Wall clock time and date at job start Mon Mar 30 2020 01:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48507 * 109.46958 * 240.00010 * 3 2 1 5 5 H 1.48497 * 109.47420 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47295 * 120.00258 * 3 2 1 7 7 C 1.38641 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00542 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.35764 * 117.00362 * 185.05766 * 9 7 2 11 11 C 1.38903 * 120.05273 * 174.73566 * 10 9 7 12 12 C 1.38077 * 119.96135 * 180.27506 * 11 10 9 13 13 C 1.38403 * 120.06593 * 359.45600 * 12 11 10 14 14 Cl 1.73601 * 119.94807 * 180.25258 * 13 12 11 15 15 C 1.38479 * 120.10390 * 0.27410 * 13 12 11 16 16 Br 1.89098 * 119.98245 * 180.02562 * 15 13 12 17 17 C 1.38190 * 120.03549 * 0.02562 * 15 13 12 18 18 H 0.96998 * 119.99883 * 359.97438 * 1 2 3 19 19 H 1.08004 * 120.01393 * 0.02733 * 11 10 9 20 20 H 1.08000 * 119.96285 * 179.72717 * 12 11 10 21 21 H 1.08007 * 120.03625 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5046 0.1056 11 6 1.4364 -4.7351 0.2221 12 6 2.1861 -5.8890 0.3356 13 6 3.5685 -5.8219 0.3221 14 17 4.5081 -7.2752 0.4584 15 6 4.2032 -4.5971 0.2003 16 35 6.0921 -4.5095 0.1815 17 6 3.4570 -3.4390 0.0927 18 1 -0.4850 0.8400 0.0004 19 1 0.3577 -4.7888 0.2280 20 1 1.6933 -6.8453 0.4307 21 1 3.9521 -2.4837 -0.0018 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459081401.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:57 Heat of formation + Delta-G solvation = -12.988462 kcal Electronic energy + Delta-G solvation = -11498.319843 eV Core-core repulsion = 9026.080441 eV Total energy + Delta-G solvation = -2472.239402 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 275.929 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.30828 -37.01066 -35.64532 -32.55357 -31.79659 -29.30508 -28.51813 -25.55748 -22.18586 -21.51678 -18.30552 -17.36264 -15.75161 -15.09287 -14.60710 -14.07052 -13.89214 -13.10066 -12.96553 -12.76943 -12.00166 -11.59628 -11.21070 -11.16376 -10.91194 -10.63272 -10.57398 -10.19686 -9.85268 -9.56318 -8.98094 -8.38277 -7.47884 -6.65613 -4.24846 1.61699 1.84255 1.93329 2.69763 3.04510 3.05323 3.08459 3.81364 4.11738 4.86103 4.97910 5.28047 5.71644 5.80502 6.13422 6.22434 6.50271 6.68195 6.81236 7.09624 7.28353 7.76616 8.78443 9.39977 10.50635 Molecular weight = 275.93amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.006725 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.982469 B = 4162.450050 C = 5136.873700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.398 4.398 8 H 0.095 0.905 9 O -0.160 6.160 10 C 0.158 3.842 11 C -0.169 4.169 12 C -0.059 4.059 13 C -0.109 4.109 14 Cl -0.084 7.084 15 C -0.026 4.026 16 Br -0.059 7.059 17 C -0.201 4.201 18 H 0.275 0.725 19 H 0.133 0.867 20 H 0.132 0.868 21 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -7.857 0.510 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.473 4.473 8 H 0.113 0.887 9 O -0.061 6.061 10 C 0.101 3.899 11 C -0.189 4.189 12 C -0.078 4.078 13 C -0.138 4.138 14 Cl -0.056 7.056 15 C -0.106 4.106 16 Br 0.027 6.973 17 C -0.222 4.222 18 H 0.085 0.915 19 H 0.151 0.849 20 H 0.150 0.850 21 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.732 -7.700 0.489 11.652 hybrid contribution 0.161 0.668 0.011 0.687 sum 8.893 -7.032 0.500 11.349 Atomic orbital electron populations 1.70020 1.06072 1.28383 1.44072 1.25350 0.95906 0.99061 0.95868 0.85737 0.78805 0.79228 0.79542 1.19182 1.20039 1.19182 1.21361 0.91969 0.80511 1.53464 0.88723 1.84002 1.34120 1.11462 1.76559 1.19286 0.89485 0.88490 0.92630 1.20284 1.00235 0.89532 1.08818 1.20508 0.90553 0.98289 0.98477 1.20126 0.91662 0.85609 1.16439 1.98298 1.73223 1.37010 1.97042 1.21322 0.89373 0.94250 1.05693 1.96591 1.04024 1.99073 1.97656 1.21054 0.93687 0.97503 1.09943 0.91533 0.84926 0.85040 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.63 13.67 55.48 0.76 -22.87 14 2 C 0.04 1.16 5.49 -17.52 -0.10 1.06 14 3 Si 0.94 19.47 29.55 -169.99 -5.02 14.45 14 4 H -0.27 -5.36 7.11 56.52 0.40 -4.95 14 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 14 6 H -0.27 -5.37 7.11 56.52 0.40 -4.96 14 7 C -0.40 -10.45 9.49 30.88 0.29 -10.16 14 8 H 0.10 2.30 5.20 -52.49 -0.27 2.03 14 9 O -0.16 -4.24 9.76 0.00 0.00 -4.24 14 10 C 0.16 3.54 6.65 -39.11 -0.26 3.28 14 11 C -0.17 -3.25 9.99 -39.39 -0.39 -3.64 14 12 C -0.06 -0.99 9.82 -39.58 -0.39 -1.38 14 13 C -0.11 -1.93 6.32 -39.43 -0.25 -2.18 14 14 Cl -0.08 -1.31 27.73 -51.86 -1.44 -2.74 14 15 C -0.03 -0.49 6.22 -39.51 -0.25 -0.74 14 16 Br -0.06 -0.96 32.52 -68.01 -2.21 -3.17 14 17 C -0.20 -4.18 8.91 -39.38 -0.35 -4.53 14 18 H 0.27 6.98 8.31 -40.82 -0.34 6.65 14 19 H 0.13 2.36 8.06 -52.48 -0.42 1.94 14 20 H 0.13 1.82 8.06 -52.49 -0.42 1.40 14 21 H 0.15 3.03 5.64 -52.48 -0.30 2.74 14 LS Contribution 232.71 15.07 3.51 3.51 Total: -1.00 -27.04 232.71 -6.65 -33.68 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -0.55 Total: -0.33 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.69 Total: -18.29 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.76 Total: -22.87 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.00 Total: -4.24 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.44 Total: -2.74 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -2.21 Total: -3.17 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -27.04 -6.65 -33.68 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459081401.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.695 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds