Wall clock time and date at job start Mon Mar 30 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 N 1.46902 * 109.46826 * 173.25598 * 3 2 1 5 5 C 1.46896 * 110.99934 * 193.94664 * 4 3 2 6 6 C 1.50702 * 109.47002 * 71.05280 * 5 4 3 7 7 H 1.08000 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00008 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99907 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99789 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46917 * 90.00860 * 10 8 6 12 12 H 1.48506 * 109.46974 * 210.00555 * 10 8 6 13 13 H 1.48499 * 109.47324 * 330.00654 * 10 8 6 14 14 C 1.46905 * 110.99954 * 69.99841 * 4 3 2 15 15 H 1.08998 * 109.47451 * 151.51420 * 14 4 3 16 16 C 1.52998 * 109.47486 * 31.51146 * 14 4 3 17 17 C 1.53003 * 109.46917 * 67.34527 * 16 14 4 18 18 C 1.53002 * 109.46658 * 271.51523 * 14 4 3 19 19 C 1.50697 * 109.47050 * 294.50795 * 18 14 4 20 20 C 1.38241 * 119.99646 * 275.31903 * 19 18 14 21 21 C 1.38240 * 119.99446 * 179.76504 * 20 19 18 22 22 C 1.38229 * 120.00320 * 0.51495 * 21 20 19 23 23 C 1.38237 * 119.99843 * 359.73978 * 22 21 20 24 24 C 1.38229 * 120.00261 * 95.59901 * 19 18 14 25 25 H 1.08995 * 109.47573 * 300.00232 * 1 2 3 26 26 H 1.09010 * 109.47225 * 60.00024 * 1 2 3 27 27 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47055 * 239.99788 * 2 1 3 29 29 H 1.08998 * 109.46857 * 119.99764 * 2 1 3 30 30 H 1.08996 * 109.47422 * 53.25791 * 3 2 1 31 31 H 1.08998 * 109.46929 * 293.25303 * 3 2 1 32 32 H 1.08998 * 109.47343 * 191.04999 * 5 4 3 33 33 H 1.09005 * 109.47657 * 311.05074 * 5 4 3 34 34 H 0.97000 * 120.00060 * 179.97438 * 9 8 6 35 35 H 1.08991 * 109.47447 * 187.34853 * 16 14 4 36 36 H 1.09001 * 109.47181 * 307.35287 * 16 14 4 37 37 H 1.09006 * 109.46598 * 52.59399 * 17 16 14 38 38 H 1.09002 * 109.47144 * 172.59425 * 17 16 14 39 39 H 1.08991 * 109.47353 * 292.59716 * 17 16 14 40 40 H 1.08994 * 109.47223 * 54.50715 * 18 14 4 41 41 H 1.09001 * 109.46884 * 174.50928 * 18 14 4 42 42 H 1.07993 * 120.00592 * 0.02562 * 20 19 18 43 43 H 1.08005 * 119.99488 * 180.23312 * 21 20 19 44 44 H 1.08004 * 120.00102 * 179.72270 * 22 21 20 45 45 H 1.08006 * 119.99755 * 179.97438 * 23 22 21 46 46 H 1.07999 * 120.00041 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4999 1.4457 0.1626 5 6 3.9894 2.7897 0.4971 6 6 3.5796 3.1377 1.9049 7 1 3.0119 2.4312 2.4923 8 6 3.9285 4.3584 2.4428 9 7 3.5712 4.6618 3.6715 10 14 4.9098 5.5806 1.4265 11 1 3.9786 6.4584 0.6732 12 1 5.7521 6.4090 2.3263 13 1 5.7788 4.8461 0.4723 14 6 4.1648 0.9277 -1.0405 15 1 5.1534 1.3775 -1.1316 16 6 3.3303 1.2763 -2.2746 17 6 3.3434 2.7914 -2.4877 18 6 4.3040 -0.5921 -0.9318 19 6 5.2356 -0.9313 0.2031 20 6 6.6021 -0.9476 -0.0057 21 6 7.4569 -1.2540 1.0366 22 6 6.9449 -1.5544 2.2849 23 6 5.5782 -1.5431 2.4924 24 6 4.7236 -1.2316 1.4514 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5815 1.9900 0.8235 31 1 1.7785 1.9203 -0.9442 32 1 5.0764 2.8103 0.4196 33 1 3.5621 3.5150 -0.1955 34 1 3.8170 5.5204 4.0501 35 1 3.7522 0.7826 -3.1499 36 1 2.3043 0.9392 -2.1265 37 1 4.3737 3.1470 -2.5043 38 1 2.8616 3.0290 -3.4361 39 1 2.8044 3.2773 -1.6745 40 1 3.3257 -1.0340 -0.7432 41 1 4.7078 -0.9876 -1.8639 42 1 7.0020 -0.7170 -0.9820 43 1 8.5246 -1.2631 0.8744 44 1 7.6125 -1.7981 3.0981 45 1 5.1781 -1.7783 3.4677 46 1 3.6559 -1.2229 1.6136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258849399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:48 Heat of formation + Delta-G solvation = 27.335237 kcal Electronic energy + Delta-G solvation = -22665.998430 eV Core-core repulsion = 19748.543101 eV Total energy + Delta-G solvation = -2917.455329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45941 -38.10612 -33.35548 -33.12694 -32.11224 -31.24282 -30.40998 -28.41037 -27.08289 -25.09081 -23.58655 -22.16492 -21.27910 -20.95039 -20.35117 -19.10217 -16.95913 -16.40891 -15.87966 -15.03257 -14.73011 -14.44410 -14.37215 -13.79435 -13.53740 -13.39732 -12.97098 -12.87922 -12.48499 -12.42108 -12.14361 -11.99738 -11.87616 -11.65748 -11.53839 -11.22838 -11.13277 -10.92041 -10.74324 -10.63863 -10.46979 -10.31492 -10.15172 -9.89819 -9.73471 -9.68519 -9.21325 -8.51684 -8.42989 -8.16344 -7.14997 -5.99823 -3.94833 1.84535 1.90595 3.29533 3.37824 3.40149 4.25732 4.46057 4.72860 5.07876 5.25338 5.31162 5.34478 5.39588 5.40409 5.44031 5.46279 5.52549 5.55844 5.69252 5.85820 5.94464 5.95616 5.98992 6.03434 6.10118 6.17528 6.18369 6.20346 6.21577 6.26703 6.43046 6.45712 6.54397 6.56439 6.61317 6.72294 6.81974 6.90275 6.99437 7.04084 7.09895 7.17441 7.49840 7.71712 8.03008 8.18830 8.74355 9.11100 9.63321 11.13708 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.011346 B = 0.007840 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.337364 B = 3570.634897 C = 4496.864778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.048 3.952 4 N -0.510 5.510 5 C 0.160 3.840 6 C -0.499 4.499 7 H 0.080 0.920 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.870 3.130 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.085 3.915 15 H 0.069 0.931 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.083 4.083 19 C -0.054 4.054 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.084 4.084 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.022 0.978 33 H -0.009 1.009 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -11.668 -10.178 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.080 4.080 4 N -0.233 5.233 5 C 0.034 3.966 6 C -0.538 4.538 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.697 3.303 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.024 4.024 15 H 0.087 0.913 16 C -0.195 4.195 17 C -0.218 4.218 18 C -0.120 4.120 19 C -0.055 4.055 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.137 4.137 24 C -0.102 4.102 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.009 0.991 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.019 -11.817 -9.638 15.283 hybrid contribution 0.508 1.537 -0.995 1.900 sum 1.527 -10.281 -10.633 14.869 Atomic orbital electron populations 1.21758 0.96662 1.00767 1.01661 1.21874 0.94522 0.98183 1.01812 1.22284 0.89239 0.95565 1.00907 1.62094 1.03767 1.26460 1.30955 1.20331 0.95069 0.84432 0.96754 1.21052 1.34589 1.01305 0.96829 0.90240 1.24875 0.95795 0.97890 0.94784 1.69891 1.47184 1.22813 1.14320 0.86945 0.80874 0.81844 0.80594 1.20471 1.21307 1.19249 1.21766 0.97773 0.93967 0.88938 0.91318 1.22276 1.02040 0.96584 0.98583 1.22045 1.01930 0.96352 1.01453 1.21012 0.99335 0.96312 0.95350 1.19668 0.93427 0.97028 0.95328 1.20930 0.93281 1.01600 0.98716 1.20958 0.98958 1.01026 0.93497 1.20993 0.95405 1.01728 0.96855 1.21104 0.93570 1.00241 0.98771 1.20981 0.99821 0.97270 0.92160 0.92576 0.93372 0.93370 0.92070 0.91383 0.89883 0.94587 0.95955 0.99113 0.92856 0.92614 0.90511 0.93021 0.93500 0.91184 0.89735 0.92041 0.87076 0.87040 0.86990 0.86683 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.55 16 2 C -0.13 -1.83 4.41 -26.73 -0.12 -1.94 16 3 C 0.05 0.85 4.06 -3.82 -0.02 0.84 16 4 N -0.51 -9.92 3.95 -228.08 -0.90 -10.82 16 5 C 0.16 3.79 3.24 -4.98 -0.02 3.77 16 6 C -0.50 -14.02 8.94 -34.44 -0.31 -14.32 16 7 H 0.08 2.44 7.81 -52.49 -0.41 2.03 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 10 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 13 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 14 C 0.09 1.38 1.82 -67.71 -0.12 1.26 16 15 H 0.07 1.23 7.41 -51.93 -0.38 0.84 16 16 C -0.16 -2.20 4.73 -26.73 -0.13 -2.33 16 17 C -0.16 -2.43 8.53 37.16 0.32 -2.12 16 18 C -0.08 -1.17 4.70 -27.88 -0.13 -1.30 16 19 C -0.05 -0.86 4.89 -104.63 -0.51 -1.37 16 20 C -0.13 -1.92 9.72 -39.58 -0.38 -2.31 16 21 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 22 C -0.13 -1.97 10.05 -39.59 -0.40 -2.36 16 23 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.08 -1.39 9.58 -39.59 -0.38 -1.77 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.80 4.58 -51.93 -0.24 0.57 16 29 H 0.07 1.05 6.76 -51.93 -0.35 0.70 16 30 H 0.08 1.74 6.99 -51.93 -0.36 1.37 16 31 H 0.04 0.61 4.17 -51.93 -0.22 0.39 16 32 H 0.02 0.56 6.70 -51.93 -0.35 0.21 16 33 H -0.01 -0.20 4.78 -51.93 -0.25 -0.45 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 35 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 36 H 0.08 1.05 4.64 -51.93 -0.24 0.81 16 37 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.22 4.52 -51.93 -0.23 0.98 16 40 H 0.08 1.15 4.38 -51.93 -0.23 0.92 16 41 H 0.06 0.76 8.11 -51.93 -0.42 0.33 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 45 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 46 H 0.12 1.96 6.67 -52.49 -0.35 1.60 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -30.12 343.15 -9.77 -39.89 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.43 Total: 3.84 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.72 Total: -28.17 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.13 Total: -37.84 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.12 -9.77 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258849399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.222 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds