Wall clock time and date at job start Mon Mar 30 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46659 * 2 1 4 4 C 1.50695 * 109.47145 * 119.99926 * 2 1 3 5 5 H 1.07996 * 119.99833 * 119.99929 * 4 2 1 6 6 C 1.37876 * 120.00084 * 300.00131 * 4 2 1 7 7 N 1.31517 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46759 * 90.00058 * 8 6 4 10 10 H 1.48498 * 109.47299 * 209.99871 * 8 6 4 11 11 H 1.48502 * 109.47090 * 329.99993 * 8 6 4 12 12 O 1.45196 * 109.47070 * 240.00318 * 2 1 3 13 13 C 1.34801 * 117.00447 * 89.99941 * 12 2 1 14 14 O 1.21556 * 119.99800 * 359.97438 * 13 12 2 15 15 C 1.47025 * 119.99981 * 179.97438 * 13 12 2 16 16 C 1.44468 * 123.47743 * 354.54531 * 15 13 12 17 17 C 1.32737 * 113.09082 * 180.02562 * 16 15 13 18 18 S 1.75501 * 110.59830 * 359.97438 * 17 16 15 19 19 C 1.36104 * 123.47306 * 174.56745 * 15 13 12 20 20 C 1.50691 * 124.59891 * 359.71419 * 19 15 13 21 21 F 1.39903 * 109.47404 * 193.68549 * 20 19 15 22 22 F 1.39900 * 109.47234 * 313.68969 * 20 19 15 23 23 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47300 * 300.00321 * 1 2 3 25 25 H 1.09007 * 109.47177 * 59.99636 * 1 2 3 26 26 H 0.97006 * 119.99867 * 179.97438 * 7 6 4 27 27 H 1.07997 * 123.45640 * 0.02562 * 16 15 13 28 28 H 1.07997 * 124.70231 * 179.97438 * 17 16 15 29 29 H 1.09000 * 109.47462 * 73.68829 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7119 12 8 2.0140 -0.6844 -1.1856 13 6 2.2180 0.0673 -2.2858 14 8 1.9969 1.2621 -2.2551 15 6 2.7079 -0.5582 -3.5229 16 6 3.1026 -1.9450 -3.6125 17 6 3.5126 -2.2922 -4.8264 18 16 3.4310 -0.9227 -5.9208 19 6 2.8368 0.1098 -4.7017 20 6 2.4942 1.5633 -4.9035 21 9 2.4448 1.8451 -6.2729 22 9 1.2486 1.8333 -4.3265 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1614 3.4844 27 1 3.0677 -2.6291 -2.7776 28 1 3.8496 -3.2804 -5.1022 29 1 3.2554 2.1849 -4.4319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342505182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:12 Heat of formation + Delta-G solvation = -156.089664 kcal Electronic energy + Delta-G solvation = -19163.208503 eV Core-core repulsion = 15621.104669 eV Total energy + Delta-G solvation = -3542.103834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.91596 -46.87410 -39.68022 -37.30616 -35.61454 -33.26432 -31.11796 -29.68942 -26.87539 -25.32499 -23.97262 -21.95903 -20.74504 -19.20855 -18.48509 -17.38312 -17.10751 -16.62729 -16.08559 -15.85891 -15.12850 -14.95791 -14.64837 -13.93706 -13.79316 -13.34543 -13.11028 -12.90259 -12.64508 -12.55048 -12.08350 -11.86616 -11.41668 -11.25425 -11.14087 -11.03222 -10.85389 -10.38290 -10.29972 -9.78341 -9.56976 -9.22098 -8.92833 -8.60298 -8.50249 -6.20090 -4.27298 0.42977 1.19462 1.65465 1.94188 3.23287 3.28618 3.32251 3.48484 3.52797 3.68591 4.18796 4.32102 4.77151 4.86034 4.92934 5.13023 5.29135 5.42876 5.86800 5.94412 6.12803 6.63207 6.89167 6.90970 7.11403 7.56599 7.70588 7.89425 8.11194 8.55989 8.83884 9.38005 10.87331 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.004935 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.370898 B = 5672.516485 C = 6364.649967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.048 0.952 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.346 6.346 13 C 0.507 3.493 14 O -0.502 6.502 15 C -0.090 4.090 16 C -0.088 4.088 17 C -0.231 4.231 18 S 0.228 5.772 19 C -0.258 4.258 20 C 0.349 3.651 21 F -0.203 7.203 22 F -0.170 7.170 23 H 0.037 0.963 24 H 0.100 0.900 25 H 0.017 0.983 26 H 0.266 0.734 27 H 0.166 0.834 28 H 0.176 0.824 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -3.945 -15.967 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.262 6.262 13 C 0.349 3.651 14 O -0.393 6.393 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.366 4.366 18 S 0.495 5.505 19 C -0.378 4.378 20 C 0.293 3.707 21 F -0.184 7.184 22 F -0.151 7.151 23 H 0.056 0.944 24 H 0.118 0.882 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.183 0.817 28 H 0.193 0.807 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.579 -3.292 -17.311 18.484 hybrid contribution -0.281 -0.502 2.417 2.485 sum 5.298 -3.794 -14.894 16.257 Atomic orbital electron populations 1.22166 0.97426 1.00167 1.01542 1.20692 0.91494 0.93976 0.77396 0.93398 1.21007 1.32590 1.13546 0.88814 0.91285 1.24888 0.94903 0.95113 0.99059 1.69904 1.35931 1.22531 1.24217 0.86266 0.78544 0.79872 0.81402 1.20397 1.20931 1.19597 1.86561 1.75745 1.43006 1.20917 1.20210 0.75479 0.85237 0.84210 1.90841 1.48131 1.15806 1.84533 1.19672 1.04752 0.94250 0.92081 1.21418 0.98045 0.93879 0.98318 1.25658 1.10028 1.03544 0.97369 1.82973 1.59892 0.97854 1.09800 1.25287 1.10939 1.01342 1.00198 1.19556 0.85824 0.90137 0.75147 1.92992 1.97079 1.94476 1.33869 1.93118 1.43867 1.94317 1.83786 0.94425 0.88185 0.96342 0.92357 0.81698 0.80683 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.33 37.16 0.35 -3.64 15 2 C 0.22 5.82 2.56 -27.88 -0.07 5.75 15 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 15 4 C -0.52 -14.53 8.90 -34.44 -0.31 -14.84 15 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -25.17 11.32 55.43 0.63 -24.55 15 8 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 15 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 12 O -0.35 -8.25 9.60 -40.77 -0.39 -8.64 15 13 C 0.51 10.90 7.75 34.29 0.27 11.17 15 14 O -0.50 -11.77 12.62 -19.31 -0.24 -12.01 15 15 C -0.09 -1.51 5.95 -104.65 -0.62 -2.13 15 16 C -0.09 -1.19 10.14 -39.01 -0.40 -1.59 15 17 C -0.23 -2.37 11.12 28.85 0.32 -2.05 15 18 S 0.23 2.40 22.40 -107.50 -2.41 -0.01 15 19 C -0.26 -3.74 6.08 -35.08 -0.21 -3.96 15 20 C 0.35 5.11 4.87 36.00 0.18 5.29 15 21 F -0.20 -2.72 16.80 2.25 0.04 -2.68 15 22 F -0.17 -3.14 14.56 2.25 0.03 -3.10 15 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.10 2.73 6.07 -51.93 -0.32 2.41 15 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 27 H 0.17 2.14 8.06 -52.49 -0.42 1.72 15 28 H 0.18 1.20 8.06 -52.49 -0.42 0.78 15 29 H 0.13 1.67 8.14 -51.93 -0.42 1.25 15 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -30.84 280.07 -6.09 -36.92 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -2.35 Total: -1.67 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.60 Total: -4.38 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.63 Total: -24.55 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.64 Total: -20.66 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.07 Total: -5.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.41 Total: -0.01 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.84 -6.09 -36.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342505182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.167 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds