Wall clock time and date at job start Mon Mar 30 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38287 * 119.92498 * 59.72499 * 4 2 1 6 6 C 1.38103 * 120.07544 * 179.72708 * 5 4 2 7 7 C 1.38910 * 119.92428 * 0.54143 * 6 5 4 8 8 N 1.39676 * 120.07857 * 179.70545 * 7 6 5 9 9 C 1.46492 * 120.00227 * 180.02562 * 8 7 6 10 10 C 1.46507 * 119.99552 * 0.02698 * 8 7 6 11 11 C 1.53002 * 109.47197 * 89.99932 * 10 8 7 12 12 H 1.08997 * 109.47205 * 54.99662 * 11 10 8 13 13 C 1.53004 * 109.46994 * 294.99920 * 11 10 8 14 14 C 1.52992 * 109.46807 * 174.99667 * 11 10 8 15 15 C 1.50711 * 109.46938 * 184.99607 * 14 11 10 16 16 H 1.07999 * 119.99727 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00050 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00090 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00114 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47376 * 89.99803 * 19 17 15 21 21 H 1.48499 * 109.47370 * 210.00117 * 19 17 15 22 22 H 1.48505 * 109.46936 * 330.00036 * 19 17 15 23 23 C 1.38909 * 119.84779 * 359.73239 * 7 6 5 24 24 C 1.38099 * 119.93044 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.08004 * 119.96348 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.03631 * 180.27369 * 6 5 4 34 34 H 1.08996 * 109.47088 * 90.00106 * 9 8 7 35 35 H 1.09005 * 109.46697 * 210.00271 * 9 8 7 36 36 H 1.09001 * 109.47436 * 329.99904 * 9 8 7 37 37 H 1.09000 * 109.47060 * 209.99977 * 10 8 7 38 38 H 1.09004 * 109.46719 * 329.99651 * 10 8 7 39 39 H 1.08997 * 109.46934 * 299.99908 * 13 11 10 40 40 H 1.08997 * 109.47266 * 59.99570 * 13 11 10 41 41 H 1.08998 * 109.46664 * 179.97438 * 13 11 10 42 42 H 1.08994 * 109.47935 * 304.99853 * 14 11 10 43 43 H 1.08999 * 109.47128 * 65.00362 * 14 11 10 44 44 H 0.97001 * 120.00121 * 179.97438 * 18 17 15 45 45 H 1.08006 * 120.03388 * 179.97438 * 23 7 6 46 46 H 1.07999 * 119.97120 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2399 -2.4857 6 6 2.1558 -0.8852 -3.6154 7 6 2.9546 -2.0146 -3.4898 8 7 3.4199 -2.6734 -4.6302 9 6 4.2617 -3.8647 -4.4959 10 6 3.0659 -2.1728 -5.9609 11 6 4.1207 -1.1661 -6.4243 12 1 5.1071 -1.6279 -6.3819 13 6 4.0920 0.0602 -5.5097 14 6 3.8196 -0.7374 -7.8618 15 6 4.9243 0.1581 -8.3607 16 1 5.7579 0.3972 -7.7170 17 6 4.8707 0.6722 -9.6389 18 7 3.8554 0.3815 -10.4226 19 14 6.2403 1.7817 -10.2576 20 1 7.2938 0.9560 -10.9008 21 1 5.6904 2.7418 -11.2480 22 1 6.8257 2.5292 -9.1157 23 6 3.2893 -2.4879 -2.2274 24 6 2.8277 -1.8343 -1.1019 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.0676 0.6356 -2.5827 33 1 1.8937 -0.5146 -4.5954 34 1 3.6312 -4.7532 -4.4624 35 1 4.9371 -3.9303 -5.3489 36 1 4.8432 -3.7969 -3.5764 37 1 3.0248 -3.0053 -6.6632 38 1 2.0920 -1.6850 -5.9182 39 1 3.1056 0.5220 -5.5521 40 1 4.3064 -0.2453 -4.4856 41 1 4.8438 0.7771 -5.8396 42 1 3.7523 -1.6200 -8.4977 43 1 2.8735 -0.1969 -7.8891 44 1 3.8175 0.7435 -11.3217 45 1 3.9099 -3.3660 -2.1263 46 1 3.0871 -2.2019 -0.1200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462077496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:33 Heat of formation + Delta-G solvation = 4.369089 kcal Electronic energy + Delta-G solvation = -21488.460264 eV Core-core repulsion = 18570.009048 eV Total energy + Delta-G solvation = -2918.451216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76808 -37.44544 -35.06829 -33.77082 -32.10783 -30.72821 -28.89131 -27.53603 -27.16076 -26.56443 -24.89142 -23.12504 -22.30054 -21.26411 -19.67223 -18.91701 -17.30809 -16.31157 -15.64902 -15.13524 -14.78580 -14.50905 -14.27322 -14.21517 -13.66862 -13.43956 -13.32403 -13.04082 -12.70457 -12.60513 -12.35474 -12.28395 -11.96427 -11.82794 -11.59191 -11.29128 -11.19430 -11.05486 -10.86396 -10.75206 -10.66056 -10.52175 -10.41138 -10.29507 -9.67423 -9.45402 -9.19648 -8.95144 -8.62302 -8.35171 -6.85362 -5.99698 -4.01117 1.71364 1.85394 3.31500 3.38046 3.41130 3.47308 4.11242 4.46432 4.78127 4.86729 5.14256 5.16640 5.21539 5.34253 5.36262 5.45978 5.54340 5.57265 5.57662 5.65251 5.70054 5.80120 5.83304 5.87967 5.94612 5.96000 6.01486 6.07455 6.19943 6.21880 6.27466 6.28273 6.45750 6.58975 6.61542 6.70396 6.94009 6.98987 7.11201 7.14079 7.17114 7.61890 7.65457 7.77123 7.86911 7.99485 8.43770 9.04778 9.62545 11.11506 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.003864 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.485935 B = 7245.520597 C = 7971.399671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C -0.144 4.144 4 C -0.148 4.148 5 C -0.068 4.068 6 C -0.189 4.189 7 C 0.225 3.775 8 N -0.627 5.627 9 C 0.095 3.905 10 C 0.124 3.876 11 C -0.102 4.102 12 H 0.056 0.944 13 C -0.130 4.130 14 C 0.029 3.971 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.207 4.207 24 C -0.073 4.073 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.055 0.945 42 H 0.014 0.986 43 H 0.017 0.983 44 H 0.260 0.740 45 H 0.116 0.884 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 -4.693 19.199 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.201 4.201 4 C -0.150 4.150 5 C -0.087 4.087 6 C -0.211 4.211 7 C 0.122 3.878 8 N -0.336 5.336 9 C -0.049 4.049 10 C 0.002 3.998 11 C -0.121 4.121 12 H 0.074 0.926 13 C -0.187 4.187 14 C -0.009 4.009 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.230 4.230 24 C -0.092 4.092 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.439 -4.772 18.840 19.935 hybrid contribution 0.858 0.587 -0.608 1.204 sum -3.582 -4.185 18.232 19.046 Atomic orbital electron populations 1.21859 0.95053 1.01666 1.01456 1.19938 0.95338 0.95648 0.95508 1.21862 1.01200 0.95589 1.01465 1.19465 1.03101 0.98217 0.94213 1.20656 0.98048 0.98504 0.91473 1.20941 1.03090 0.97521 0.99514 1.17841 0.92125 0.91297 0.86573 1.46658 1.54111 1.28995 1.03819 1.21567 0.94154 0.86879 1.02289 1.21759 0.98930 0.97650 0.81493 1.21636 0.97439 0.94663 0.98391 0.92590 1.21851 1.01234 0.98128 0.97483 1.19096 0.97101 0.96196 0.88472 1.21212 1.06728 1.29000 0.98170 0.92672 1.25006 0.95790 0.96655 0.97010 1.69959 1.30178 1.45278 1.08195 0.86639 0.82300 0.80661 0.78688 1.20749 1.21253 1.19908 1.20582 1.07521 1.03781 0.91096 1.20651 0.96547 0.94664 0.97348 0.93015 0.92540 0.92778 0.91291 0.92493 0.93020 0.92667 0.86741 0.85298 0.93909 0.91403 0.91886 0.91287 0.91164 0.93702 0.94334 0.92557 0.96758 0.96511 0.93066 0.86579 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.00 37.16 0.33 -0.97 16 2 C -0.05 -0.46 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.39 9.01 37.16 0.33 -1.05 16 4 C -0.15 -1.84 4.79 -104.59 -0.50 -2.34 16 5 C -0.07 -0.92 8.70 -39.61 -0.34 -1.26 16 6 C -0.19 -2.86 7.15 -39.38 -0.28 -3.14 16 7 C 0.22 3.39 5.38 -83.79 -0.45 2.94 16 8 N -0.63 -9.51 2.87 -179.62 -0.52 -10.03 16 9 C 0.09 1.17 10.19 59.84 0.61 1.78 16 10 C 0.12 2.11 4.95 -4.04 -0.02 2.09 16 11 C -0.10 -2.05 2.54 -90.62 -0.23 -2.28 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.13 -2.54 7.45 37.16 0.28 -2.26 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 15 C -0.51 -14.27 8.41 -34.44 -0.29 -14.55 16 16 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.21 -2.80 9.21 -39.38 -0.36 -3.16 16 24 C -0.07 -0.91 9.66 -39.61 -0.38 -1.30 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.53 7.37 -51.93 -0.38 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 29 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 1.39 7.09 -52.48 -0.37 1.02 16 33 H 0.13 2.06 4.40 -52.48 -0.23 1.83 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.06 0.70 6.20 -51.93 -0.32 0.38 16 37 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 38 H 0.07 1.19 6.20 -51.93 -0.32 0.87 16 39 H 0.04 0.85 6.66 -51.93 -0.35 0.51 16 40 H 0.04 0.70 5.86 -51.93 -0.30 0.40 16 41 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.12 1.39 6.14 -52.48 -0.32 1.06 16 46 H 0.11 1.15 7.94 -52.49 -0.42 0.73 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -29.63 353.15 -9.19 -38.82 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.90 Total: -0.63 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -1.81 Total: -24.15 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.22 Total: -36.02 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.63 -9.19 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462077496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.189 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds