Wall clock time and date at job start Mon Mar 30 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31399 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48499 * 109.46830 * 270.00134 * 3 2 1 5 5 H 1.48497 * 109.47263 * 29.99656 * 3 2 1 6 6 H 1.48493 * 109.47680 * 150.00141 * 3 2 1 7 7 C 1.39009 * 120.00439 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00626 * 179.97438 * 7 2 1 9 9 N 1.36884 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99936 * 179.97438 * 9 7 2 11 11 O 1.21741 * 119.99623 * 359.97438 * 10 9 7 12 12 C 1.46453 * 119.99843 * 179.97438 * 10 9 7 13 13 C 1.36775 * 125.46167 * 179.97438 * 12 10 9 14 14 C 1.37445 * 113.27672 * 180.02562 * 13 12 10 15 15 C 1.33845 * 115.11160 * 0.02562 * 14 13 12 16 16 S 1.76200 * 124.51544 * 180.02562 * 15 14 13 17 17 N 1.65593 * 107.21705 * 90.00125 * 16 15 14 18 18 O 1.42101 * 106.39994 * 203.53992 * 16 15 14 19 19 O 1.42097 * 106.39951 * 336.45994 * 16 15 14 20 20 S 1.70614 * 110.96958 * 359.97438 * 15 14 13 21 21 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 22 22 H 0.97006 * 120.00431 * 359.97438 * 9 7 2 23 23 H 1.08001 * 123.35846 * 0.29341 * 13 12 10 24 24 H 1.08003 * 122.43802 * 179.97438 * 14 13 12 25 25 H 0.97001 * 120.00091 * 150.00208 * 17 16 15 26 26 H 0.97002 * 120.00487 * 329.99338 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4954 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5455 1.4403 0.6999 7 6 2.0091 -1.2038 0.0005 8 1 3.0891 -1.2038 0.0001 9 7 1.3247 -2.3893 0.0005 10 6 1.9986 -3.5565 0.0005 11 8 3.2160 -3.5564 0.0001 12 6 1.2663 -4.8248 0.0011 13 6 1.8344 -6.0690 0.0007 14 6 0.9114 -7.0874 0.0008 15 6 -0.3681 -6.6945 0.0008 16 16 -1.7488 -7.7892 0.0016 17 7 -2.1326 -8.0928 1.5836 18 8 -2.8397 -7.0595 -0.5430 19 8 -1.2868 -9.0180 -0.5422 20 16 -0.4840 -4.9923 0.0013 21 1 -0.4850 0.8400 0.0004 22 1 0.3546 -2.3893 0.0005 23 1 2.9016 -6.2346 0.0045 24 1 1.1977 -8.1288 0.0001 25 1 -3.0505 -8.2845 1.8318 26 1 -1.4395 -8.0791 2.2621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322509908.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:12 Heat of formation + Delta-G solvation = -113.906459 kcal Electronic energy + Delta-G solvation = -16428.169405 eV Core-core repulsion = 13338.194815 eV Total energy + Delta-G solvation = -3089.974590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.007 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47972 -38.67790 -38.16909 -37.00213 -36.21714 -34.08365 -33.59486 -31.24131 -27.73602 -25.85256 -22.60510 -21.47581 -20.64488 -20.06350 -19.42062 -18.40092 -18.10888 -17.25613 -17.02378 -16.51856 -16.22651 -15.85240 -15.80874 -15.16478 -14.37023 -14.17031 -13.73548 -13.52200 -13.29896 -13.24087 -13.17114 -13.01824 -12.69253 -12.60806 -12.13916 -12.04374 -11.72140 -11.38511 -10.80296 -10.42928 -10.24897 -9.74929 -8.68690 -6.12673 -1.02099 -0.64621 0.27146 0.64516 1.07950 1.40248 1.42689 1.53847 2.14179 2.18280 2.18849 2.60827 2.85389 3.08652 3.65029 4.04596 4.13108 4.30447 4.64271 4.94164 5.20276 5.23830 5.27266 5.75214 6.29054 6.36134 6.85705 7.19088 7.75000 8.47695 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.037727 B = 0.004588 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.001384 B = 6101.953430 C = 6661.028975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.005 4.005 3 Si 1.005 2.995 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.336 4.336 8 H 0.094 0.906 9 N -0.541 5.541 10 C 0.476 3.524 11 O -0.622 6.622 12 C -0.201 4.201 13 C -0.117 4.117 14 C 0.009 3.991 15 C -0.838 4.838 16 S 2.762 3.238 17 N -1.228 6.228 18 O -0.989 6.989 19 O -0.976 6.976 20 S 0.303 5.697 21 H 0.289 0.711 22 H 0.396 0.604 23 H 0.162 0.838 24 H 0.192 0.808 25 H 0.433 0.567 26 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -12.984 4.470 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.209 4.209 3 Si 0.826 3.174 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.112 0.888 9 N -0.174 5.174 10 C 0.265 3.735 11 O -0.512 6.512 12 C -0.325 4.325 13 C -0.150 4.150 14 C -0.027 4.027 15 C -1.040 5.040 16 S 2.844 3.156 17 N -0.909 5.909 18 O -0.979 6.979 19 O -0.965 6.965 20 S 0.573 5.427 21 H 0.099 0.901 22 H 0.231 0.769 23 H 0.180 0.820 24 H 0.209 0.791 25 H 0.267 0.733 26 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.165 -12.033 3.540 14.445 hybrid contribution 1.616 0.265 0.551 1.728 sum -5.549 -11.767 4.091 13.638 Atomic orbital electron populations 1.69649 1.07236 1.30676 1.46237 1.26325 0.96643 1.03061 0.94841 0.84755 0.77983 0.75543 0.79084 1.19202 1.18932 1.19185 1.19941 0.93520 0.83204 1.49892 0.88848 1.41992 1.09436 1.05067 1.60922 1.17093 0.87165 0.82919 0.86354 1.90631 1.14120 1.87079 1.59371 1.25500 0.99286 0.98427 1.09272 1.21089 1.02675 0.89292 1.01958 1.20007 0.88511 1.02365 0.91815 1.35123 1.21337 1.15847 1.31702 0.99801 0.70775 0.72249 0.72766 1.52679 1.20746 1.90022 1.27433 1.93578 1.52402 1.73830 1.78087 1.93583 1.82057 1.43300 1.77590 1.83185 0.99550 0.95468 1.64477 0.90150 0.76900 0.82040 0.79098 0.73317 0.73804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.18 13.05 21.68 0.28 -45.89 15 2 C -0.01 -0.28 5.50 84.94 0.47 0.19 15 3 Si 1.00 40.18 29.55 68.60 2.03 42.21 15 4 H -0.27 -10.37 7.11 99.48 0.71 -9.67 15 5 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 15 7 C -0.34 -18.49 9.68 84.09 0.81 -17.67 15 8 H 0.09 5.40 7.15 -2.91 -0.02 5.38 15 9 N -0.54 -28.01 5.27 -310.81 -1.64 -29.65 15 10 C 0.48 23.72 7.73 86.38 0.67 24.39 15 11 O -0.62 -35.05 16.41 -4.48 -0.07 -35.13 15 12 C -0.20 -7.83 6.45 24.07 0.16 -7.67 15 13 C -0.12 -3.73 10.02 21.74 0.22 -3.51 15 14 C 0.01 0.23 9.77 21.08 0.21 0.44 15 15 C -0.84 -21.44 6.35 66.82 0.42 -21.02 15 16 S 2.76 59.32 6.41 -56.49 -0.36 58.96 15 17 N -1.23 -14.44 9.52 37.02 0.35 -14.09 15 18 O -0.99 -27.97 17.82 -128.00 -2.28 -30.25 15 19 O -0.98 -25.18 17.74 -128.00 -2.27 -27.45 15 20 S 0.30 9.71 21.91 -56.49 -1.24 8.47 15 21 H 0.29 13.61 8.31 -92.71 -0.77 12.84 15 22 H 0.40 19.45 7.00 -92.70 -0.65 18.80 15 23 H 0.16 4.95 8.06 -2.91 -0.02 4.93 15 24 H 0.19 3.24 8.02 -2.91 -0.02 3.22 15 25 H 0.43 3.31 8.96 -96.75 -0.87 2.44 15 26 H 0.43 3.12 8.96 -96.74 -0.87 2.25 15 Total: -1.00 -73.34 270.98 -3.35 -76.69 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -1.10 Total: 20.97 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 2.95 Total: -24.86 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -1.00 Total: -89.62 kcal Atomic # 8 Polarization: -88.20 SS G_CDS: -4.63 Total: -92.82 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: 69.03 SS G_CDS: -1.60 Total: 67.43 kcal Total: -73.34 -3.35 -76.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322509908.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.215 kcal (2) G-P(sol) polarization free energy of solvation -73.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds