Wall clock time and date at job start Mon Mar 30 2020 01:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47368 * 2 1 4 4 H 1.09004 * 109.47207 * 304.63955 * 3 2 1 5 5 C 1.50697 * 109.46977 * 184.63554 * 3 2 1 6 6 H 1.07997 * 120.00154 * 275.21894 * 5 3 2 7 7 C 1.37879 * 119.99782 * 95.49840 * 5 3 2 8 8 N 1.31507 * 120.00140 * 186.07402 * 7 5 3 9 9 Si 1.86806 * 119.99878 * 6.07055 * 7 5 3 10 10 H 1.48501 * 109.46849 * 86.02009 * 9 7 5 11 11 H 1.48500 * 109.46851 * 206.01927 * 9 7 5 12 12 H 1.48498 * 109.47038 * 326.01814 * 9 7 5 13 13 N 1.46908 * 109.46869 * 64.63710 * 3 2 1 14 14 C 1.46900 * 110.99862 * 74.69537 * 13 3 2 15 15 C 1.46904 * 110.99840 * 198.64448 * 13 3 2 16 16 C 1.52999 * 109.46950 * 301.33314 * 15 13 3 17 17 C 1.53004 * 109.46951 * 61.33187 * 15 13 3 18 18 C 1.52995 * 109.47105 * 181.33098 * 15 13 3 19 19 C 1.50701 * 109.47268 * 180.02562 * 18 15 13 20 20 C 1.38237 * 119.99825 * 269.72928 * 19 18 15 21 21 C 1.38230 * 119.99800 * 179.76396 * 20 19 18 22 22 C 1.38240 * 120.00009 * 0.48641 * 21 20 19 23 23 C 1.38231 * 119.99880 * 359.78770 * 22 21 20 24 24 C 1.38234 * 120.00286 * 359.95937 * 23 22 21 25 25 H 1.09002 * 109.47444 * 184.71243 * 1 2 3 26 26 H 1.09007 * 109.46951 * 304.71224 * 1 2 3 27 27 H 1.09000 * 109.47115 * 64.70778 * 1 2 3 28 28 H 1.09001 * 109.46816 * 239.99720 * 2 1 3 29 29 H 1.09001 * 109.46542 * 120.00212 * 2 1 3 30 30 H 0.97002 * 120.00006 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46919 * 59.99448 * 14 13 3 32 32 H 1.09000 * 109.47124 * 180.02562 * 14 13 3 33 33 H 1.09001 * 109.46630 * 299.99800 * 14 13 3 34 34 H 1.09004 * 109.47510 * 67.30286 * 16 15 13 35 35 H 1.09003 * 109.46629 * 187.30055 * 16 15 13 36 36 H 1.08997 * 109.46999 * 307.29716 * 16 15 13 37 37 H 1.08998 * 109.47076 * 62.68843 * 17 15 13 38 38 H 1.08994 * 109.47190 * 182.68630 * 17 15 13 39 39 H 1.08998 * 109.47022 * 302.68653 * 17 15 13 40 40 H 1.09005 * 109.46883 * 300.00331 * 18 15 13 41 41 H 1.08999 * 109.47025 * 59.99846 * 18 15 13 42 42 H 1.07995 * 120.00028 * 359.97438 * 20 19 18 43 43 H 1.08000 * 120.00367 * 180.25023 * 21 20 19 44 44 H 1.07999 * 120.00059 * 179.77037 * 22 21 20 45 45 H 1.08003 * 120.00110 * 179.97438 * 23 22 21 46 46 H 1.07999 * 120.00612 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6105 1.9798 -0.8455 5 6 3.5427 1.4439 -0.1148 6 1 4.1520 1.3343 0.7701 7 6 4.1396 1.5909 -1.3490 8 7 5.4440 1.4730 -1.4667 9 14 3.0953 1.9576 -2.8538 10 1 2.8834 3.4233 -2.9641 11 1 3.7899 1.4649 -4.0704 12 1 1.7824 1.2761 -2.7233 13 7 1.6440 2.1018 1.2516 14 6 2.4664 1.6351 2.3757 15 6 1.7118 3.5635 1.1209 16 6 3.1368 3.9764 0.7468 17 6 0.7442 4.0233 0.0285 18 6 1.3252 4.2130 2.4511 19 6 1.3942 5.7124 2.3169 20 6 2.5707 6.3786 2.6047 21 6 2.6355 7.7535 2.4769 22 6 1.5207 8.4632 2.0709 23 6 0.3426 7.7975 1.7886 24 6 0.2794 6.4221 1.9113 25 1 -0.3634 -1.0242 0.0844 26 1 -0.3633 0.5853 0.8448 27 1 -0.3633 0.4391 -0.9292 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8639 1.5761 -2.3351 31 1 3.5142 1.8613 2.1778 32 1 2.1519 2.1387 3.2898 33 1 2.3431 0.5585 2.4936 34 1 3.3659 3.6219 -0.2582 35 1 3.2198 5.0628 0.7766 36 1 3.8397 3.5388 1.4556 37 1 -0.2761 3.7714 0.3174 38 1 0.8292 5.1021 -0.1015 39 1 0.9903 3.5239 -0.9086 40 1 0.3100 3.9187 2.7175 41 1 2.0145 3.8853 3.2293 42 1 3.4402 5.8247 2.9261 43 1 3.5558 8.2737 2.6978 44 1 1.5703 9.5377 1.9746 45 1 -0.5284 8.3520 1.4718 46 1 -0.6409 5.9019 1.6904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:40 Heat of formation + Delta-G solvation = 16.264387 kcal Electronic energy + Delta-G solvation = -23005.998903 eV Core-core repulsion = 20088.063505 eV Total energy + Delta-G solvation = -2917.935397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01926 -39.46394 -35.92595 -34.16024 -32.87967 -31.77321 -31.28771 -29.39933 -28.22876 -27.25094 -25.94573 -24.25730 -23.26604 -22.57249 -21.05608 -19.31304 -19.00005 -17.43942 -17.10766 -16.40551 -16.11128 -16.03666 -15.64040 -15.16650 -14.86029 -14.53022 -14.33223 -14.18960 -13.86083 -13.77474 -13.52442 -13.27657 -13.18075 -13.01799 -12.89835 -12.61917 -12.42892 -12.32627 -11.99091 -11.97084 -11.78892 -11.72851 -11.60310 -11.53821 -11.37616 -11.23153 -10.84863 -10.53321 -9.69290 -9.43962 -8.73898 -8.24225 -6.18042 0.55222 0.59333 1.27362 1.31902 1.38538 2.33458 2.94299 3.10345 3.41895 3.98986 4.09708 4.12545 4.25581 4.27623 4.36457 4.43106 4.51753 4.59664 4.68010 4.69921 4.74419 4.78188 4.88253 4.92111 4.96387 4.99418 5.04748 5.09260 5.12942 5.20059 5.24187 5.27507 5.32022 5.35724 5.43668 5.52949 5.58186 5.62455 5.67515 5.70461 5.74139 5.81354 5.90002 6.22119 6.28342 6.52030 6.68951 6.84913 7.42640 8.91682 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.019021 B = 0.006362 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.698254 B = 4399.968090 C = 4836.914758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.172 3.828 4 H 0.043 0.957 5 C -0.508 4.508 6 H 0.049 0.951 7 C 0.025 3.975 8 N -0.946 5.946 9 Si 0.906 3.094 10 H -0.270 1.270 11 H -0.295 1.295 12 H -0.244 1.244 13 N -0.513 5.513 14 C 0.028 3.972 15 C 0.122 3.878 16 C -0.156 4.156 17 C -0.134 4.134 18 C -0.062 4.062 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.126 4.126 24 C -0.122 4.122 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.259 0.741 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 10.346 7.242 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.064 3.936 4 H 0.061 0.939 5 C -0.547 4.547 6 H 0.067 0.933 7 C -0.172 4.172 8 N -0.588 5.588 9 Si 0.732 3.268 10 H -0.196 1.196 11 H -0.221 1.221 12 H -0.168 1.168 13 N -0.236 5.236 14 C -0.120 4.120 15 C 0.032 3.968 16 C -0.214 4.214 17 C -0.192 4.192 18 C -0.100 4.100 19 C -0.078 4.078 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.144 4.144 24 C -0.140 4.140 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.630 10.205 7.219 17.770 hybrid contribution 1.585 0.047 -1.267 2.030 sum -11.045 10.252 5.951 16.202 Atomic orbital electron populations 1.21652 0.95030 1.00934 1.01484 1.21583 0.95867 0.97458 0.99594 1.19772 0.91789 0.92236 0.89774 0.93917 1.21808 0.92553 1.46836 0.93528 0.93261 1.25579 0.95195 0.95434 1.01001 1.70044 1.11112 1.52736 1.24879 0.86374 0.80813 0.79375 0.80267 1.19585 1.22142 1.16773 1.62669 1.52167 1.03962 1.04762 1.22332 0.95882 0.99976 0.93835 1.20783 0.93297 0.87882 0.94864 1.22467 0.97889 0.98854 1.02187 1.21924 0.99634 1.00406 0.97187 1.20655 1.02881 0.90231 0.96211 1.19908 0.94014 0.95399 0.98508 1.21192 0.97508 0.95085 1.01094 1.21360 0.99490 0.93956 1.00145 1.21407 0.93045 1.00855 0.99838 1.21431 0.98769 0.94344 0.99816 1.21274 0.98412 0.94615 0.99706 0.92821 0.91310 0.94327 0.94944 0.93338 0.93145 0.96474 0.90840 0.92720 0.93300 0.93845 0.94774 0.90719 0.91956 0.94999 0.89491 0.91296 0.87065 0.85058 0.84189 0.83986 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.85 71.98 0.71 -3.68 16 2 C -0.11 -4.33 5.42 30.59 0.17 -4.17 16 3 C 0.17 7.56 1.02 44.17 0.04 7.61 16 4 H 0.04 1.95 2.64 -2.38 -0.01 1.94 16 5 C -0.51 -26.91 5.30 25.60 0.14 -26.77 16 6 H 0.05 2.91 5.73 -2.91 -0.02 2.90 16 7 C 0.03 1.42 4.73 84.66 0.40 1.82 16 8 N -0.95 -58.08 13.96 21.45 0.30 -57.78 16 9 Si 0.91 43.81 26.41 68.60 1.81 45.62 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.24 -11.00 6.71 99.48 0.67 -10.33 16 13 N -0.51 -19.36 3.88 -851.86 -3.30 -22.66 16 14 C 0.03 1.04 8.11 127.69 1.04 2.08 16 15 C 0.12 4.26 0.48 3.53 0.00 4.26 16 16 C -0.16 -6.49 6.63 71.98 0.48 -6.01 16 17 C -0.13 -4.45 7.72 71.98 0.56 -3.89 16 18 C -0.06 -1.78 4.06 29.85 0.12 -1.66 16 19 C -0.08 -2.10 4.02 -19.86 -0.08 -2.18 16 20 C -0.13 -3.57 7.73 22.27 0.17 -3.40 16 21 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 22 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 23 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 24 C -0.12 -2.86 7.95 22.27 0.18 -2.68 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 2.17 7.61 -2.38 -0.02 2.15 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.96 6.74 -2.39 -0.02 1.95 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.02 0.74 4.27 -2.39 -0.01 0.73 16 32 H 0.07 2.28 5.99 -2.39 -0.01 2.27 16 33 H 0.05 2.01 6.75 -2.39 -0.02 1.99 16 34 H 0.05 2.40 4.82 -2.39 -0.01 2.39 16 35 H 0.04 1.67 5.70 -2.39 -0.01 1.65 16 36 H 0.03 1.51 6.07 -2.39 -0.01 1.50 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.93 6.37 -2.39 -0.02 1.92 16 39 H 0.03 1.20 5.87 -2.39 -0.01 1.18 16 40 H 0.09 2.25 8.09 -2.38 -0.02 2.23 16 41 H 0.07 1.99 6.19 -2.39 -0.01 1.98 16 42 H 0.11 3.14 8.04 -2.91 -0.02 3.11 16 43 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.13 2.70 8.03 -2.91 -0.02 2.68 16 Total: -1.00 -61.63 332.27 4.31 -57.32 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.92 Total: 24.00 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 4.59 Total: -46.49 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.00 Total: -80.45 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.81 Total: 45.62 kcal Total: -61.63 4.31 -57.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.585 kcal (2) G-P(sol) polarization free energy of solvation -61.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds