 22 21 20 24 24 C 1.38233 * 120.00246 * 269.97588 * 19 18 15 25 25 H 1.09001 * 109.46782 * 74.62251 * 1 2 3 26 26 H 1.09001 * 109.46773 * 194.62192 * 1 2 3 27 27 H 1.08996 * 109.46739 * 314.61767 * 1 2 3 28 28 H 1.08998 * 109.47113 * 239.99790 * 2 1 3 29 29 H 1.09000 * 109.46867 * 120.00359 * 2 1 3 30 30 H 0.96995 * 120.00208 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46502 * 177.50899 * 14 13 3 32 32 H 1.09003 * 109.47015 * 297.49640 * 14 13 3 33 33 H 1.08997 * 109.47149 * 57.50406 * 14 13 3 34 34 H 1.09002 * 109.47223 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.47140 * 299.99898 * 16 15 13 36 36 H 1.09004 * 109.46906 * 59.99967 * 16 15 13 37 37 H 1.08996 * 109.47264 * 300.33059 * 17 15 13 38 38 H 1.09007 * 109.47201 * 60.32563 * 17 15 13 39 39 H 1.09001 * 109.47722 * 180.32548 * 17 15 13 40 40 H 1.09000 * 109.47008 * 60.00314 * 18 15 13 41 41 H 1.08996 * 109.46872 * 299.99652 * 18 15 13 42 42 H 1.08001 * 120.00192 * 359.69001 * 20 19 18 43 43 H 1.08003 * 119.99883 * 179.97438 * 21 20 19 44 44 H 1.08000 * 119.99818 * 179.97438 * 22 21 20 45 45 H 1.08000 * 119.99981 * 180.02562 * 23 22 21 46 46 H 1.08005 * 119.99754 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.2809 2.0962 0.4295 5 6 3.3008 1.5295 0.8210 6 1 4.2208 1.8629 0.3639 7 6 3.2798 1.1837 2.1555 8 7 2.1593 0.7783 2.7121 9 14 4.8424 1.2922 3.1732 10 1 5.9575 1.7729 2.3184 11 1 4.6359 2.2400 4.2977 12 1 5.1760 -0.0505 3.7126 13 7 2.3238 1.8616 -1.3791 14 6 1.3329 1.3081 -2.3118 15 6 2.3840 3.3256 -1.4826 16 6 3.3726 3.8697 -0.4494 17 6 0.9961 3.9130 -1.2191 18 6 2.8460 3.7190 -2.8871 19 6 2.9072 5.2210 -2.9934 20 6 4.0739 5.8896 -2.6733 21 6 4.1302 7.2674 -2.7713 22 6 3.0191 7.9766 -3.1877 23 6 1.8527 7.3080 -3.5087 24 6 1.7967 5.9302 -3.4115 25 1 -0.3633 0.2725 -0.9909 26 1 -0.3633 -0.9944 0.2594 27 1 -0.3633 0.7218 0.7315 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.1445 0.5347 3.6509 31 1 1.5405 1.6697 -3.3190 32 1 1.3891 0.2196 -2.2979 33 1 0.3342 1.6244 -2.0108 34 1 3.4176 4.9561 -0.5265 35 1 3.0435 3.5895 0.5512 36 1 4.3614 3.4512 -0.6371 37 1 0.2905 3.5210 -1.9515 38 1 0.6693 3.6376 -0.2163 39 1 1.0395 4.9991 -1.3016 40 1 2.1417 3.3314 -3.6232 41 1 3.8348 3.3006 -3.0748 42 1 4.9402 5.3360 -2.3423 43 1 5.0417 7.7898 -2.5209 44 1 3.0630 9.0531 -3.2638 45 1 0.9847 7.8621 -3.8344 46 1 0.8851 5.4077 -3.6617 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:38 Heat of formation + Delta-G solvation = 34.523644 kcal Electronic energy + Delta-G solvation = -22782.572572 eV Core-core repulsion = 19865.428955 eV Total energy + Delta-G solvation = -2917.143617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71015 -38.12449 -34.48545 -32.34879 -31.17074 -30.79518 -29.38113 -28.08461 -26.58796 -25.56084 -24.17887 -22.62142 -22.27099 -21.35626 -19.59522 -17.81704 -16.47165 -16.27231 -15.49134 -14.97973 -14.85212 -14.74874 -14.08054 -13.58015 -13.33801 -13.27923 -12.89750 -12.74351 -12.46459 -12.07550 -11.98701 -11.64468 -11.42934 -11.40434 -11.14408 -10.91119 -10.83722 -10.79290 -10.69263 -10.54292 -10.47926 -10.22416 -10.16254 -9.71229 -9.40023 -9.28551 -8.78988 -8.72272 -8.39391 -8.24295 -7.01920 -5.93388 -3.92493 1.54206 1.56283 3.32692 3.41528 3.45548 3.95061 4.46433 4.87179 5.01728 5.10149 5.21540 5.35244 5.39331 5.48837 5.62166 5.69334 5.74638 5.92232 5.96797 6.10585 6.12812 6.18939 6.26509 6.29855 6.34563 6.34808 6.44110 6.55199 6.57600 6.63765 6.65825 6.69972 6.70383 6.72558 6.90277 6.97155 7.03786 7.18010 7.24951 7.29742 7.49257 7.60552 7.82224 7.95508 8.38996 8.39744 8.67580 9.11711 9.66612 11.12496 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.005912 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.609291 B = 4735.297304 C = 5735.582311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.214 3.786 4 H 0.012 0.988 5 C -0.487 4.487 6 H 0.068 0.932 7 C 0.053 3.947 8 N -0.892 5.892 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.526 5.526 14 C 0.016 3.984 15 C 0.127 3.873 16 C -0.139 4.139 17 C -0.179 4.179 18 C -0.073 4.073 19 C -0.059 4.059 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.257 0.743 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.032 0.968 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 8.918 -10.880 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.109 3.891 4 H 0.029 0.971 5 C -0.526 4.526 6 H 0.086 0.914 7 C -0.147 4.147 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.251 5.251 14 C -0.132 4.132 15 C 0.037 3.963 16 C -0.196 4.196 17 C -0.238 4.238 18 C -0.111 4.111 19 C -0.060 4.060 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.460 8.651 -10.818 13.859 hybrid contribution -0.130 0.339 0.931 0.999 sum -0.590 8.990 -9.887 13.376 Atomic orbital electron populations 1.21961 0.98909 0.99779 0.99435 1.21737 0.92458 0.99779 1.01215 1.19457 0.95801 0.91591 0.82277 0.97093 1.21386 0.95827 1.42128 0.93253 0.91400 1.24924 0.95851 0.96016 0.97954 1.69988 1.25404 1.45620 1.12125 0.86606 0.84040 0.77492 0.80305 1.19760 1.21369 1.21291 1.62440 1.46935 1.06625 1.09053 1.22589 0.94018 1.00637 0.95974 1.20685 0.93858 0.88573 0.93149 1.22285 0.98750 0.97075 1.01486 1.22533 0.98621 1.00661 1.01982 1.20787 1.02556 0.89894 0.97863 1.19955 0.93240 0.96234 0.96561 1.21133 0.98102 0.94204 0.99494 1.21109 0.98360 0.94366 1.00190 1.21036 0.93636 0.99403 1.01100 1.21065 0.97815 0.94501 1.00820 1.21052 0.98080 0.94003 1.00439 0.94773 0.95090 0.93160 0.94457 0.89571 0.93325 0.93492 0.91538 0.96208 0.94955 0.88697 0.92726 0.93569 0.91939 0.92877 0.91596 0.90540 0.85952 0.86510 0.86738 0.86649 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.47 37.16 0.35 -2.60 16 2 C -0.11 -2.63 4.72 -26.73 -0.13 -2.76 16 3 C 0.21 5.07 1.31 -68.86 -0.09 4.98 16 4 H 0.01 0.30 5.29 -51.93 -0.27 0.03 16 5 C -0.49 -12.63 5.83 -34.44 -0.20 -12.83 16 6 H 0.07 1.78 5.94 -52.49 -0.31 1.47 16 7 C 0.05 1.41 5.04 -17.82 -0.09 1.32 16 8 N -0.89 -24.71 11.65 55.43 0.65 -24.06 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.53 -10.75 4.48 -220.61 -0.99 -11.74 16 14 C 0.02 0.29 7.10 60.07 0.43 0.71 16 15 C 0.13 2.32 0.48 -131.60 -0.06 2.26 16 16 C -0.14 -2.74 6.45 37.16 0.24 -2.50 16 17 C -0.18 -3.17 7.23 37.16 0.27 -2.90 16 18 C -0.07 -1.14 4.32 -27.88 -0.12 -1.26 16 19 C -0.06 -0.85 4.01 -104.63 -0.42 -1.27 16 20 C -0.11 -1.54 7.89 -39.58 -0.31 -1.85 16 21 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 23 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 24 C -0.12 -1.56 7.88 -39.58 -0.31 -1.87 16 25 H 0.03 0.62 5.67 -51.93 -0.29 0.33 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.11 7.73 -51.93 -0.40 0.71 16 28 H 0.04 0.82 6.10 -51.93 -0.32 0.51 16 29 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.05 0.74 6.07 -51.93 -0.32 0.42 16 32 H 0.07 1.20 5.68 -51.93 -0.30 0.90 16 33 H 0.02 0.35 5.14 -51.93 -0.27 0.08 16 34 H 0.03 0.58 6.17 -51.93 -0.32 0.26 16 35 H 0.09 2.19 5.49 -51.93 -0.29 1.91 16 36 H 0.05 1.10 7.07 -51.93 -0.37 0.74 16 37 H 0.05 0.76 6.49 -51.93 -0.34 0.42 16 38 H 0.06 1.26 6.30 -51.92 -0.33 0.93 16 39 H 0.05 0.88 6.15 -51.93 -0.32 0.56 16 40 H 0.07 0.97 6.28 -51.93 -0.33 0.64 16 41 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 42 H 0.12 1.65 8.02 -52.49 -0.42 1.22 16 43 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 44 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.44 8.03 -52.48 -0.42 1.02 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -27.06 331.22 -9.17 -36.24 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.16 Total: 4.87 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -1.64 Total: -26.31 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.34 Total: -35.80 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.06 -9.17 -36.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.761 kcal (2) G-P(sol) polarization free energy of solvation -27.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds