Wall clock time and date at job start Mon Mar 30 2020 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86807 * 119.99763 * 2 1 4 4 H 1.48504 * 109.46902 * 239.99892 * 3 2 1 5 5 H 1.48497 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47197 * 120.00073 * 3 2 1 7 7 C 1.39099 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00505 * 180.02562 * 7 2 1 9 9 N 1.36785 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00094 * 179.97438 * 9 7 2 11 11 O 1.21567 * 119.99978 * 0.02562 * 10 9 7 12 12 C 1.47984 * 120.00001 * 179.97438 * 10 9 7 13 13 C 1.39271 * 119.70235 * 179.97438 * 12 10 9 14 14 C 1.38690 * 119.18340 * 180.02562 * 13 12 10 15 15 C 1.38407 * 118.56850 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.33879 * 180.02562 * 15 14 13 17 17 F 1.39905 * 109.47157 * 0.02562 * 16 15 14 18 18 F 1.39900 * 109.47159 * 240.00375 * 16 15 14 19 19 F 1.39897 * 109.47274 * 120.00066 * 16 15 14 20 20 C 1.39238 * 119.32355 * 0.27350 * 15 14 13 21 21 O 1.35666 * 119.61431 * 179.69945 * 20 15 14 22 22 N 1.31932 * 120.77170 * 359.41089 * 20 15 14 23 23 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99746 * 359.97438 * 9 7 2 25 25 H 1.08005 * 120.40970 * 0.02809 * 13 12 10 26 26 H 1.08009 * 120.71684 * 179.97438 * 14 13 12 27 27 H 0.96697 * 113.99743 * 89.99510 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7465 -0.0006 6 1 3.1009 1.6965 1.2124 7 6 2.0088 -1.2046 0.0005 8 1 3.0888 -1.2046 0.0010 9 7 1.3249 -2.3892 0.0016 10 6 1.9989 -3.5564 0.0016 11 8 3.2145 -3.5564 0.0011 12 6 1.2590 -4.8380 0.0033 13 6 1.9616 -6.0405 0.0028 14 6 1.2574 -7.2352 0.0039 15 6 -0.1259 -7.1882 0.0049 16 6 -0.9309 -8.4622 0.0067 17 9 -0.0649 -9.5610 0.0076 18 9 -1.7384 -8.5052 -1.1350 19 9 -1.7366 -8.5031 1.1496 20 6 -0.7661 -5.9517 -0.0009 21 8 -2.1218 -5.8987 -0.0061 22 7 -0.0699 -4.8311 0.0042 23 1 -0.4850 0.8400 -0.0004 24 1 0.3549 -2.3892 0.0023 25 1 3.0417 -6.0425 0.0016 26 1 1.7771 -8.1820 0.0030 27 1 -2.5180 -5.8810 0.8757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611114060.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:52 Heat of formation + Delta-G solvation = -190.284261 kcal Electronic energy + Delta-G solvation = -20865.643555 eV Core-core repulsion = 16788.136506 eV Total energy + Delta-G solvation = -4077.507048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.15315 -47.70798 -47.57945 -40.47956 -38.22144 -36.78115 -34.33254 -33.12598 -31.50645 -30.63539 -26.99097 -25.09575 -23.53738 -22.78102 -20.30757 -18.83134 -18.52554 -18.48841 -18.30180 -17.98600 -16.93833 -16.06644 -15.20613 -14.97019 -14.55714 -14.43624 -14.10102 -14.06753 -14.00481 -13.84738 -13.82651 -13.77695 -13.40893 -12.76197 -12.56493 -11.97606 -11.84768 -11.64800 -11.29537 -10.68736 -10.54302 -10.06599 -9.81370 -9.69627 -8.94435 -8.66096 -8.32960 -6.85059 -4.07568 0.48929 1.20400 2.63855 2.92512 3.07816 3.11434 3.18591 3.54192 3.68344 3.87473 4.01594 4.18311 4.42954 4.49629 4.69549 5.04953 5.12610 5.25506 5.44126 5.72801 5.92307 6.23051 6.52385 7.13503 7.38634 7.65953 7.87529 8.26324 8.77568 9.17513 9.77460 10.28444 Molecular weight = 276.05amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.004318 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.008925 B = 6483.357541 C = 7053.367137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.026 3.974 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.283 4.283 8 H 0.116 0.884 9 N -0.502 5.502 10 C 0.444 3.556 11 O -0.598 6.598 12 C 0.172 3.828 13 C -0.150 4.150 14 C -0.018 4.018 15 C -0.282 4.282 16 C 0.525 3.475 17 F -0.180 7.180 18 F -0.171 7.171 19 F -0.180 7.180 20 C 0.369 3.631 21 O -0.476 6.476 22 N -0.490 5.490 23 H 0.284 0.716 24 H 0.407 0.593 25 H 0.158 0.842 26 H 0.151 0.849 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -12.518 1.683 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.414 4.414 8 H 0.133 0.867 9 N -0.133 5.133 10 C 0.233 3.767 11 O -0.486 6.486 12 C 0.034 3.966 13 C -0.171 4.171 14 C -0.043 4.043 15 C -0.289 4.289 16 C 0.470 3.530 17 F -0.162 7.162 18 F -0.153 7.153 19 F -0.161 7.161 20 C 0.186 3.814 21 O -0.284 6.284 22 N -0.211 5.211 23 H 0.094 0.906 24 H 0.243 0.757 25 H 0.176 0.824 26 H 0.169 0.831 27 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.160 -11.525 1.086 12.000 hybrid contribution -0.237 -0.251 0.450 0.568 sum -3.398 -11.776 1.536 12.353 Atomic orbital electron populations 1.69614 1.06471 1.29856 1.43463 1.25646 0.95789 1.00828 0.95932 0.85708 0.78899 0.78880 0.79717 1.19170 1.20407 1.19176 1.20094 0.94261 0.82059 1.45015 0.86653 1.42058 1.10744 1.04621 1.55858 1.17118 0.86960 0.82265 0.90381 1.90635 1.12134 1.85733 1.60065 1.21779 0.87308 0.96084 0.91390 1.22027 1.02791 0.90639 1.01683 1.21271 0.91192 0.99879 0.91985 1.21013 0.95898 0.92647 1.19336 1.17883 0.77718 0.83521 0.73886 1.93148 1.69775 1.56939 1.96291 1.93232 1.74511 1.96700 1.50828 1.93179 1.74939 1.96773 1.51246 1.18656 0.84612 0.86399 0.91730 1.84787 1.13658 1.95698 1.34226 1.67460 1.08640 1.29948 1.15103 0.90572 0.75669 0.82425 0.83097 0.73624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.90 13.05 55.50 0.72 -21.17 15 2 C 0.03 0.64 5.50 -17.45 -0.10 0.55 15 3 Si 0.94 19.19 29.55 -169.99 -5.02 14.17 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.28 -7.48 9.68 -15.02 -0.15 -7.62 15 8 H 0.12 3.10 7.15 -52.48 -0.38 2.72 15 9 N -0.50 -12.81 5.26 -11.80 -0.06 -12.87 15 10 C 0.44 10.81 7.76 -12.27 -0.10 10.71 15 11 O -0.60 -15.85 15.89 5.31 0.08 -15.77 15 12 C 0.17 3.48 6.75 -83.03 -0.56 2.92 15 13 C -0.15 -2.47 9.63 -39.03 -0.38 -2.84 15 14 C -0.02 -0.25 9.52 -39.35 -0.37 -0.62 15 15 C -0.28 -4.09 5.40 -104.19 -0.56 -4.66 15 16 C 0.52 6.83 2.99 36.01 0.11 6.94 15 17 F -0.18 -2.18 16.04 2.25 0.04 -2.14 15 18 F -0.17 -2.41 16.95 2.25 0.04 -2.37 15 19 F -0.18 -2.22 16.98 2.25 0.04 -2.19 15 20 C 0.37 6.08 7.64 -17.14 -0.13 5.95 15 21 O -0.48 -6.84 12.49 -18.70 -0.23 -7.08 15 22 N -0.49 -9.53 9.57 -9.89 -0.09 -9.63 15 23 H 0.28 6.72 8.31 -40.82 -0.34 6.39 15 24 H 0.41 10.32 7.22 -40.82 -0.29 10.03 15 25 H 0.16 2.46 7.63 -52.48 -0.40 2.06 15 26 H 0.15 1.56 7.24 -52.48 -0.38 1.18 15 27 H 0.40 3.88 9.06 45.56 0.41 4.29 15 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -29.24 268.57 -2.85 -32.09 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -0.17 Total: 11.59 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -2.23 Total: 11.32 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.57 Total: -43.67 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.15 Total: -22.84 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.11 Total: -6.69 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.24 -2.85 -32.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611114060.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.196 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds