Wall clock time and date at job start Mon Mar 30 2020 01:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 N 1.29046 * 124.90376 * 90.00042 * 12 11 10 14 14 C 1.31818 * 117.11339 * 179.97438 * 13 12 11 15 15 Br 1.89097 * 122.75722 * 179.97438 * 14 13 12 16 16 C 1.33700 * 114.48120 * 359.97438 * 14 13 12 17 17 S 1.70970 * 124.91118 * 269.69958 * 12 11 10 18 18 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 20 20 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 21 21 H 1.00904 * 110.99860 * 56.04901 * 10 9 7 22 22 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 23 23 H 1.08995 * 109.47296 * 60.00089 * 11 10 9 24 24 H 1.08000 * 126.02946 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5151 -6.0259 -0.0006 13 7 3.0105 -6.5741 1.0574 14 6 3.8848 -7.5441 0.8782 15 35 4.7098 -8.4563 2.3145 16 6 4.1404 -7.8300 -0.4026 17 16 3.1640 -6.7574 -1.4030 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8407 -3.5486 0.7809 22 1 0.8810 -4.9812 0.8903 23 1 0.8804 -4.9817 -0.8896 24 1 4.8227 -8.5867 -0.7607 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308723353.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:18 Heat of formation + Delta-G solvation = 44.200467 kcal Electronic energy + Delta-G solvation = -11335.772948 eV Core-core repulsion = 9036.182996 eV Total energy + Delta-G solvation = -2299.589951 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 275.963 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.74526 -35.56772 -32.77991 -31.75862 -29.77831 -27.85378 -25.50622 -22.96668 -21.51812 -19.80783 -18.13863 -16.51950 -15.59442 -15.07554 -14.87800 -14.41031 -13.91497 -13.34835 -12.95786 -12.24941 -11.77397 -11.54793 -11.35683 -11.04278 -10.78801 -10.70845 -10.49395 -10.05670 -9.72039 -9.51132 -9.27555 -8.78017 -8.52888 -7.51294 -6.08035 -4.10376 0.55485 0.86277 1.42733 2.01796 2.53660 3.30854 3.36661 3.40837 4.25487 4.41709 5.03263 5.04780 5.28042 5.34010 5.52317 5.87868 5.97150 7.07062 7.30195 7.50829 7.68351 8.02110 8.21161 8.45273 8.97656 9.54743 11.03063 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.003956 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.326141 B = 7076.510921 C = 7482.507457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.128 3.872 12 C 0.081 3.919 13 N -0.464 5.464 14 C 0.070 3.930 15 Br 0.008 6.992 16 C -0.247 4.247 17 S 0.188 5.812 18 H 0.262 0.738 19 H 0.032 0.968 20 H -0.008 1.008 21 H 0.337 0.663 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 -19.353 0.275 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.005 4.005 12 C -0.199 4.199 13 N -0.179 5.179 14 C -0.142 4.142 15 Br 0.090 6.910 16 C -0.390 4.390 17 S 0.442 5.558 18 H 0.072 0.928 19 H 0.050 0.950 20 H 0.010 0.990 21 H 0.154 0.846 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.871 -19.196 -0.445 20.752 hybrid contribution 0.359 0.614 1.369 1.542 sum 8.230 -18.583 0.923 20.344 Atomic orbital electron populations 1.69955 1.06082 1.26955 1.50636 1.24976 0.94896 0.99406 0.95170 0.86450 0.79695 0.82820 0.78161 1.20557 1.21239 1.19812 1.21130 0.93584 0.89996 1.50766 0.91855 1.19620 0.90476 0.86835 0.96241 1.60843 1.21173 0.99877 1.49565 1.20567 0.91113 0.86372 1.02461 1.27333 1.01338 1.00907 0.90340 1.66114 1.10642 1.08954 1.32213 1.21562 1.01167 0.99421 0.92082 1.96725 1.77390 1.72608 1.44270 1.26999 1.08879 1.07938 0.95174 1.84121 1.34035 1.25915 1.11717 0.92802 0.94996 0.99003 0.84608 0.92444 0.89082 0.79937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.63 14 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 14 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 14 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 14 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 14 7 C -0.52 -14.42 9.32 -34.44 -0.32 -14.74 14 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 14 9 C 0.19 4.95 5.44 -4.97 -0.03 4.92 14 10 N -0.68 -14.35 6.48 -116.34 -0.75 -15.11 14 11 C 0.13 2.20 6.26 -4.97 -0.03 2.17 14 12 C 0.08 1.27 6.90 -13.45 -0.09 1.17 14 13 N -0.46 -7.63 10.55 -10.26 -0.11 -7.74 14 14 C 0.07 0.99 7.18 -19.15 -0.14 0.85 14 15 Br 0.01 0.09 33.99 -68.01 -2.31 -2.22 14 16 C -0.25 -2.90 11.20 29.14 0.33 -2.57 14 17 S 0.19 2.33 23.18 -107.50 -2.49 -0.16 14 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 14 19 H 0.03 0.85 8.14 -51.93 -0.42 0.43 14 20 H -0.01 -0.21 8.14 -51.93 -0.42 -0.63 14 21 H 0.34 7.15 8.71 -39.29 -0.34 6.80 14 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 14 23 H 0.09 1.45 8.14 -51.93 -0.42 1.02 14 24 H 0.18 1.56 8.06 -52.49 -0.42 1.14 14 LS Contribution 255.56 15.07 3.85 3.85 Total: -1.00 -29.65 255.56 -8.48 -38.13 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -2.00 Total: -0.94 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.38 Total: -6.68 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.13 Total: -48.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.49 Total: -0.16 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -2.31 Total: -2.22 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.65 -8.48 -38.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308723353.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.334 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds