Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81398 * 103.00122 * 2 1 4 4 C 1.50704 * 109.47083 * 180.02562 * 3 2 1 5 5 N 1.30077 * 126.20744 * 89.97341 * 4 3 2 6 6 N 1.28652 * 109.56021 * 180.02562 * 5 4 3 7 7 C 1.31142 * 109.31051 * 359.97438 * 6 5 4 8 8 S 1.76208 * 126.37959 * 180.02562 * 7 6 5 9 9 C 1.80998 * 99.99889 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47161 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47066 * 60.00373 * 10 9 8 12 12 O 1.42903 * 109.47446 * 300.00249 * 10 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 O 1.34631 * 107.24078 * 0.26551 * 7 6 5 22 22 H 1.09003 * 109.47600 * 300.00448 * 1 2 3 23 23 H 1.08997 * 109.47311 * 60.00120 * 1 2 3 24 24 H 1.08994 * 109.47448 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47271 * 60.00012 * 3 2 1 26 26 H 1.08997 * 109.46797 * 299.99580 * 3 2 1 27 27 H 1.09004 * 109.46826 * 60.00137 * 9 8 7 28 28 H 1.09000 * 109.47766 * 300.00468 * 9 8 7 29 29 H 0.96697 * 113.99557 * 300.00558 * 12 10 9 30 30 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4826 2.0235 -1.0505 6 7 5.7075 2.1620 -0.6825 7 6 5.7685 2.1695 0.6275 8 16 7.2253 2.3351 1.6050 9 6 8.4676 2.4761 0.2962 10 6 9.8539 2.6343 0.9239 11 1 10.0744 1.7638 1.5418 12 8 9.8788 3.8117 1.7332 13 6 10.8882 2.7523 -0.1658 14 1 10.5868 2.7184 -1.2024 15 6 12.2185 2.9100 0.1605 16 7 13.1205 3.0185 -0.7904 17 14 12.7396 2.9693 1.9534 18 1 13.0429 1.5948 2.4264 19 1 13.9508 3.8180 2.0889 20 1 11.6397 3.5425 2.7699 21 8 4.5115 2.0218 1.0864 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8031 2.2371 0.8900 26 1 1.8032 2.2370 -0.8900 27 1 8.2473 3.3468 -0.3215 28 1 8.4483 1.5782 -0.3215 29 1 9.6906 4.6266 1.2479 30 1 14.0564 3.1290 -0.5608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322875855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -31.387648 kcal Electronic energy + Delta-G solvation = -16225.862311 eV Core-core repulsion = 13275.299099 eV Total energy + Delta-G solvation = -2950.563211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.34124 -38.26881 -37.43232 -34.46885 -34.21922 -31.94718 -30.21440 -29.39067 -27.68226 -25.34208 -23.95116 -22.79542 -19.89991 -19.44900 -18.85199 -17.91127 -17.32342 -16.93927 -16.42755 -16.34965 -16.10274 -15.48964 -15.01077 -14.89152 -14.84869 -13.87110 -13.80449 -13.67480 -13.64118 -13.47584 -13.22277 -13.00033 -12.72960 -12.42439 -12.12498 -11.69986 -11.68897 -11.14671 -11.05897 -10.84879 -10.35795 -9.00377 -8.87525 -8.36736 -6.54956 -0.60770 -0.48067 0.45162 0.84586 1.21038 1.40820 1.43756 1.49586 1.59265 1.77226 2.43349 2.89492 3.00175 3.59240 3.69570 3.85985 3.95257 3.96672 4.05835 4.14285 4.36588 4.38179 4.41852 4.80427 4.92468 5.23397 5.33868 6.04490 6.58059 6.91508 7.08607 7.26315 8.76853 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.054594 B = 0.003330 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.751960 B = 8406.607524 C = 8619.086315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.294 6.294 3 C 0.016 3.984 4 C 0.174 3.826 5 N -0.287 5.287 6 N -0.319 5.319 7 C 0.138 3.862 8 S 0.107 5.893 9 C -0.119 4.119 10 C 0.221 3.779 11 H 0.072 0.928 12 O -0.575 6.575 13 C -0.564 4.564 14 H 0.040 0.960 15 C 0.033 3.967 16 N -0.935 5.935 17 Si 0.936 3.064 18 H -0.283 1.283 19 H -0.297 1.297 20 H -0.197 1.197 21 O -0.205 6.205 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.376 0.624 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.102 -2.022 6.660 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.071 6.071 3 C -0.132 4.132 4 C -0.042 4.042 5 N -0.135 5.135 6 N -0.171 5.171 7 C -0.180 4.180 8 S 0.338 5.662 9 C -0.268 4.268 10 C 0.161 3.839 11 H 0.090 0.910 12 O -0.382 6.382 13 C -0.603 4.603 14 H 0.059 0.941 15 C -0.168 4.168 16 N -0.573 5.573 17 Si 0.759 3.241 18 H -0.209 1.209 19 H -0.224 1.224 20 H -0.119 1.119 21 O -0.087 6.087 22 H 0.118 0.882 23 H 0.117 0.883 24 H 0.134 0.866 25 H 0.165 0.835 26 H 0.169 0.831 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.224 0.776 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.662 -3.228 7.029 25.847 hybrid contribution -0.513 1.149 -0.686 1.433 sum -25.175 -2.079 6.343 26.045 Atomic orbital electron populations 1.23562 0.88336 1.08256 1.07104 1.87787 1.13158 1.07806 1.98347 1.21855 0.82153 0.98020 1.11169 1.27562 0.97274 1.00287 0.79067 1.74056 0.96390 1.16460 1.26548 1.74969 1.12747 1.20941 1.08487 1.30605 0.90666 1.01856 0.94875 1.86055 0.86229 1.87966 1.05949 1.24549 0.96083 1.07037 0.99152 1.19312 0.87684 0.86871 0.90074 0.90989 1.86635 1.93473 1.17702 1.40439 1.21557 0.92156 1.53211 0.93423 0.94131 1.25847 0.96286 0.92130 1.02534 1.70063 1.02434 1.49271 1.35553 0.86028 0.78832 0.78200 0.81015 1.20889 1.22411 1.11876 1.84974 1.16108 1.70062 1.37527 0.88156 0.88346 0.86562 0.83461 0.83121 0.88731 0.88841 0.77557 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.76 113.37 1.22 0.56 16 2 S -0.29 -5.07 22.36 -56.49 -1.26 -6.33 16 3 C 0.02 0.24 6.57 71.24 0.47 0.71 16 4 C 0.17 4.61 7.74 88.37 0.68 5.30 16 5 N -0.29 -9.62 12.20 -165.24 -2.02 -11.63 16 6 N -0.32 -11.83 11.63 -172.08 -2.00 -13.83 16 7 C 0.14 4.58 8.53 130.35 1.11 5.69 16 8 S 0.11 3.36 21.95 -56.49 -1.24 2.12 16 9 C -0.12 -4.44 4.86 71.98 0.35 -4.09 16 10 C 0.22 9.39 2.36 29.85 0.07 9.47 16 11 H 0.07 3.05 7.58 -2.38 -0.02 3.04 16 12 O -0.57 -22.59 9.72 -148.98 -1.45 -24.04 16 13 C -0.56 -30.22 9.34 25.60 0.24 -29.98 16 14 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 15 C 0.03 1.83 5.47 84.66 0.46 2.30 16 16 N -0.93 -56.60 13.96 21.45 0.30 -56.30 16 17 Si 0.94 42.63 26.99 68.60 1.85 44.48 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.20 -8.33 5.30 99.48 0.53 -7.80 16 21 O -0.21 -6.06 10.90 -10.23 -0.11 -6.18 16 22 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 23 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 28 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.38 12.92 9.04 -74.06 -0.67 12.25 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -70.19 294.76 -1.00 -71.19 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.32 Total: 10.56 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.61 Total: -10.04 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -3.72 Total: -81.77 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -1.56 Total: -30.22 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.85 Total: 44.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.50 Total: -4.21 kcal Total: -70.19 -1.00 -71.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322875855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.805 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds