Wall clock time and date at job start Mon Mar 30 2020 01:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 N 1.29046 * 124.90376 * 90.00042 * 12 11 10 14 14 C 1.31818 * 117.11339 * 179.97438 * 13 12 11 15 15 Br 1.89097 * 122.75722 * 179.97438 * 14 13 12 16 16 C 1.33700 * 114.48120 * 359.97438 * 14 13 12 17 17 S 1.70970 * 124.91118 * 269.69958 * 12 11 10 18 18 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 20 20 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 21 21 H 1.00904 * 110.99860 * 56.04901 * 10 9 7 22 22 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 23 23 H 1.08995 * 109.47296 * 60.00089 * 11 10 9 24 24 H 1.08000 * 126.02946 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5151 -6.0259 -0.0006 13 7 3.0105 -6.5741 1.0574 14 6 3.8848 -7.5441 0.8782 15 35 4.7098 -8.4563 2.3145 16 6 4.1404 -7.8300 -0.4026 17 16 3.1640 -6.7574 -1.4030 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8407 -3.5486 0.7809 22 1 0.8810 -4.9812 0.8903 23 1 0.8804 -4.9817 -0.8896 24 1 4.8227 -8.5867 -0.7607 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308723353.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:18 Heat of formation + Delta-G solvation = 23.129194 kcal Electronic energy + Delta-G solvation = -11336.686667 eV Core-core repulsion = 9036.182996 eV Total energy + Delta-G solvation = -2300.503670 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 275.963 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.85308 -37.25400 -34.71432 -32.98772 -31.01717 -29.36714 -27.19006 -24.38520 -23.37517 -20.90671 -19.34903 -18.45916 -16.93026 -16.57123 -16.43284 -15.97874 -15.16226 -14.89701 -14.45206 -14.02224 -13.28049 -13.17630 -12.71382 -12.66946 -12.61765 -12.12243 -11.93623 -11.45671 -11.38112 -10.82272 -10.66008 -10.55378 -9.82058 -9.28346 -8.22829 -6.33606 -0.50173 -0.11498 0.34864 1.00596 1.41538 1.43780 1.44282 1.55688 2.40828 3.07817 3.11261 3.68435 3.93116 4.16555 4.31590 4.51986 4.70798 5.04011 5.22934 5.58258 5.96917 6.28711 6.43266 6.55380 6.83504 7.36883 8.88655 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.003956 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.326141 B = 7076.510921 C = 7482.507457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.678 5.678 11 C 0.132 3.868 12 C 0.043 3.957 13 N -0.488 5.488 14 C 0.038 3.962 15 Br 0.020 6.980 16 C -0.224 4.224 17 S 0.244 5.756 18 H 0.266 0.734 19 H 0.014 0.986 20 H -0.033 1.033 21 H 0.335 0.665 22 H 0.048 0.952 23 H 0.102 0.898 24 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.512 -19.985 -0.543 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.310 5.310 11 C 0.000 4.000 12 C -0.236 4.236 13 N -0.204 5.204 14 C -0.173 4.173 15 Br 0.102 6.898 16 C -0.367 4.367 17 S 0.498 5.502 18 H 0.075 0.925 19 H 0.032 0.968 20 H -0.016 1.016 21 H 0.152 0.848 22 H 0.066 0.934 23 H 0.120 0.880 24 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 9.397 -19.849 -1.266 21.997 hybrid contribution -0.081 0.671 1.592 1.730 sum 9.316 -19.178 0.327 21.323 Atomic orbital electron populations 1.70071 1.07670 1.28091 1.51303 1.25891 0.95774 1.03199 0.94501 0.85348 0.78435 0.78087 0.78520 1.19654 1.20695 1.19064 1.21492 0.93792 0.91352 1.50942 0.91895 1.19268 0.90467 0.88049 0.94103 1.60690 1.20387 1.00511 1.49373 1.20465 0.91633 0.85298 1.02615 1.26878 1.02660 1.01784 0.92259 1.66050 1.11235 1.09726 1.33421 1.21819 1.01942 0.99974 0.93569 1.96721 1.76946 1.72043 1.44050 1.27501 1.07658 1.07243 0.94258 1.83887 1.32598 1.24498 1.09209 0.92517 0.96768 1.01558 0.84831 0.93420 0.87961 0.76381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.11 14 2 C 0.00 0.28 5.46 84.65 0.46 0.74 14 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 14 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 14 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 14 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 14 7 C -0.54 -30.36 9.32 25.60 0.24 -30.12 14 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 14 9 C 0.21 10.92 5.44 85.56 0.47 11.38 14 10 N -0.68 -28.96 6.48 -521.97 -3.38 -32.34 14 11 C 0.13 4.62 6.26 85.56 0.54 5.15 14 12 C 0.04 1.31 6.90 88.52 0.61 1.92 14 13 N -0.49 -15.71 10.55 -186.38 -1.97 -17.68 14 14 C 0.04 1.02 7.18 83.66 0.60 1.62 14 15 Br 0.02 0.46 33.99 -20.37 -0.69 -0.23 14 16 C -0.22 -4.57 11.20 66.79 0.75 -3.82 14 17 S 0.24 5.48 23.18 -56.49 -1.31 4.17 14 18 H 0.27 14.84 8.31 -92.71 -0.77 14.07 14 19 H 0.01 0.79 8.14 -2.38 -0.02 0.77 14 20 H -0.03 -1.88 8.14 -2.39 -0.02 -1.90 14 21 H 0.34 14.46 8.71 -89.69 -0.78 13.68 14 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 14 23 H 0.10 3.26 8.14 -2.39 -0.02 3.24 14 24 H 0.22 2.75 8.06 -2.91 -0.02 2.72 14 Total: -1.00 -63.43 255.56 -0.93 -64.36 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 0.44 Total: 4.00 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 3.66 Total: -13.12 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -5.06 Total: -105.12 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.31 Total: 4.17 kcal Atomic # 35 Polarization: 0.46 SS G_CDS: -0.69 Total: -0.23 kcal Total: -63.43 -0.93 -64.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308723353.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.490 kcal (2) G-P(sol) polarization free energy of solvation -63.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds