Wall clock time and date at job start Mon Mar 30 2020 01:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 H 1.09004 * 109.47207 * 304.63955 * 3 2 1 5 5 C 1.50697 * 109.46977 * 184.63554 * 3 2 1 6 6 H 1.07997 * 120.00154 * 275.21894 * 5 3 2 7 7 C 1.37879 * 119.99782 * 95.49840 * 5 3 2 8 8 N 1.31507 * 120.00140 * 186.07402 * 7 5 3 9 9 Si 1.86806 * 119.99878 * 6.07055 * 7 5 3 10 10 H 1.48501 * 109.46849 * 86.02009 * 9 7 5 11 11 H 1.48500 * 109.46851 * 206.01927 * 9 7 5 12 12 H 1.48498 * 109.47038 * 326.01814 * 9 7 5 13 13 N 1.46908 * 109.46869 * 64.63710 * 3 2 1 14 14 C 1.46900 * 110.99862 * 74.69537 * 13 3 2 15 15 C 1.46904 * 110.99840 * 198.64448 * 13 3 2 16 16 C 1.52999 * 109.46950 * 301.33314 * 15 13 3 17 17 C 1.53004 * 109.46951 * 61.33187 * 15 13 3 18 18 C 1.52995 * 109.47105 * 181.33098 * 15 13 3 19 19 C 1.50701 * 109.47268 * 180.02562 * 18 15 13 20 20 C 1.38237 * 119.99825 * 269.72928 * 19 18 15 21 21 C 1.38230 * 119.99800 * 179.76396 * 20 19 18 22 22 C 1.38240 * 120.00009 * 0.48641 * 21 20 19 23 23 C 1.38231 * 119.99880 * 359.78770 * 22 21 20 24 24 C 1.38234 * 120.00286 * 359.95937 * 23 22 21 25 25 H 1.09002 * 109.47444 * 184.71243 * 1 2 3 26 26 H 1.09007 * 109.46951 * 304.71224 * 1 2 3 27 27 H 1.09000 * 109.47115 * 64.70778 * 1 2 3 28 28 H 1.09001 * 109.46816 * 239.99720 * 2 1 3 29 29 H 1.09001 * 109.46542 * 120.00212 * 2 1 3 30 30 H 0.97002 * 120.00006 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46919 * 59.99448 * 14 13 3 32 32 H 1.09000 * 109.47124 * 180.02562 * 14 13 3 33 33 H 1.09001 * 109.46630 * 299.99800 * 14 13 3 34 34 H 1.09004 * 109.47510 * 67.30286 * 16 15 13 35 35 H 1.09003 * 109.46629 * 187.30055 * 16 15 13 36 36 H 1.08997 * 109.46999 * 307.29716 * 16 15 13 37 37 H 1.08998 * 109.47076 * 62.68843 * 17 15 13 38 38 H 1.08994 * 109.47190 * 182.68630 * 17 15 13 39 39 H 1.08998 * 109.47022 * 302.68653 * 17 15 13 40 40 H 1.09005 * 109.46883 * 300.00331 * 18 15 13 41 41 H 1.08999 * 109.47025 * 59.99846 * 18 15 13 42 42 H 1.07995 * 120.00028 * 359.97438 * 20 19 18 43 43 H 1.08000 * 120.00367 * 180.25023 * 21 20 19 44 44 H 1.07999 * 120.00059 * 179.77037 * 22 21 20 45 45 H 1.08003 * 120.00110 * 179.97438 * 23 22 21 46 46 H 1.07999 * 120.00612 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6105 1.9798 -0.8455 5 6 3.5427 1.4439 -0.1148 6 1 4.1520 1.3343 0.7701 7 6 4.1396 1.5909 -1.3490 8 7 5.4440 1.4730 -1.4667 9 14 3.0953 1.9576 -2.8538 10 1 2.8834 3.4233 -2.9641 11 1 3.7899 1.4649 -4.0704 12 1 1.7824 1.2761 -2.7233 13 7 1.6440 2.1018 1.2516 14 6 2.4664 1.6351 2.3757 15 6 1.7118 3.5635 1.1209 16 6 3.1368 3.9764 0.7468 17 6 0.7442 4.0233 0.0285 18 6 1.3252 4.2130 2.4511 19 6 1.3942 5.7124 2.3169 20 6 2.5707 6.3786 2.6047 21 6 2.6355 7.7535 2.4769 22 6 1.5207 8.4632 2.0709 23 6 0.3426 7.7975 1.7886 24 6 0.2794 6.4221 1.9113 25 1 -0.3634 -1.0242 0.0844 26 1 -0.3633 0.5853 0.8448 27 1 -0.3633 0.4391 -0.9292 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8639 1.5761 -2.3351 31 1 3.5142 1.8613 2.1778 32 1 2.1519 2.1387 3.2898 33 1 2.3431 0.5585 2.4936 34 1 3.3659 3.6219 -0.2582 35 1 3.2198 5.0628 0.7766 36 1 3.8397 3.5388 1.4556 37 1 -0.2761 3.7714 0.3174 38 1 0.8292 5.1021 -0.1015 39 1 0.9903 3.5239 -0.9086 40 1 0.3100 3.9187 2.7175 41 1 2.0145 3.8853 3.2293 42 1 3.4402 5.8247 2.9261 43 1 3.5558 8.2737 2.6978 44 1 1.5703 9.5377 1.9746 45 1 -0.5284 8.3520 1.4718 46 1 -0.6409 5.9019 1.6904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:40 Heat of formation + Delta-G solvation = 30.812134 kcal Electronic energy + Delta-G solvation = -23005.368065 eV Core-core repulsion = 20088.063505 eV Total energy + Delta-G solvation = -2917.304560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72870 -38.14429 -34.40448 -32.15332 -31.53022 -30.79137 -29.90251 -27.70919 -26.63157 -25.88120 -24.33392 -22.55023 -22.25954 -21.42893 -19.49501 -17.70655 -17.06074 -16.36890 -15.63278 -14.96959 -14.91176 -14.56190 -14.07156 -13.52402 -13.30338 -13.25206 -13.04141 -12.68791 -12.51298 -12.45098 -11.97829 -11.72103 -11.65265 -11.56262 -11.26923 -11.02007 -10.90596 -10.82048 -10.74006 -10.56877 -10.27717 -10.22662 -10.03085 -9.80611 -9.70106 -9.55771 -9.01550 -8.71635 -8.46989 -8.37761 -7.03339 -6.11061 -4.04747 1.55096 1.57380 3.23764 3.33555 3.35735 3.95899 4.37646 4.83952 5.02702 5.10632 5.18594 5.24865 5.37277 5.50708 5.57027 5.70317 5.75800 5.94222 6.03015 6.11261 6.13872 6.15841 6.19338 6.28326 6.31551 6.35751 6.39959 6.53344 6.62104 6.63892 6.64851 6.66553 6.73878 6.77667 6.81194 6.85446 6.92776 7.06773 7.12936 7.19584 7.28258 7.35306 7.51884 7.67813 8.15325 8.27908 8.52665 8.94058 9.53054 11.01347 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.019021 B = 0.006362 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.698254 B = 4399.968090 C = 4836.914758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C 0.170 3.830 4 H 0.047 0.953 5 C -0.530 4.530 6 H 0.083 0.917 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.858 3.142 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.524 5.524 14 C 0.023 3.977 15 C 0.123 3.877 16 C -0.168 4.168 17 C -0.139 4.139 18 C -0.074 4.074 19 C -0.061 4.061 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.116 4.116 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.262 0.738 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 8.914 6.741 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C 0.063 3.937 4 H 0.064 0.936 5 C -0.568 4.568 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.247 5.247 14 C -0.126 4.126 15 C 0.033 3.967 16 C -0.226 4.226 17 C -0.196 4.196 18 C -0.111 4.111 19 C -0.061 4.061 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.135 4.135 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.448 8.772 6.701 14.530 hybrid contribution 0.563 0.420 -1.225 1.412 sum -8.885 9.193 5.476 13.908 Atomic orbital electron populations 1.21770 0.98036 0.99265 1.01125 1.21648 0.93215 0.98984 1.00473 1.19848 0.94501 0.90932 0.88441 0.93553 1.21612 0.90610 1.49540 0.95084 0.89957 1.24956 0.94526 0.94846 0.98252 1.69907 1.09275 1.49739 1.24488 0.87172 0.81539 0.79323 0.83479 1.19976 1.21601 1.18608 1.62650 1.52927 1.03119 1.05989 1.22361 0.97716 0.99606 0.92879 1.20680 0.94733 0.88690 0.92614 1.22642 0.96382 0.98405 1.05210 1.21965 0.98808 1.00065 0.98789 1.20812 1.02343 0.89529 0.98451 1.19948 0.93251 0.96015 0.96918 1.21112 0.97599 0.94163 1.00066 1.21102 0.98267 0.94381 1.00294 1.21038 0.93512 0.99448 1.01128 1.21072 0.97800 0.94574 1.00784 1.21070 0.98443 0.93895 1.00042 0.95037 0.92012 0.94475 0.93250 0.93113 0.92773 0.93447 0.93787 0.92690 0.89526 0.94978 0.92746 0.92902 0.92913 0.92643 0.90951 0.90944 0.86124 0.86529 0.86741 0.86618 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.85 37.16 0.37 -2.22 16 2 C -0.10 -2.19 5.42 -26.73 -0.15 -2.33 16 3 C 0.17 3.76 1.02 -68.86 -0.07 3.69 16 4 H 0.05 1.08 2.64 -51.93 -0.14 0.94 16 5 C -0.53 -13.58 5.30 -34.44 -0.18 -13.76 16 6 H 0.08 2.31 5.73 -52.49 -0.30 2.00 16 7 C 0.08 2.09 4.73 -17.82 -0.08 2.00 16 8 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.86 20.93 26.41 -169.99 -4.49 16.44 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.16 6.71 56.52 0.38 -5.78 16 13 N -0.52 -10.15 3.88 -220.61 -0.86 -11.01 16 14 C 0.02 0.42 8.11 60.06 0.49 0.91 16 15 C 0.12 2.22 0.48 -131.60 -0.06 2.16 16 16 C -0.17 -3.44 6.63 37.16 0.25 -3.19 16 17 C -0.14 -2.46 7.72 37.16 0.29 -2.17 16 18 C -0.07 -1.13 4.06 -27.88 -0.11 -1.24 16 19 C -0.06 -0.88 4.02 -104.62 -0.42 -1.30 16 20 C -0.11 -1.58 7.73 -39.58 -0.31 -1.88 16 21 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.12 -1.51 10.05 -39.59 -0.40 -1.90 16 24 C -0.12 -1.55 7.95 -39.58 -0.31 -1.86 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.08 7.61 -51.93 -0.40 0.69 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.05 6.74 -51.93 -0.35 0.70 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.05 0.99 4.27 -51.93 -0.22 0.77 16 32 H 0.04 0.71 5.99 -51.93 -0.31 0.40 16 33 H 0.05 1.02 6.75 -51.93 -0.35 0.67 16 34 H 0.09 2.08 4.82 -51.93 -0.25 1.83 16 35 H 0.03 0.61 5.70 -51.93 -0.30 0.31 16 36 H 0.05 1.16 6.07 -51.93 -0.32 0.85 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.88 6.37 -51.93 -0.33 0.55 16 39 H 0.05 1.10 5.87 -51.93 -0.30 0.79 16 40 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 41 H 0.07 1.10 6.19 -51.93 -0.32 0.78 16 42 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 46 H 0.12 1.45 8.03 -52.49 -0.42 1.03 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -27.71 332.27 -8.33 -36.05 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.26 Total: 6.10 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -1.51 Total: -27.06 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.08 Total: -36.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.49 Total: 16.44 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.71 -8.33 -36.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.858 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds