Wall clock time and date at job start Mon Mar 30 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46632 * 270.00163 * 3 2 1 5 5 H 1.48496 * 109.46690 * 29.99716 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21695 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.46676 * 119.99656 * 179.97438 * 11 10 9 14 14 C 1.37871 * 126.23159 * 179.97438 * 13 11 10 15 15 C 1.39836 * 107.08577 * 179.97438 * 14 13 11 16 16 S 1.76208 * 126.06658 * 180.02562 * 15 14 13 17 17 O 1.42099 * 106.39872 * 203.53598 * 16 15 14 18 18 O 1.42104 * 106.40027 * 336.45531 * 16 15 14 19 19 F 1.60993 * 107.21668 * 89.99701 * 16 15 14 20 20 C 1.35447 * 107.86554 * 359.97438 * 15 14 13 21 21 N 1.35535 * 108.87020 * 359.77204 * 20 15 14 22 22 H 0.96997 * 125.67646 * 180.26015 * 21 20 15 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 25 25 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 26 26 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 27 27 H 1.08007 * 126.45889 * 0.02562 * 14 13 11 28 28 H 1.08005 * 125.56628 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5573 -5.1057 0.0020 13 6 2.7069 -5.9982 0.0005 14 6 2.3912 -7.3403 0.0014 15 6 3.5983 -8.0463 -0.0002 16 16 3.7746 -9.7995 -0.0005 17 8 5.0589 -10.0736 0.5421 18 8 2.5720 -10.3238 0.5456 19 9 3.8202 -10.2736 -1.5384 20 6 4.6078 -7.1433 -0.0026 21 7 4.0795 -5.8951 -0.0077 22 1 4.5846 -5.0671 -0.0139 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 1.3986 -7.7661 0.0023 28 1 5.6618 -7.3793 -0.0047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528213886.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:48 Heat of formation + Delta-G solvation = -129.283722 kcal Electronic energy + Delta-G solvation = -18334.128932 eV Core-core repulsion = 14813.107452 eV Total energy + Delta-G solvation = -3521.021480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.28339 -41.62952 -38.56841 -37.74631 -36.42436 -34.51349 -32.64216 -31.68245 -29.90270 -27.36755 -23.71174 -22.69386 -21.70176 -20.34231 -20.21115 -19.16753 -17.85184 -16.90209 -16.76215 -16.48139 -15.54068 -15.31698 -15.24094 -14.64203 -14.44816 -14.31696 -13.97480 -13.71701 -13.14359 -13.01544 -12.94591 -12.61602 -12.51859 -12.15649 -12.00166 -11.73134 -11.12752 -11.01478 -10.48046 -9.99462 -9.63043 -9.54546 -8.92867 -8.74425 -8.12919 -6.30415 -4.39060 -0.24220 1.25930 1.69990 2.63920 2.92917 3.14307 3.20486 3.22741 3.28439 3.62369 3.70445 3.91666 4.22771 4.51357 4.82632 5.00077 5.05959 5.41185 5.56272 6.07331 6.35126 6.87363 7.08744 7.12985 7.32600 7.45943 7.79569 8.31086 8.54765 8.76609 9.27691 10.79531 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.049903 B = 0.003353 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.950225 B = 8349.496844 C = 8718.811189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.568 3.432 12 O -0.532 6.532 13 C -0.032 4.032 14 C -0.032 4.032 15 C -0.774 4.774 16 S 2.700 3.300 17 O -0.939 6.939 18 O -0.929 6.929 19 F -0.477 7.477 20 C 0.148 3.852 21 N -0.519 5.519 22 H 0.428 0.572 23 H 0.268 0.732 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.385 0.615 27 H 0.169 0.831 28 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 -15.157 -1.584 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.355 5.355 11 C 0.352 3.648 12 O -0.409 6.409 13 C -0.144 4.144 14 C -0.057 4.057 15 C -0.870 4.870 16 S 2.789 3.211 17 O -0.937 6.937 18 O -0.927 6.927 19 F -0.476 7.476 20 C 0.002 3.998 21 N -0.113 5.113 22 H 0.267 0.733 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.217 0.783 27 H 0.186 0.814 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 11.175 -15.633 -1.579 19.281 hybrid contribution 1.128 2.228 -0.061 2.498 sum 12.303 -13.406 -1.640 18.269 Atomic orbital electron populations 1.69964 1.06111 1.27573 1.48187 1.24954 0.94959 0.99539 0.94479 0.86380 0.79545 0.82491 0.78274 1.20390 1.20850 1.19801 1.21145 0.93133 0.90331 1.54136 0.91991 1.19226 0.88121 0.81479 0.98262 1.46441 1.10951 1.06061 1.72021 1.17017 0.87183 0.81982 0.78631 1.90850 1.14735 1.84213 1.51136 1.21249 0.81845 0.96510 1.14836 1.20936 0.97232 0.90164 0.97375 1.30453 1.00472 1.23262 1.32809 1.02833 0.74718 0.73846 0.69676 1.93719 1.41045 1.84175 1.74779 1.93742 1.46977 1.77610 1.74379 1.93676 1.96937 1.92248 1.64763 1.21860 0.98743 0.82576 0.96624 1.42492 1.07052 1.08834 1.52877 0.73286 0.92230 0.95019 0.94990 0.78339 0.81401 0.78869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 13.29 55.43 0.74 -24.29 15 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.91 19.96 29.54 -169.99 -5.02 14.94 15 4 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 7 C -0.55 -14.09 9.28 -34.44 -0.32 -14.41 15 8 H 0.06 1.46 7.60 -52.49 -0.40 1.06 15 9 C 0.25 6.24 5.43 -5.19 -0.03 6.21 15 10 N -0.71 -13.68 5.54 -62.79 -0.35 -14.02 15 11 C 0.57 10.83 7.79 -12.86 -0.10 10.73 15 12 O -0.53 -12.35 16.88 5.19 0.09 -12.26 15 13 C -0.03 -0.46 7.06 -81.98 -0.58 -1.04 15 14 C -0.03 -0.43 10.44 -39.12 -0.41 -0.84 15 15 C -0.77 -7.90 6.23 -39.98 -0.25 -8.15 15 16 S 2.70 24.68 7.00 -107.50 -0.75 23.93 15 17 O -0.94 -9.92 17.87 -57.17 -1.02 -10.94 15 18 O -0.93 -11.51 17.89 -57.17 -1.02 -12.54 15 19 F -0.48 -4.17 17.91 2.25 0.04 -4.13 15 20 C 0.15 1.21 11.64 -16.91 -0.20 1.01 15 21 N -0.52 -5.03 5.99 -9.39 -0.06 -5.09 15 22 H 0.43 2.89 8.19 -40.82 -0.33 2.55 15 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 24 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.38 5.99 7.45 -40.82 -0.30 5.69 15 27 H 0.17 2.21 8.06 -52.48 -0.42 1.79 15 28 H 0.19 0.75 8.06 -52.48 -0.42 0.33 15 LS Contribution 280.50 15.07 4.23 4.23 Total: -1.00 -35.83 280.50 -6.97 -42.80 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -1.86 Total: 2.21 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.98 Total: -4.85 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.33 Total: -43.40 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.96 Total: -35.73 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.04 Total: -4.13 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 24.68 SS G_CDS: -0.75 Total: 23.93 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.83 -6.97 -42.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528213886.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.485 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds