Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00443 * 2 1 4 4 H 1.48503 * 109.46688 * 270.00198 * 3 2 1 5 5 H 1.48494 * 109.46946 * 30.00077 * 3 2 1 6 6 H 1.48493 * 109.46931 * 150.00518 * 3 2 1 7 7 C 1.37887 * 119.99374 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99745 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99582 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47007 * 299.99127 * 9 7 2 11 11 O 1.42898 * 109.47513 * 59.99459 * 9 7 2 12 12 C 1.53000 * 109.46790 * 179.97438 * 9 7 2 13 13 S 1.81006 * 109.47080 * 179.97438 * 12 9 7 14 14 C 1.76194 * 99.99971 * 179.97438 * 13 12 9 15 15 N 1.30874 * 125.57902 * 0.02562 * 14 13 12 16 16 N 1.26256 * 117.51852 * 179.73635 * 15 14 13 17 17 C 1.30785 * 116.34459 * 359.97438 * 16 15 14 18 18 C 1.46646 * 126.10734 * 179.97438 * 17 16 15 19 19 O 1.21603 * 120.00195 * 180.02562 * 18 17 16 20 20 O 1.34882 * 119.99795 * 0.02957 * 18 17 16 21 21 S 1.71266 * 125.57451 * 179.71812 * 14 13 12 22 22 H 0.97001 * 119.99164 * 359.97438 * 1 2 3 23 23 H 0.96697 * 113.99988 * 59.99954 * 11 9 7 24 24 H 1.08992 * 109.47660 * 59.99548 * 12 9 7 25 25 H 1.09005 * 109.46730 * 299.99416 * 12 9 7 26 26 H 0.96699 * 117.00397 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1943 0.0000 10 1 3.8751 -0.6800 -0.8896 11 8 3.9874 -0.5213 1.1674 12 6 4.0213 -2.6368 -0.0001 13 16 5.8314 -2.6370 -0.0001 14 6 6.1372 -4.3722 0.0005 15 7 5.2211 -5.3068 0.0004 16 7 5.6124 -6.5072 -0.0042 17 6 6.9066 -6.6957 -0.0090 18 6 7.5909 -7.9927 -0.0144 19 8 8.8060 -8.0391 -0.0181 20 8 6.8725 -9.1343 -0.0152 21 16 7.6820 -5.1116 -0.0061 22 1 -0.4849 0.8401 0.0004 23 1 3.7018 -0.9253 1.9982 24 1 3.6583 -3.1505 -0.8902 25 1 3.6576 -3.1507 0.8898 26 1 7.3678 -9.9648 -0.0192 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241265.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = -70.026263 kcal Electronic energy + Delta-G solvation = -15957.832347 eV Core-core repulsion = 12869.760545 eV Total energy + Delta-G solvation = -3088.071802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.007 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31917 -40.24218 -36.55137 -36.52226 -32.43409 -32.17549 -30.22895 -28.08632 -25.80361 -24.05385 -21.69472 -21.12161 -19.43820 -18.76950 -17.77705 -17.68465 -16.57059 -16.00811 -15.40838 -15.04766 -14.72897 -14.60892 -14.26680 -13.64877 -13.49191 -12.92862 -12.19354 -12.01453 -11.82537 -11.59931 -11.40256 -11.06312 -10.88823 -10.73916 -10.65917 -10.32708 -10.13786 -10.06134 -9.26562 -8.81951 -8.58494 -7.81461 -6.27598 -4.42493 -0.45818 0.19675 0.85139 1.24222 1.58816 2.25581 2.53378 2.59867 3.28818 3.39308 3.62127 4.14498 4.39030 4.48060 5.02501 5.03122 5.48646 5.53719 5.65506 5.90402 6.31304 6.93562 7.28928 7.33504 8.10355 8.10872 8.60641 8.79202 9.32882 10.82047 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.048756 B = 0.003874 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.146927 B = 7226.695298 C = 7707.941384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.088 3.912 3 Si 0.869 3.131 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.217 1.217 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.208 3.792 10 H 0.068 0.932 11 O -0.577 6.577 12 C -0.119 4.119 13 S 0.057 5.943 14 C -0.032 4.032 15 N -0.273 5.273 16 N -0.155 5.155 17 C -0.093 4.093 18 C 0.585 3.415 19 O -0.502 6.502 20 O -0.486 6.486 21 S 0.273 5.727 22 H 0.268 0.732 23 H 0.362 0.638 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.084 -11.291 0.457 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.118 4.118 3 Si 0.695 3.305 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.139 1.139 7 C -0.603 4.603 8 H 0.096 0.904 9 C 0.149 3.851 10 H 0.085 0.915 11 O -0.384 6.384 12 C -0.269 4.269 13 S 0.292 5.708 14 C -0.412 4.412 15 N -0.123 5.123 16 N -0.004 5.004 17 C -0.373 4.373 18 C 0.424 3.576 19 O -0.389 6.389 20 O -0.297 6.297 21 S 0.513 5.487 22 H 0.078 0.922 23 H 0.209 0.791 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 16.852 -9.560 0.017 19.375 hybrid contribution -0.811 -1.270 0.260 1.529 sum 16.041 -10.830 0.277 19.356 Atomic orbital electron populations 1.69932 1.06735 1.27800 1.47462 1.24970 0.94674 0.99913 0.92266 0.87040 0.83049 0.81792 0.78622 1.21129 1.21901 1.13904 1.21273 0.88298 0.95349 1.55389 0.90362 1.19653 0.94740 0.84156 0.86598 0.91464 1.86711 1.77614 1.57507 1.16524 1.24922 0.87997 1.06287 1.07695 1.86209 1.13324 0.86150 1.85133 1.31728 0.97285 1.09339 1.02854 1.72312 1.27548 0.92912 1.19507 1.71903 1.10075 1.12538 1.05845 1.27882 0.93868 0.97510 1.18043 1.18576 0.83950 0.82827 0.72257 1.91006 1.13763 1.87733 1.46391 1.84680 1.43674 1.16419 1.84928 1.84638 1.04668 0.94700 1.64695 0.92221 0.79090 0.87816 0.88263 0.72013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.75 13.96 55.43 0.77 -24.98 15 2 C 0.09 2.39 5.47 -17.82 -0.10 2.30 15 3 Si 0.87 20.44 26.99 -169.99 -4.59 15.85 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.22 -4.91 5.31 56.52 0.30 -4.61 15 7 C -0.56 -14.58 9.34 -34.44 -0.32 -14.90 15 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 15 9 C 0.21 4.39 2.36 -27.88 -0.07 4.32 15 10 H 0.07 1.44 7.57 -51.93 -0.39 1.05 15 11 O -0.58 -11.66 9.74 -35.23 -0.34 -12.00 15 12 C -0.12 -2.12 4.82 37.16 0.18 -1.94 15 13 S 0.06 0.84 21.94 -107.50 -2.36 -1.52 15 14 C -0.03 -0.46 7.58 52.35 0.40 -0.07 15 15 N -0.27 -4.50 10.95 30.36 0.33 -4.16 15 16 N -0.16 -2.44 11.71 32.78 0.38 -2.06 15 17 C -0.09 -1.23 7.57 -14.61 -0.11 -1.34 15 18 C 0.59 6.70 8.31 34.12 0.28 6.99 15 19 O -0.50 -6.32 17.75 -19.34 -0.34 -6.66 15 20 O -0.49 -4.30 13.43 -40.99 -0.55 -4.85 15 21 S 0.27 3.20 23.12 -107.50 -2.49 0.71 15 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 23 H 0.36 6.41 9.04 45.56 0.41 6.83 15 24 H 0.10 1.89 8.14 -51.92 -0.42 1.46 15 25 H 0.10 1.78 8.14 -51.91 -0.42 1.35 15 26 H 0.42 1.27 9.11 45.56 0.42 1.68 15 LS Contribution 272.86 15.07 4.11 4.11 Total: -1.00 -31.66 272.86 -4.87 -36.53 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -0.07 Total: 3.66 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 0.26 Total: -4.64 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 1.49 Total: -31.20 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.24 Total: -23.51 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.59 Total: 15.85 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -4.84 Total: -0.81 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.66 -4.87 -36.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241265.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.493 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds