Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46632 * 270.00163 * 3 2 1 5 5 H 1.48496 * 109.46690 * 29.99716 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21695 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.46676 * 119.99656 * 179.97438 * 11 10 9 14 14 C 1.37871 * 126.23159 * 179.97438 * 13 11 10 15 15 C 1.39836 * 107.08577 * 179.97438 * 14 13 11 16 16 S 1.76208 * 126.06658 * 180.02562 * 15 14 13 17 17 O 1.42099 * 106.39872 * 203.53598 * 16 15 14 18 18 O 1.42104 * 106.40027 * 336.45531 * 16 15 14 19 19 F 1.60993 * 107.21668 * 89.99701 * 16 15 14 20 20 C 1.35447 * 107.86554 * 359.97438 * 15 14 13 21 21 N 1.35535 * 108.87020 * 359.77204 * 20 15 14 22 22 H 0.96997 * 125.67646 * 180.26015 * 21 20 15 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 25 25 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 26 26 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 27 27 H 1.08007 * 126.45889 * 0.02562 * 14 13 11 28 28 H 1.08005 * 125.56628 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5573 -5.1057 0.0020 13 6 2.7069 -5.9982 0.0005 14 6 2.3912 -7.3403 0.0014 15 6 3.5983 -8.0463 -0.0002 16 16 3.7746 -9.7995 -0.0005 17 8 5.0589 -10.0736 0.5421 18 8 2.5720 -10.3238 0.5456 19 9 3.8202 -10.2736 -1.5384 20 6 4.6078 -7.1433 -0.0026 21 7 4.0795 -5.8951 -0.0077 22 1 4.5846 -5.0671 -0.0139 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 1.3986 -7.7661 0.0023 28 1 5.6618 -7.3793 -0.0047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528213886.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -160.243482 kcal Electronic energy + Delta-G solvation = -18335.471448 eV Core-core repulsion = 14813.107452 eV Total energy + Delta-G solvation = -3522.363996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.03496 -42.58844 -40.13375 -38.59850 -37.28127 -36.33060 -34.51009 -32.65513 -31.08619 -29.15372 -25.40873 -23.62130 -23.12456 -21.47763 -21.00114 -20.55481 -18.63622 -18.41668 -17.65212 -17.52458 -17.05497 -16.87410 -16.55260 -16.04773 -15.41639 -15.26350 -15.16453 -14.80349 -14.63808 -14.10177 -13.96642 -13.84020 -13.83114 -13.49119 -13.39080 -12.98760 -12.75159 -12.62901 -12.27907 -11.55268 -11.25503 -10.86462 -10.84979 -10.12556 -9.63762 -8.33028 -6.50472 -1.02552 0.27162 0.76089 1.42012 1.44128 1.55088 1.81778 2.09472 2.17929 2.25418 2.44032 2.55263 3.02534 3.07970 3.77607 3.95018 4.01664 4.36565 4.63393 5.00107 5.15050 5.16660 5.30573 5.36284 5.58332 5.77401 6.18497 6.56858 6.70681 7.12851 7.27498 8.78969 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.049903 B = 0.003353 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.950225 B = 8349.496844 C = 8718.811189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.700 5.700 11 C 0.568 3.432 12 O -0.586 6.586 13 C -0.065 4.065 14 C -0.034 4.034 15 C -0.788 4.788 16 S 2.742 3.258 17 O -0.944 6.944 18 O -0.962 6.962 19 F -0.470 7.470 20 C 0.189 3.811 21 N -0.507 5.507 22 H 0.443 0.557 23 H 0.269 0.731 24 H -0.007 1.007 25 H -0.008 1.008 26 H 0.406 0.594 27 H 0.158 0.842 28 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.027 -15.377 -1.735 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.356 3.644 12 O -0.467 6.467 13 C -0.176 4.176 14 C -0.059 4.059 15 C -0.882 4.882 16 S 2.830 3.170 17 O -0.943 6.943 18 O -0.961 6.961 19 F -0.470 7.470 20 C 0.042 3.958 21 N -0.103 5.103 22 H 0.286 0.714 23 H 0.078 0.922 24 H 0.011 0.989 25 H 0.010 0.990 26 H 0.241 0.759 27 H 0.176 0.824 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 15.087 -15.856 -1.730 21.955 hybrid contribution -0.027 2.141 -0.038 2.141 sum 15.060 -13.715 -1.768 20.446 Atomic orbital electron populations 1.70133 1.08295 1.28685 1.49594 1.26074 0.95783 1.03966 0.93801 0.85136 0.78486 0.76891 0.78566 1.19636 1.21166 1.17762 1.21566 0.94353 0.90273 1.53320 0.89502 1.18652 0.88582 0.83826 0.94660 1.46045 1.11192 1.05178 1.72457 1.17570 0.87403 0.82633 0.76781 1.90809 1.17480 1.85081 1.53355 1.20348 0.83387 0.94687 1.19203 1.21056 0.98293 0.90335 0.96261 1.30520 0.99705 1.23990 1.34006 1.01591 0.73512 0.72825 0.69038 1.93703 1.41213 1.84165 1.75169 1.93702 1.48666 1.78289 1.75445 1.93665 1.96878 1.92147 1.64286 1.22810 1.00556 0.80988 0.91438 1.42397 1.05084 1.10364 1.52419 0.71430 0.92180 0.98898 0.98962 0.75863 0.82448 0.73385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.17 15 2 C 0.00 0.20 5.46 84.65 0.46 0.67 15 3 Si 0.99 40.45 29.54 68.60 2.03 42.48 15 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 5 H -0.29 -11.78 7.11 99.48 0.71 -11.08 15 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 7 C -0.56 -28.71 9.28 25.60 0.24 -28.48 15 8 H 0.09 3.93 7.60 -2.91 -0.02 3.91 15 9 C 0.27 13.93 5.43 85.63 0.46 14.39 15 10 N -0.70 -27.64 5.54 -470.80 -2.61 -30.25 15 11 C 0.57 22.46 7.79 86.45 0.67 23.13 15 12 O -0.59 -29.05 16.88 -4.33 -0.07 -29.12 15 13 C -0.06 -1.81 7.06 40.35 0.28 -1.52 15 14 C -0.03 -0.88 10.44 22.57 0.24 -0.64 15 15 C -0.79 -13.91 6.23 22.01 0.14 -13.77 15 16 S 2.74 43.59 7.00 -56.49 -0.40 43.19 15 17 O -0.94 -16.66 17.87 -128.00 -2.29 -18.95 15 18 O -0.96 -22.90 17.89 -128.00 -2.29 -25.19 15 19 F -0.47 -7.05 17.91 44.97 0.81 -6.25 15 20 C 0.19 2.22 11.64 83.48 0.97 3.19 15 21 N -0.51 -8.21 5.99 -183.62 -1.10 -9.31 15 22 H 0.44 4.32 8.19 -92.71 -0.76 3.56 15 23 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 25 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 15 26 H 0.41 12.24 7.45 -92.71 -0.69 11.55 15 27 H 0.16 4.32 8.06 -2.91 -0.02 4.30 15 28 H 0.25 0.14 8.06 -2.91 -0.02 0.12 15 Total: -1.00 -81.66 280.50 -2.38 -84.04 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -0.21 Total: 6.56 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 3.47 Total: -3.03 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -3.43 Total: -93.73 kcal Atomic # 8 Polarization: -68.61 SS G_CDS: -4.65 Total: -73.27 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.81 Total: -6.25 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 43.59 SS G_CDS: -0.40 Total: 43.19 kcal Total: -81.66 -2.38 -84.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528213886.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.200 kcal (2) G-P(sol) polarization free energy of solvation -81.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds