Wall clock time and date at job start Mon Mar 30 2020 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86807 * 119.99763 * 2 1 4 4 H 1.48504 * 109.46902 * 239.99892 * 3 2 1 5 5 H 1.48497 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47197 * 120.00073 * 3 2 1 7 7 C 1.39099 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00505 * 180.02562 * 7 2 1 9 9 N 1.36785 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00094 * 179.97438 * 9 7 2 11 11 O 1.21567 * 119.99978 * 0.02562 * 10 9 7 12 12 C 1.47984 * 120.00001 * 179.97438 * 10 9 7 13 13 C 1.39271 * 119.70235 * 179.97438 * 12 10 9 14 14 C 1.38690 * 119.18340 * 180.02562 * 13 12 10 15 15 C 1.38407 * 118.56850 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.33879 * 180.02562 * 15 14 13 17 17 F 1.39905 * 109.47157 * 0.02562 * 16 15 14 18 18 F 1.39900 * 109.47159 * 240.00375 * 16 15 14 19 19 F 1.39897 * 109.47274 * 120.00066 * 16 15 14 20 20 C 1.39238 * 119.32355 * 0.27350 * 15 14 13 21 21 O 1.35666 * 119.61431 * 179.69945 * 20 15 14 22 22 N 1.31932 * 120.77170 * 359.41089 * 20 15 14 23 23 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99746 * 359.97438 * 9 7 2 25 25 H 1.08005 * 120.40970 * 0.02809 * 13 12 10 26 26 H 1.08009 * 120.71684 * 179.97438 * 14 13 12 27 27 H 0.96697 * 113.99743 * 89.99510 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7465 -0.0006 6 1 3.1009 1.6965 1.2124 7 6 2.0088 -1.2046 0.0005 8 1 3.0888 -1.2046 0.0010 9 7 1.3249 -2.3892 0.0016 10 6 1.9989 -3.5564 0.0016 11 8 3.2145 -3.5564 0.0011 12 6 1.2590 -4.8380 0.0033 13 6 1.9616 -6.0405 0.0028 14 6 1.2574 -7.2352 0.0039 15 6 -0.1259 -7.1882 0.0049 16 6 -0.9309 -8.4622 0.0067 17 9 -0.0649 -9.5610 0.0076 18 9 -1.7384 -8.5052 -1.1350 19 9 -1.7366 -8.5031 1.1496 20 6 -0.7661 -5.9517 -0.0009 21 8 -2.1218 -5.8987 -0.0061 22 7 -0.0699 -4.8311 0.0042 23 1 -0.4850 0.8400 -0.0004 24 1 0.3549 -2.3892 0.0023 25 1 3.0417 -6.0425 0.0016 26 1 1.7771 -8.1820 0.0030 27 1 -2.5180 -5.8810 0.8757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611114060.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:52 Heat of formation + Delta-G solvation = -214.177228 kcal Electronic energy + Delta-G solvation = -20866.679631 eV Core-core repulsion = 16788.136506 eV Total energy + Delta-G solvation = -4078.543125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.20977 -48.73043 -48.65794 -41.91032 -39.98025 -38.12171 -36.22048 -34.53861 -33.33699 -32.01785 -28.48843 -26.73147 -24.87534 -24.12717 -21.92102 -20.39643 -19.86138 -19.61177 -19.54038 -19.31293 -18.52055 -17.41897 -16.87256 -16.53290 -15.82051 -15.72687 -15.60339 -15.49449 -15.26452 -15.09595 -14.95315 -14.82103 -14.73225 -14.29194 -14.06191 -13.62101 -13.12961 -12.97562 -12.91617 -12.57422 -12.13688 -11.65067 -11.37637 -11.26258 -10.47430 -10.34660 -10.20504 -8.65659 -6.08363 -0.86306 -0.08967 1.33408 1.41130 1.49462 1.53877 1.67599 2.17032 2.25653 2.49914 2.55679 2.86989 2.90701 3.16711 3.33060 3.40608 3.82776 3.88218 4.06642 4.31278 4.64308 4.78064 5.16630 5.25177 5.77606 6.23784 6.36974 6.55967 6.89517 7.30911 7.86421 8.49704 Molecular weight = 276.05amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.004318 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.008925 B = 6483.357541 C = 7053.367137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.007 4.007 3 Si 1.007 2.993 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.521 5.521 10 C 0.449 3.551 11 O -0.623 6.623 12 C 0.148 3.852 13 C -0.138 4.138 14 C 0.006 3.994 15 C -0.261 4.261 16 C 0.534 3.466 17 F -0.168 7.168 18 F -0.175 7.175 19 F -0.172 7.172 20 C 0.363 3.637 21 O -0.479 6.479 22 N -0.514 5.514 23 H 0.287 0.713 24 H 0.404 0.596 25 H 0.169 0.831 26 H 0.198 0.802 27 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 -15.156 1.838 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.211 4.211 3 Si 0.828 3.172 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.467 4.467 8 H 0.115 0.885 9 N -0.153 5.153 10 C 0.237 3.763 11 O -0.512 6.512 12 C 0.011 3.989 13 C -0.159 4.159 14 C -0.019 4.019 15 C -0.267 4.267 16 C 0.479 3.521 17 F -0.149 7.149 18 F -0.156 7.156 19 F -0.154 7.154 20 C 0.180 3.820 21 O -0.290 6.290 22 N -0.236 5.236 23 H 0.097 0.903 24 H 0.239 0.761 25 H 0.186 0.814 26 H 0.215 0.785 27 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -3.451 -14.196 1.258 14.664 hybrid contribution -0.256 0.048 0.416 0.491 sum -3.706 -14.148 1.675 14.721 Atomic orbital electron populations 1.69677 1.07538 1.30655 1.45501 1.26444 0.96569 1.03375 0.94702 0.84786 0.77768 0.75019 0.79600 1.18999 1.19148 1.18847 1.20026 0.93673 0.83393 1.49614 0.88511 1.42007 1.10356 1.04876 1.58036 1.17825 0.86971 0.83491 0.87968 1.90584 1.13585 1.86832 1.60220 1.21308 0.87926 0.95244 0.94446 1.22194 1.03400 0.90196 1.00142 1.21739 0.90694 1.00522 0.88901 1.21312 0.96585 0.92845 1.15925 1.17560 0.77615 0.82951 0.73977 1.93185 1.69365 1.56123 1.96234 1.93240 1.74566 1.96674 1.51127 1.93207 1.74672 1.96702 1.50797 1.18801 0.85295 0.86289 0.91606 1.84763 1.12558 1.95558 1.36147 1.67287 1.08642 1.32083 1.15592 0.90264 0.76088 0.81393 0.78450 0.71214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.71 13.05 21.69 0.28 -47.43 15 2 C -0.01 -0.38 5.50 84.98 0.47 0.09 15 3 Si 1.01 40.62 29.55 68.60 2.03 42.65 15 4 H -0.27 -10.49 7.11 99.48 0.71 -9.79 15 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 7 C -0.34 -18.87 9.68 84.13 0.81 -18.05 15 8 H 0.10 5.57 7.15 -2.91 -0.02 5.55 15 9 N -0.52 -28.03 5.26 -309.53 -1.63 -29.66 15 10 C 0.45 22.57 7.76 86.83 0.67 23.25 15 11 O -0.62 -34.03 15.89 -3.93 -0.06 -34.09 15 12 C 0.15 5.89 6.75 41.82 0.28 6.17 15 13 C -0.14 -4.19 9.63 22.63 0.22 -3.97 15 14 C 0.01 0.14 9.52 22.42 0.21 0.36 15 15 C -0.26 -6.51 5.40 -19.58 -0.11 -6.62 15 16 C 0.53 11.51 2.99 71.24 0.21 11.72 15 17 F -0.17 -3.16 16.04 44.97 0.72 -2.44 15 18 F -0.17 -4.23 16.95 44.97 0.76 -3.47 15 19 F -0.17 -3.54 16.98 44.97 0.76 -2.78 15 20 C 0.36 11.11 7.64 84.92 0.65 11.76 15 21 O -0.48 -12.67 12.49 -89.83 -1.12 -13.79 15 22 N -0.51 -19.70 9.57 -298.23 -2.85 -22.55 15 23 H 0.29 14.08 8.31 -92.71 -0.77 13.31 15 24 H 0.40 21.65 7.22 -92.71 -0.67 20.98 15 25 H 0.17 4.81 7.63 -2.91 -0.02 4.79 15 26 H 0.20 2.74 7.24 -2.91 -0.02 2.72 15 27 H 0.43 7.09 9.06 -74.06 -0.67 6.42 15 Total: -1.00 -66.19 268.57 2.26 -63.93 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.05 Total: 24.93 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 3.42 Total: 24.71 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -4.20 Total: -99.64 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -1.18 Total: -47.88 kcal Atomic # 9 Polarization: -10.94 SS G_CDS: 2.25 Total: -8.69 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -66.19 2.26 -63.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611114060.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.249 kcal (2) G-P(sol) polarization free energy of solvation -66.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds