Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86803 * 120.00358 * 2 1 4 4 H 1.48495 * 109.47048 * 239.99884 * 3 2 1 5 5 H 1.48503 * 109.46743 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47182 * 119.99587 * 3 2 1 7 7 C 1.38756 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99801 * 180.02562 * 7 2 1 9 9 O 1.34917 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.34312 * 116.99747 * 180.02562 * 9 7 2 11 11 O 1.21218 * 120.00204 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00240 * 180.02562 * 10 9 7 13 13 F 1.39895 * 109.47268 * 84.99883 * 12 10 9 14 14 F 1.39901 * 109.47072 * 324.99557 * 12 10 9 15 15 C 1.50700 * 109.47171 * 204.99881 * 12 10 9 16 16 C 1.38239 * 119.98824 * 270.29552 * 15 12 10 17 17 C 1.38212 * 120.01553 * 180.25745 * 16 15 12 18 18 C 1.38361 * 119.98341 * 359.46433 * 17 16 15 19 19 Cl 1.73597 * 120.00859 * 180.27890 * 18 17 16 20 20 C 1.38346 * 119.97306 * 0.25744 * 18 17 16 21 21 C 1.38210 * 119.98768 * 0.02562 * 20 18 17 22 22 H 0.97011 * 119.99707 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99430 * 359.97438 * 16 15 12 24 24 H 1.08002 * 120.01126 * 179.75014 * 17 16 15 25 25 H 1.08002 * 120.00348 * 180.02562 * 20 18 17 26 26 H 1.08002 * 119.99295 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1022 1.6963 -1.2124 5 1 1.2835 2.7464 -0.0006 6 1 3.1022 1.6964 1.2126 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3334 -2.3701 0.0016 10 6 2.0649 -3.4965 0.0026 11 8 3.2754 -3.4332 0.0021 12 6 1.3807 -4.8393 0.0032 13 9 1.0671 -5.2035 -1.3106 14 9 0.2061 -4.7638 0.7593 15 6 2.2998 -5.8711 0.6047 16 6 3.1767 -6.5702 -0.2035 17 6 4.0161 -7.5204 0.3467 18 6 3.9864 -7.7640 1.7084 19 17 5.0456 -8.9522 2.4012 20 6 3.1126 -7.0599 2.5175 21 6 2.2696 -6.1141 1.9652 22 1 -0.4850 0.8402 -0.0004 23 1 3.2027 -6.3772 -1.2659 24 1 4.6984 -8.0695 -0.2854 25 1 3.0893 -7.2493 3.5805 26 1 1.5872 -5.5646 2.5968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318015958.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = -151.520038 kcal Electronic energy + Delta-G solvation = -18765.069534 eV Core-core repulsion = 15085.287053 eV Total energy + Delta-G solvation = -3679.782481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.015 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.82497 -46.84619 -39.53372 -38.93684 -36.65409 -35.51257 -32.38823 -31.78904 -31.20293 -27.40662 -25.29533 -22.97594 -22.50165 -20.47040 -18.24664 -17.82159 -17.72339 -17.25635 -16.40658 -15.45737 -15.19527 -14.76900 -14.48325 -14.39139 -13.77455 -13.65500 -13.57511 -13.44563 -13.06158 -12.87791 -12.34224 -11.88705 -11.71863 -11.59064 -11.38464 -11.28286 -10.96105 -10.64160 -10.57108 -10.08205 -9.36667 -9.13903 -8.87390 -8.77763 -6.61756 -4.30576 0.85528 1.19375 1.93842 2.76724 3.01282 3.12216 3.18310 3.26778 3.46722 3.90836 4.13030 4.53940 4.64579 4.76310 4.88410 5.04800 5.19958 5.41796 5.47165 5.83035 5.95284 6.06267 6.20858 6.31815 6.59058 7.16481 7.67416 8.32480 8.83394 9.48177 10.53816 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.030571 B = 0.004595 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.681812 B = 6091.480163 C = 6466.060537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.047 3.953 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.386 4.386 8 H 0.102 0.898 9 O -0.182 6.182 10 C 0.349 3.651 11 O -0.518 6.518 12 C 0.371 3.629 13 F -0.178 7.178 14 F -0.176 7.176 15 C -0.125 4.125 16 C -0.055 4.055 17 C -0.114 4.114 18 C -0.019 4.019 19 Cl -0.071 7.071 20 C -0.113 4.113 21 C -0.067 4.067 22 H 0.276 0.724 23 H 0.142 0.858 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -13.233 2.967 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.160 4.160 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.461 4.461 8 H 0.120 0.880 9 O -0.087 6.087 10 C 0.192 3.808 11 O -0.415 6.415 12 C 0.333 3.667 13 F -0.159 7.159 14 F -0.156 7.156 15 C -0.127 4.127 16 C -0.073 4.073 17 C -0.132 4.132 18 C -0.046 4.046 19 Cl -0.042 7.042 20 C -0.132 4.132 21 C -0.085 4.085 22 H 0.086 0.914 23 H 0.160 0.840 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.932 -13.146 3.013 14.360 hybrid contribution 0.265 0.662 -0.047 0.714 sum 5.197 -12.484 2.966 13.844 Atomic orbital electron populations 1.70006 1.06188 1.28540 1.43487 1.25489 0.95928 0.99185 0.95412 0.85630 0.78671 0.78616 0.79644 1.19140 1.20062 1.19138 1.21366 0.92689 0.79186 1.52897 0.88026 1.83908 1.39089 1.13077 1.72580 1.22844 0.87133 0.86702 0.84113 1.90628 1.14088 1.86543 1.50256 1.18904 0.81155 0.91520 0.75157 1.93050 1.93490 1.92537 1.36833 1.93070 1.49935 1.97073 1.75545 1.19956 0.99479 0.97859 0.95357 1.20881 0.92627 0.93118 1.00712 1.20973 1.00142 0.99045 0.93066 1.21034 0.95305 0.94485 0.93754 1.98366 1.64879 1.56214 1.84772 1.20958 0.95565 0.96359 1.00299 1.20945 0.97780 0.96189 0.93575 0.91424 0.84041 0.84235 0.84199 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.23 13.67 55.48 0.76 -23.47 15 2 C 0.05 1.28 5.49 -17.53 -0.10 1.19 15 3 Si 0.95 20.49 29.55 -169.99 -5.02 15.46 15 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 15 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 7 C -0.39 -11.16 9.64 30.92 0.30 -10.86 15 8 H 0.10 2.90 6.86 -52.49 -0.36 2.54 15 9 O -0.18 -5.23 9.58 -20.70 -0.20 -5.43 15 10 C 0.35 8.73 7.28 36.01 0.26 8.99 15 11 O -0.52 -13.51 15.46 -19.06 -0.29 -13.81 15 12 C 0.37 7.57 2.26 -29.03 -0.07 7.50 15 13 F -0.18 -3.52 16.20 2.25 0.04 -3.48 15 14 F -0.18 -3.59 16.06 2.25 0.04 -3.55 15 15 C -0.13 -2.14 4.39 -104.62 -0.46 -2.60 15 16 C -0.06 -0.82 9.35 -39.59 -0.37 -1.19 15 17 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 15 18 C -0.02 -0.24 6.32 -39.50 -0.25 -0.49 15 19 Cl -0.07 -0.77 28.96 -51.86 -1.50 -2.27 15 20 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 15 21 C -0.07 -0.99 9.40 -39.59 -0.37 -1.37 15 22 H 0.28 7.16 8.31 -40.82 -0.34 6.82 15 23 H 0.14 1.97 7.61 -52.48 -0.40 1.57 15 24 H 0.14 1.39 8.06 -52.49 -0.42 0.97 15 25 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.14 2.00 7.60 -52.49 -0.40 1.60 15 LS Contribution 271.08 15.07 4.09 4.09 Total: -1.00 -31.04 271.08 -5.07 -36.11 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -1.14 Total: -1.19 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.83 Total: -2.47 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.76 Total: -23.47 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.49 Total: -19.23 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.07 Total: -7.03 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.04 -5.07 -36.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318015958.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.408 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds