Wall clock time and date at job start Mon Mar 30 2020 01:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38287 * 119.92498 * 59.72499 * 4 2 1 6 6 C 1.38103 * 120.07544 * 179.72708 * 5 4 2 7 7 C 1.38910 * 119.92428 * 0.54143 * 6 5 4 8 8 N 1.39676 * 120.07857 * 179.70545 * 7 6 5 9 9 C 1.46492 * 120.00227 * 180.02562 * 8 7 6 10 10 C 1.46507 * 119.99552 * 0.02698 * 8 7 6 11 11 C 1.53002 * 109.47197 * 89.99932 * 10 8 7 12 12 H 1.08997 * 109.47205 * 54.99662 * 11 10 8 13 13 C 1.53004 * 109.46994 * 294.99920 * 11 10 8 14 14 C 1.52992 * 109.46807 * 174.99667 * 11 10 8 15 15 C 1.50711 * 109.46938 * 184.99607 * 14 11 10 16 16 H 1.07999 * 119.99727 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00050 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00090 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00114 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47376 * 89.99803 * 19 17 15 21 21 H 1.48499 * 109.47370 * 210.00117 * 19 17 15 22 22 H 1.48505 * 109.46936 * 330.00036 * 19 17 15 23 23 C 1.38909 * 119.84779 * 359.73239 * 7 6 5 24 24 C 1.38099 * 119.93044 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.08004 * 119.96348 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.03631 * 180.27369 * 6 5 4 34 34 H 1.08996 * 109.47088 * 90.00106 * 9 8 7 35 35 H 1.09005 * 109.46697 * 210.00271 * 9 8 7 36 36 H 1.09001 * 109.47436 * 329.99904 * 9 8 7 37 37 H 1.09000 * 109.47060 * 209.99977 * 10 8 7 38 38 H 1.09004 * 109.46719 * 329.99651 * 10 8 7 39 39 H 1.08997 * 109.46934 * 299.99908 * 13 11 10 40 40 H 1.08997 * 109.47266 * 59.99570 * 13 11 10 41 41 H 1.08998 * 109.46664 * 179.97438 * 13 11 10 42 42 H 1.08994 * 109.47935 * 304.99853 * 14 11 10 43 43 H 1.08999 * 109.47128 * 65.00362 * 14 11 10 44 44 H 0.97001 * 120.00121 * 179.97438 * 18 17 15 45 45 H 1.08006 * 120.03388 * 179.97438 * 23 7 6 46 46 H 1.07999 * 119.97120 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2399 -2.4857 6 6 2.1558 -0.8852 -3.6154 7 6 2.9546 -2.0146 -3.4898 8 7 3.4199 -2.6734 -4.6302 9 6 4.2617 -3.8647 -4.4959 10 6 3.0659 -2.1728 -5.9609 11 6 4.1207 -1.1661 -6.4243 12 1 5.1071 -1.6279 -6.3819 13 6 4.0920 0.0602 -5.5097 14 6 3.8196 -0.7374 -7.8618 15 6 4.9243 0.1581 -8.3607 16 1 5.7579 0.3972 -7.7170 17 6 4.8707 0.6722 -9.6389 18 7 3.8554 0.3815 -10.4226 19 14 6.2403 1.7817 -10.2576 20 1 7.2938 0.9560 -10.9008 21 1 5.6904 2.7418 -11.2480 22 1 6.8257 2.5292 -9.1157 23 6 3.2893 -2.4879 -2.2274 24 6 2.8277 -1.8343 -1.1019 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.0676 0.6356 -2.5827 33 1 1.8937 -0.5146 -4.5954 34 1 3.6312 -4.7532 -4.4624 35 1 4.9371 -3.9303 -5.3489 36 1 4.8432 -3.7969 -3.5764 37 1 3.0248 -3.0053 -6.6632 38 1 2.0920 -1.6850 -5.9182 39 1 3.1056 0.5220 -5.5521 40 1 4.3064 -0.2453 -4.4856 41 1 4.8438 0.7771 -5.8396 42 1 3.7523 -1.6200 -8.4977 43 1 2.8735 -0.1969 -7.8891 44 1 3.8175 0.7435 -11.3217 45 1 3.9099 -3.3660 -2.1263 46 1 3.0871 -2.2019 -0.1200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462077496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:32 Heat of formation + Delta-G solvation = -8.752569 kcal Electronic energy + Delta-G solvation = -21489.029262 eV Core-core repulsion = 18570.009048 eV Total energy + Delta-G solvation = -2919.020214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85399 -38.62700 -36.47924 -35.05761 -33.97803 -31.84757 -29.92728 -29.20492 -28.12701 -27.88696 -26.24218 -24.80015 -23.35406 -22.45902 -20.86252 -20.30145 -18.71871 -18.11362 -16.87483 -16.48521 -16.12192 -15.80412 -15.66840 -15.30035 -14.93448 -14.49160 -14.33496 -14.24356 -14.09641 -14.04866 -13.54611 -13.26505 -13.24376 -13.06373 -12.92688 -12.79643 -12.71016 -12.50243 -12.32500 -12.14809 -11.98524 -11.92465 -11.54129 -11.46339 -11.28061 -11.19029 -11.04884 -10.54621 -10.35251 -9.67758 -8.20312 -7.96841 -6.27719 0.66319 0.80802 1.38558 1.39204 1.50178 2.30673 2.42050 3.06784 3.14583 3.90731 3.96489 4.04043 4.19968 4.23065 4.27710 4.39606 4.45306 4.45628 4.60681 4.66743 4.69103 4.72116 4.74282 4.88141 4.89248 4.90577 4.97077 5.03646 5.07697 5.08331 5.18836 5.23485 5.25815 5.34163 5.41839 5.43224 5.47713 5.51224 5.58464 5.69334 5.76648 5.86160 5.96974 6.13036 6.26848 6.47057 6.72960 6.87284 7.40410 8.92857 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.003864 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.485935 B = 7245.520597 C = 7971.399671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.076 4.076 6 C -0.208 4.208 7 C 0.204 3.796 8 N -0.633 5.633 9 C 0.092 3.908 10 C 0.137 3.863 11 C -0.089 4.089 12 H 0.049 0.951 13 C -0.115 4.115 14 C 0.036 3.964 15 C -0.529 4.529 16 H 0.055 0.945 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.957 3.043 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.207 4.207 24 C -0.076 4.076 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.034 0.966 42 H -0.008 1.008 43 H -0.007 1.007 44 H 0.262 0.738 45 H 0.133 0.867 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 -4.799 21.477 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.148 4.148 5 C -0.094 4.094 6 C -0.230 4.230 7 C 0.102 3.898 8 N -0.343 5.343 9 C -0.051 4.051 10 C 0.013 3.987 11 C -0.109 4.109 12 H 0.068 0.932 13 C -0.172 4.172 14 C -0.002 4.002 15 C -0.568 4.568 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.783 3.217 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.191 1.191 23 C -0.230 4.230 24 C -0.094 4.094 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.071 0.929 45 H 0.151 0.849 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.753 -4.887 21.149 22.028 hybrid contribution 0.597 0.620 -1.237 1.507 sum -3.157 -4.267 19.912 20.607 Atomic orbital electron populations 1.21841 0.94366 1.01689 1.01970 1.19998 0.95876 0.95676 0.94788 1.21853 1.00768 0.95458 1.01955 1.19798 1.02237 0.98092 0.94626 1.20808 0.98205 0.98757 0.91677 1.20933 1.04311 0.98426 0.99344 1.18027 0.92920 0.91669 0.87147 1.46607 1.54972 1.29869 1.02853 1.21717 0.94168 0.86307 1.02885 1.21404 0.97477 0.96830 0.82980 1.21437 0.98147 0.95793 0.95558 0.93227 1.21698 1.00429 0.97204 0.97898 1.18959 0.95351 0.94603 0.91266 1.21593 1.07298 1.29343 0.98520 0.92639 1.25887 0.98259 0.98192 0.97302 1.70083 1.32114 1.46511 1.08616 0.85560 0.79250 0.78722 0.78218 1.19840 1.20770 1.19090 1.20836 1.07331 1.04237 0.90580 1.21012 0.95832 0.94311 0.98287 0.91375 0.93215 0.93002 0.89864 0.93300 0.91301 0.93313 0.86080 0.87009 0.92437 0.91784 0.90359 0.91031 0.91547 0.93796 0.92913 0.94645 0.98938 0.98886 0.92882 0.84879 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.00 71.98 0.65 -1.62 16 2 C -0.05 -0.79 3.09 -11.54 -0.04 -0.83 16 3 C -0.14 -2.45 9.01 71.98 0.65 -1.80 16 4 C -0.15 -3.32 4.79 -19.84 -0.09 -3.42 16 5 C -0.08 -2.00 8.70 22.25 0.19 -1.80 16 6 C -0.21 -6.29 7.15 22.40 0.16 -6.13 16 7 C 0.20 5.98 5.38 38.21 0.21 6.18 16 8 N -0.63 -18.78 2.87 -722.18 -2.07 -20.85 16 9 C 0.09 2.13 10.19 127.77 1.30 3.43 16 10 C 0.14 4.72 4.95 86.38 0.43 5.15 16 11 C -0.09 -3.70 2.54 -10.79 -0.03 -3.72 16 12 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 13 C -0.12 -4.58 7.45 71.98 0.54 -4.04 16 14 C 0.04 1.87 4.45 29.85 0.13 2.00 16 15 C -0.53 -30.08 8.41 25.60 0.22 -29.87 16 16 H 0.06 3.08 7.06 -2.91 -0.02 3.06 16 17 C 0.00 0.06 5.46 84.65 0.46 0.53 16 18 N -0.93 -56.77 13.29 21.44 0.28 -56.49 16 19 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C -0.21 -5.14 9.21 22.40 0.21 -4.93 16 24 C -0.08 -1.69 9.66 22.25 0.21 -1.47 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.86 7.37 -2.39 -0.02 0.84 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.25 7.87 -2.39 -0.02 1.23 16 29 H 0.05 0.91 7.40 -2.39 -0.02 0.89 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.12 2.91 7.09 -2.91 -0.02 2.89 16 33 H 0.11 3.70 4.40 -2.91 -0.01 3.69 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.52 8.07 -2.38 -0.02 1.50 16 36 H 0.08 1.56 6.20 -2.39 -0.01 1.55 16 37 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 38 H 0.07 2.33 6.20 -2.38 -0.01 2.32 16 39 H 0.04 1.72 6.66 -2.39 -0.02 1.71 16 40 H 0.05 1.93 5.86 -2.39 -0.01 1.92 16 41 H 0.03 1.52 6.95 -2.39 -0.02 1.50 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.13 2.77 6.14 -2.91 -0.02 2.75 16 46 H 0.14 2.31 7.94 -2.91 -0.02 2.29 16 Total: -1.00 -63.78 353.15 6.36 -57.41 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.93 Total: 15.53 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 5.19 Total: -42.35 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.79 Total: -77.34 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.78 6.36 -57.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462077496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.661 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds