Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81398 * 103.00122 * 2 1 4 4 C 1.50704 * 109.47083 * 180.02562 * 3 2 1 5 5 N 1.30077 * 126.20744 * 89.97341 * 4 3 2 6 6 N 1.28652 * 109.56021 * 180.02562 * 5 4 3 7 7 C 1.31142 * 109.31051 * 359.97438 * 6 5 4 8 8 S 1.76208 * 126.37959 * 180.02562 * 7 6 5 9 9 C 1.80998 * 99.99889 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47161 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47066 * 60.00373 * 10 9 8 12 12 O 1.42903 * 109.47446 * 300.00249 * 10 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 O 1.34631 * 107.24078 * 0.26551 * 7 6 5 22 22 H 1.09003 * 109.47600 * 300.00448 * 1 2 3 23 23 H 1.08997 * 109.47311 * 60.00120 * 1 2 3 24 24 H 1.08994 * 109.47448 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47271 * 60.00012 * 3 2 1 26 26 H 1.08997 * 109.46797 * 299.99580 * 3 2 1 27 27 H 1.09004 * 109.46826 * 60.00137 * 9 8 7 28 28 H 1.09000 * 109.47766 * 300.00468 * 9 8 7 29 29 H 0.96697 * 113.99557 * 300.00558 * 12 10 9 30 30 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4826 2.0235 -1.0505 6 7 5.7075 2.1620 -0.6825 7 6 5.7685 2.1695 0.6275 8 16 7.2253 2.3351 1.6050 9 6 8.4676 2.4761 0.2962 10 6 9.8539 2.6343 0.9239 11 1 10.0744 1.7638 1.5418 12 8 9.8788 3.8117 1.7332 13 6 10.8882 2.7523 -0.1658 14 1 10.5868 2.7184 -1.2024 15 6 12.2185 2.9100 0.1605 16 7 13.1205 3.0185 -0.7904 17 14 12.7396 2.9693 1.9534 18 1 13.0429 1.5948 2.4264 19 1 13.9508 3.8180 2.0889 20 1 11.6397 3.5425 2.7699 21 8 4.5115 2.0218 1.0864 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8031 2.2371 0.8900 26 1 1.8032 2.2370 -0.8900 27 1 8.2473 3.3468 -0.3215 28 1 8.4483 1.5782 -0.3215 29 1 9.6906 4.6266 1.2479 30 1 14.0564 3.1290 -0.5608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322875855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -4.162746 kcal Electronic energy + Delta-G solvation = -16224.681750 eV Core-core repulsion = 13275.299099 eV Total energy + Delta-G solvation = -2949.382651 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.10703 -36.53929 -36.16297 -33.19101 -32.39999 -30.29329 -29.58038 -28.55081 -25.77041 -24.06058 -22.77148 -21.04696 -18.51938 -17.70445 -17.56845 -16.87118 -16.29538 -15.28150 -15.06496 -14.67603 -14.61905 -14.52227 -14.34242 -13.83727 -13.36971 -13.04574 -12.90967 -12.47666 -12.06201 -11.93322 -11.77341 -11.40508 -11.11463 -10.76942 -10.72958 -10.36774 -10.14516 -10.08304 -9.22849 -8.79284 -8.55111 -8.17701 -7.69847 -6.24705 -4.39568 0.47391 0.73353 1.40718 1.96269 2.28049 2.41354 2.63799 3.32110 3.42248 3.65671 3.86599 4.42268 4.43729 4.65777 4.67672 4.74588 4.95232 5.06138 5.17526 5.22880 5.38907 5.52808 5.57693 5.70004 6.35144 6.97523 7.31678 8.13626 8.15664 8.64192 8.82651 9.35721 10.84950 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.054594 B = 0.003330 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.751960 B = 8406.607524 C = 8619.086315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.224 6.224 3 C 0.009 3.991 4 C 0.152 3.848 5 N -0.251 5.251 6 N -0.291 5.291 7 C 0.151 3.849 8 S 0.063 5.937 9 C -0.120 4.120 10 C 0.211 3.789 11 H 0.069 0.931 12 O -0.577 6.577 13 C -0.563 4.563 14 H 0.079 0.921 15 C 0.088 3.912 16 N -0.884 5.884 17 Si 0.869 3.131 18 H -0.284 1.284 19 H -0.293 1.293 20 H -0.216 1.216 21 O -0.205 6.205 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.362 0.638 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.397 -2.209 4.623 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.001 5.999 3 C -0.140 4.140 4 C -0.064 4.064 5 N -0.100 5.100 6 N -0.144 5.144 7 C -0.166 4.166 8 S 0.295 5.705 9 C -0.269 4.269 10 C 0.151 3.849 11 H 0.087 0.913 12 O -0.383 6.383 13 C -0.602 4.602 14 H 0.097 0.903 15 C -0.118 4.118 16 N -0.520 5.520 17 Si 0.695 3.305 18 H -0.211 1.211 19 H -0.219 1.219 20 H -0.138 1.138 21 O -0.086 6.086 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.133 0.867 26 H 0.146 0.854 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.209 0.791 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.925 -3.420 5.013 22.750 hybrid contribution -1.111 1.242 0.021 1.667 sum -23.036 -2.178 5.034 23.680 Atomic orbital electron populations 1.23479 0.93393 1.07167 1.05392 1.87520 1.07619 1.06727 1.98083 1.21527 0.85701 0.98366 1.08413 1.26532 0.95674 1.04001 0.80217 1.74113 0.96512 1.14041 1.25284 1.75040 1.11492 1.20218 1.07630 1.30625 0.89883 1.01007 0.95052 1.86384 0.87617 1.87729 1.08783 1.24940 0.96002 1.07540 0.98413 1.19635 0.87350 0.86420 0.91486 0.91340 1.86717 1.93399 1.17398 1.40806 1.21265 0.90818 1.54516 0.93617 0.90317 1.24955 0.96109 0.92330 0.98369 1.69928 1.01950 1.46890 1.33227 0.87048 0.79140 0.78299 0.86062 1.21093 1.21918 1.13822 1.84966 1.16553 1.70019 1.37057 0.90038 0.89905 0.87413 0.86718 0.85447 0.88379 0.87889 0.79061 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 10.76 101.05 1.09 0.48 16 2 S -0.22 -2.14 22.36 -107.50 -2.40 -4.54 16 3 C 0.01 0.08 6.57 36.01 0.24 0.31 16 4 C 0.15 2.13 7.74 -13.02 -0.10 2.03 16 5 N -0.25 -4.26 12.20 32.59 0.40 -3.86 16 6 N -0.29 -5.41 11.63 30.29 0.35 -5.05 16 7 C 0.15 2.58 8.53 52.47 0.45 3.03 16 8 S 0.06 1.04 21.95 -107.50 -2.36 -1.32 16 9 C -0.12 -2.25 4.86 37.16 0.18 -2.07 16 10 C 0.21 4.58 2.36 -27.88 -0.07 4.51 16 11 H 0.07 1.51 7.58 -51.93 -0.39 1.12 16 12 O -0.58 -11.97 9.72 -35.23 -0.34 -12.31 16 13 C -0.56 -14.81 9.34 -34.44 -0.32 -15.13 16 14 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 16 N -0.88 -26.05 13.96 55.43 0.77 -25.27 16 17 Si 0.87 20.71 26.99 -169.99 -4.59 16.12 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.22 -4.97 5.30 56.52 0.30 -4.67 16 21 O -0.20 -3.19 10.90 3.55 0.04 -3.15 16 22 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 23 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 28 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16 29 H 0.36 6.59 9.04 45.56 0.41 7.00 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -31.76 294.76 -4.92 -36.68 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -2.60 Total: 2.78 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 1.37 Total: -4.50 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 1.52 Total: -34.19 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.30 Total: -15.46 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.59 Total: 16.12 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -4.76 Total: -5.86 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.76 -4.92 -36.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322875855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.517 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds